RchiOBHm_Chr4g0438371

UPF0420 protein C16orf58 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0005337
Physical Location & Seq
Forward (+)
61118841 .. 61119450
610 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40650

Sequence Viewer

Length: 312 bp
ATGGAGGTATCGTCGGCAATATCGGAGATTATATTGGAAGAATGGAATGGTTCATCTTCAACCAAACTCTCCAGAACTGCCACTATAACTTCGTCTCCTTCACTCTGCATCCAAAGATCCGGGAACCGGTTCCACCATGTTTGGCGGCGAGTTCTTCAAGCTTTTGGCTTTCCCAGTAGTGTTACTCCAGATTATGTCCCTTTTCAAATGTGGGATTCACTTCAGGGTCTTTCTACTTACATAAGGATGATGCTTTCTACCCAAGTAAGCGTTTTGTTTACTTTTATAGTCTTGTTGAAGGTCCATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF647

Protein Analysis

103

Amino Acids

11.63

Weight (kDa)

9.1

Isoelectric Point (pI)

52.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UVB_sens_prot PF04884 46 - 88 3e-09 Vitamin B6 photo-protection and homoeostasis domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 145
AclWI GGATC 1 cut(s) 111
AcuI CTGAAG 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 126
AgeI ACCGGT 1 cut(s) 126
AgsI TTSAA 4 cut(s) 60, 158, 206, 298
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
Alw26I GTCTC 1 cut(s) 99
AlwI GGATC 1 cut(s) 111
AsiGI ACCGGT 1 cut(s) 126
Asp700I GAANNNNTTC 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 301
AsuC2I CCSGG 1 cut(s) 121
AvaII GGWCC 1 cut(s) 301
BcnI CCSGG 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 99
BisI GCNGC 1 cut(s) 146
BlsI GCNGC 1 cut(s) 147
Bme1390I CCNGG 1 cut(s) 121
Bme18I GGWCC 1 cut(s) 301
BmgT120I GGNCC 1 cut(s) 301
BmiI GGNNCC 2 cut(s) 125, 131
BmrFI CCNGG 1 cut(s) 121
BmrI ACTGGG 1 cut(s) 168
BmsI GCATC 2 cut(s) 117, 240
BmuI ACTGGG 1 cut(s) 168
BpmI CTGGAG 2 cut(s) 55, 171
BpuMI CCSGG 1 cut(s) 121
BsaJI CCNNGG 1 cut(s) 304
BsaWI WCCGGW 1 cut(s) 126
BsaXI ACNNNNNCTCC 3 cut(s) 26, 79, 109
Bsc4I CCNNNNNNNGG 1 cut(s) 126
Bse118I RCCGGY 1 cut(s) 126
Bse1I ACTGG 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 304
BseGI GGATG 2 cut(s) 108, 252
BseLI CCNNNNNNNGG 1 cut(s) 126
BseNI ACTGG 1 cut(s) 174
BshTI ACCGGT 1 cut(s) 126
BsiSI CCGG 2 cut(s) 120, 127
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 126
BsmAI GTCTC 1 cut(s) 99
BsmBI CGTCTC 1 cut(s) 99
BsmFI GGGAC 1 cut(s) 182
Bsp143I GATC 1 cut(s) 116
Bsp19I CCATGG 1 cut(s) 304
BspACI CCGC 1 cut(s) 145
BspLI GGNNCC 2 cut(s) 125, 131
BspPI GGATC 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 126
BsrI ACTGG 1 cut(s) 174
BssAI RCCGGY 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 1 cut(s) 116
BssT1I CCWWGG 1 cut(s) 304
BstDSI CCRYGG 1 cut(s) 304
BstF5I GGATG 2 cut(s) 108, 252
BstKTI GATC 1 cut(s) 119
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 119
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BtgI CCRYGG 1 cut(s) 304
BtsCI GGATG 2 cut(s) 108, 252
Cfr10I RCCGGY 1 cut(s) 126
Cfr13I GGNCC 1 cut(s) 301
CspAI ACCGGT 1 cut(s) 126
CspCI CAANNNNNGTGG 2 cut(s) 122, 157
CviAII CATG 2 cut(s) 137, 305
CviJI RGCY 2 cut(s) 161, 168
CviKI_1 RGCY 2 cut(s) 161, 168
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
Eco130I CCWWGG 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 301
Eco57I CTGAAG 1 cut(s) 206
EcoT14I CCWWGG 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 304
Esp3I CGTCTC 1 cut(s) 99
FaeI CATG 2 cut(s) 140, 308
FaiI YATR 7 cut(s) 32, 86, 138, 195, 242, 287, 306
FaqI GGGAC 1 cut(s) 182
FatI CATG 2 cut(s) 136, 304
Fnu4HI GCNGC 1 cut(s) 146
FokI GGATG 2 cut(s) 95, 259
Fsp4HI GCNGC 1 cut(s) 146
GluI GCNGC 1 cut(s) 146
GsuI CTGGAG 2 cut(s) 55, 171
HapII CCGG 2 cut(s) 120, 127
Hin1II CATG 2 cut(s) 140, 308
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 1 cut(s) 215
HpaII CCGG 2 cut(s) 120, 127
Hpy166II GTNNAC 1 cut(s) 279
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 2 cut(s) 72, 188
Hpy8I GTNNAC 1 cut(s) 279
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 2 cut(s) 108, 292
HpyCH4V TGCA 1 cut(s) 108
Hsp92II CATG 2 cut(s) 140, 308
Kzo9I GATC 1 cut(s) 116
LpnPI CCDG 6 cut(s) 85, 133, 140, 187, 201, 209
LweI GCATC 2 cut(s) 117, 240
MaeIII GTNAC 1 cut(s) 181
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MboII GAAGA 3 cut(s) 48, 50, 146
MflI RGATCY 1 cut(s) 116
MroXI GAANNNNTTC 1 cut(s) 128
MslI CAYNNNNRTG 1 cut(s) 245
MspI CCGG 2 cut(s) 120, 127
MspR9I CCNGG 1 cut(s) 121
NciI CCSGG 1 cut(s) 121
NcoI CCATGG 1 cut(s) 304
NdeII GATC 1 cut(s) 116
NlaIII CATG 2 cut(s) 140, 308
NlaIV GGNNCC 2 cut(s) 125, 131
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 215
PfoI TCCNGGA 1 cut(s) 119
PinAI ACCGGT 1 cut(s) 126
PkrI GCNGC 1 cut(s) 147
PspN4I GGNNCC 2 cut(s) 125, 131
PspPI GGNCC 1 cut(s) 301
PsuI RGATCY 1 cut(s) 116
RseI CAYNNNNRTG 1 cut(s) 245
SatI GCNGC 1 cut(s) 146
Sau3AI GATC 1 cut(s) 116
Sau96I GGNCC 1 cut(s) 301
ScrFI CCNGG 1 cut(s) 121
SetI ASST 3 cut(s) 9, 163, 303
SfaNI GCATC 2 cut(s) 117, 240
SinI GGWCC 1 cut(s) 301
SmiMI CAYNNNNRTG 1 cut(s) 245
SsiI CCGC 1 cut(s) 145
StyD4I CCNGG 1 cut(s) 119
StyI CCWWGG 1 cut(s) 304
TauI GCSGC 1 cut(s) 148
TfiI GAWTC 1 cut(s) 215
TspDTI ATGAA 1 cut(s) 42
VpaK11BI GGWCC 1 cut(s) 301
XmnI GAANNNNTTC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.