Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005337

Physical Location & Seq

Genomic Coordinates Forward (+)

29895582 .. 29900127

Gene Structure 4546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g30090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGAAGTGTCGTCGGCAATATCGGAGATTATATTGGAGGAATGGAATGGTTCATCTTCAACTAAACTCTCCAGAACTGCCACTATAACTTCGTCTCCTTCACTCGTCATCCAAAGATCCGGGAACCGGTTCGACCATGTTTGGCAGCGAATGCTTCAGGCATTTGTACCCGAGGGCTTTCCTAGTAGTGTTACTCCGGATTATGTTCCTTTTCAAATGTGGGATTCACTTCAGGGTCTTTCTACTTACATTCGGATGATGCTTTCTACCCAAGCTCTACTGGGTGCTATTGGGGTCGGTGAGAAGTCGGCAACTGTGATTGGTGCCACCTTTCAGTGGTTCTTGAGGGACTTAACTGGAATGCTGGGAGGCATCTTATTCACATTTTATCAGGGCTCAAATCTGGATAGCAATGCTAAAATGTGGCGCTTAGTTGCAGATCTTATGAATGATCTTGGAATGTTGATGGACCTTGTTTCACCTTTGTTTCCATCTGCTTTTGTGTTTGTGGTCTGTCTAGGAAGCCTATCGAGATCCTTCACCGGTGTTGCAAGTGGAGCAACTAGAGCTGCTTTGACGCAACATTTTGCCCTTCAGAGTAATGCTGCAGATATATCTGCCAAGGAAGGAAGTCAAGAAACTATGGCAACGATGATTGGTATGGCACTAGGCATGCTTCTTGCCCGTGCTACTATGGAGCGCCCCCTAGCTATTTGGTTTTCTTTTTTGTCTCTCACCATGTTTCATATGTATGCAAACTACAAGGCTGTCCGGTGCCTTGCATTAAATTCTTTGAACCCTGAGAGGTGCTCAATTCTTTTGCAGCATTTTATGAAAACCGGAAAAGTTCTCTCCCCTGAACAGGTCTCTAAGATGGAGCATGTTTTACCCATATGGGTATCTTCATGGAGCTCAAAGAATTCAGAGTTCATGAATGTGGATATATGTCTAGGTGTCAGGGTCTCCTCACTAAATCACCTGGAAATGAGGGAATTATTGCATTCTGTGAGCTCTCATTACAAGAAAGCCAAGTACTTGCTAATGGAAAGGAAAGGAATTGTCTGCGTTGTTATGCATAAGGATTCTACTGCCACAGATGTGTTGCAGTCATTATTCCATGCAAATGCAATGGCGATTCTAATGGATAAACACCGAAATCTTCATTCTGAAAGCCAATCATGGATGGATAAACATTATGAAGCTTTCATTCAAAAGCTAAAGTTATCTGGTTGGAAAACAGAACGTCTTTTATCACCGATGATCATTTGGAAGGCAAACTGGATCTGTGGGTCTTCCGATGGCAAGATTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF647

Protein Analysis

438

Amino Acids

48.83

Weight (kDa)

8.64

Isoelectric Point (pI)

45.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UVB_sens_prot	PF04884	45 - 280	1.7e-91	Vitamin B6 photo-protection and homoeostasis domain
UVB_sens_C	PF24160	283 - 382	4.6e-08	Root UVB sensitive protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13770 AT1G13770 AT1G13770 AT1G13770
fragaria_vesca	FvH4_4g30090 FvH4_4g30090 FvH4_4g30090 FvH4_4g30090 FvH4_4g30090
malus_domestica	MD16G1061400.v1.1
prunus_persica	Prupe.1G286700_v2.0.a1 Prupe.1G286700_v2.0.a1 Prupe.1G286700_v2.0.a1 Prupe.1G286700_v2.0.a1 Prupe.1G286700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0438371 RchiOBHm_Chr4g0438391
rosa_multiflora	Rmu_sc0002327.1_g000026
rosa_roxburghii	Rroxscaffold_5G00379420
rosa_rugosa	Rorug04G0309300 Rorug04G0309400 Rorug04G0309500 Rorug04G0309600
rosa_samantha	Rh4AG360400 Rh4BG371300 Rh4CG385300 Rh4DG366200
rosa_wichuraiana	Rw0G006500 Rw0G016450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	323, 774
AccIII	TCCGGA	1 cut(s)	196
AclWI	GGATC	3 cut(s)	111, 528, 1289
AcsI	RAATTY	2 cut(s)	787, 919
AcuI	CTGAAG	3 cut(s)	140, 215, 578
AfaI	GTAC	2 cut(s)	168, 1034
AfiI	CCNNNNNNNGG	3 cut(s)	126, 336, 862
AgeI	ACCGGT	2 cut(s)	126, 542
AgsI	TTSAA	4 cut(s)	60, 215, 796, 1211
AjnI	CCWGG	1 cut(s)	978
AleI	CACNNNNGTG	1 cut(s)	1097
AluBI	AGCT	7 cut(s)	275, 569, 710, 912, 1011, 1202, 1216
AluI	AGCT	7 cut(s)	275, 569, 710, 912, 1011, 1202, 1216
Alw21I	GWGCWC	3 cut(s)	812, 914, 1013
Alw26I	GTCTC	4 cut(s)	99, 735, 871, 967
AlwI	GGATC	3 cut(s)	111, 528, 1289
Ama87I	CYCGRG	1 cut(s)	170
Aor13HI	TCCGGA	1 cut(s)	196
ApeKI	GCWGC	4 cut(s)	145, 569, 605, 823
ApoI	RAATTY	2 cut(s)	787, 919
AsiGI	ACCGGT	2 cut(s)	126, 542
Asp700I	GAANNNNTTC	1 cut(s)	128
AspLEI	GCGC	2 cut(s)	429, 702
AspS9I	GGNCC	1 cut(s)	469
AsuC2I	CCSGG	1 cut(s)	121
AsuHPI	GGTGA	6 cut(s)	311, 471, 532, 727, 968, 1245
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	469
BanI	GGYRCC	2 cut(s)	323, 774
BanII	GRGCYC	3 cut(s)	398, 914, 1013
BbsI	GAAGAC	1 cut(s)	1284
Bbv12I	GWGCWC	3 cut(s)	812, 914, 1013
BbvI	GCAGC	4 cut(s)	157, 556, 592, 835
BccI	CCATC	5 cut(s)	460, 499, 868, 1177, 1292
BciT130I	CCWGG	1 cut(s)	980
BclI	TGATCA	1 cut(s)	1260
BcnI	CCSGG	1 cut(s)	121
BcoDI	GTCTC	4 cut(s)	99, 735, 871, 967
BfaI	CTAG	7 cut(s)	183, 518, 564, 668, 707, 950, 1312
BfmI	CTRYAG	1 cut(s)	606
BfoI	RGCGCY	2 cut(s)	430, 703
BglII	AGATCT	1 cut(s)	439
BisI	GCNGC	4 cut(s)	146, 570, 606, 824
BlsI	GCNGC	4 cut(s)	147, 571, 607, 825
BmcAI	AGTACT	1 cut(s)	1034
Bme1390I	CCNGG	2 cut(s)	121, 980
Bme18I	GGWCC	1 cut(s)	469
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	469
BmiI	GGNNCC	3 cut(s)	125, 325, 776
BmrFI	CCNGG	2 cut(s)	121, 980
BmrI	ACTGGG	1 cut(s)	290
BmsI	GCATC	2 cut(s)	249, 381
BmuI	ACTGGG	1 cut(s)	290
BpiI	GAAGAC	1 cut(s)	1284
BplI	GAGNNNNNCTC	2 cut(s)	794, 826
BpmI	CTGGAG	1 cut(s)	55
BpuEI	CTTGAG	1 cut(s)	364
BpuMI	CCSGG	1 cut(s)	121
BsaI	GGTCTC	2 cut(s)	871, 967
BsaJI	CCNNGG	2 cut(s)	171, 621
BsaWI	WCCGGW	5 cut(s)	126, 196, 542, 771, 839
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 336, 862
Bse118I	RCCGGY	2 cut(s)	126, 542
Bse1I	ACTGG	3 cut(s)	285, 361, 1283
Bse3DI	GCAATG	2 cut(s)	418, 1134
BseAI	TCCGGA	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	980
BseDI	CCNNGG	2 cut(s)	171, 621
BseGI	GGATG	3 cut(s)	108, 261, 1188
BseLI	CCNNNNNNNGG	3 cut(s)	126, 336, 862
BseMI	GCAATG	2 cut(s)	418, 1134
BseMII	CTCAG	1 cut(s)	792
BseNI	ACTGG	3 cut(s)	285, 361, 1283
BseRI	GAGGAG	1 cut(s)	955
BseXI	GCAGC	4 cut(s)	157, 556, 592, 835
BseYI	CCCAGC	1 cut(s)	364
BshNI	GGYRCC	2 cut(s)	323, 774
BshTI	ACCGGT	2 cut(s)	126, 542
BsiHKAI	GWGCWC	3 cut(s)	812, 914, 1013
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	6 cut(s)	120, 127, 197, 543, 772, 840
BslFI	GGGAC	1 cut(s)	362
BslI	CCNNNNNNNGG	3 cut(s)	126, 336, 862
BsmAI	GTCTC	4 cut(s)	99, 735, 871, 967
BsmBI	CGTCTC	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	362
BsmI	GAATGC	3 cut(s)	156, 366, 1000
Bso31I	GGTCTC	2 cut(s)	871, 967
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	4 cut(s)	398, 812, 914, 1013
Bsp13I	TCCGGA	1 cut(s)	196
Bsp143I	GATC	6 cut(s)	116, 439, 451, 533, 1260, 1281
BspCNI	CTCAG	1 cut(s)	793
BspEI	TCCGGA	1 cut(s)	196
BspHI	TCATGA	1 cut(s)	930
BspLI	GGNNCC	3 cut(s)	125, 325, 776
BspMAI	CTGCAG	1 cut(s)	610
BspPI	GGATC	3 cut(s)	111, 528, 1289
BspT107I	GGYRCC	2 cut(s)	323, 774
BspTNI	GGTCTC	2 cut(s)	871, 967
BsrDI	GCAATG	2 cut(s)	418, 1134
BsrFI	RCCGGY	2 cut(s)	126, 542
BsrI	ACTGG	3 cut(s)	285, 361, 1283
BssAI	RCCGGY	2 cut(s)	126, 542
BssECI	CCNNGG	2 cut(s)	171, 621
BssMI	GATC	6 cut(s)	116, 439, 451, 533, 1260, 1281
BssT1I	CCWWGG	1 cut(s)	621
Bst2UI	CCWGG	1 cut(s)	980
Bst4CI	ACNGT	1 cut(s)	316
BstAPI	GCANNNNNTGC	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	674
BstDEI	CTNAG	3 cut(s)	430, 801, 870
BstF5I	GGATG	3 cut(s)	108, 261, 1188
BstH2I	RGCGCY	2 cut(s)	430, 703
BstHHI	GCGC	2 cut(s)	429, 702
BstKTI	GATC	6 cut(s)	119, 442, 454, 536, 1263, 1284
BstMAI	GTCTC	4 cut(s)	99, 735, 871, 967
BstMBI	GATC	6 cut(s)	116, 439, 451, 533, 1260, 1281
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 557, 566
BstNI	CCWGG	1 cut(s)	980
BstNSI	RCATGY	2 cut(s)	676, 884
BstSCI	CCNGG	2 cut(s)	119, 978
BstSFI	CTRYAG	1 cut(s)	606
BstV1I	GCAGC	4 cut(s)	157, 556, 592, 835
BstV2I	GAAGAC	1 cut(s)	1284
BstX2I	RGATCY	4 cut(s)	116, 439, 533, 1281
BstYI	RGATCY	4 cut(s)	116, 439, 533, 1281
BtsCI	GGATG	3 cut(s)	108, 261, 1188
BtsIMutI	CAGTG	1 cut(s)	341
Cac8I	GCNNGC	1 cut(s)	674
CciI	TCATGA	1 cut(s)	930
CfoI	GCGC	2 cut(s)	429, 702
Cfr10I	RCCGGY	2 cut(s)	126, 542
Cfr13I	GGNCC	1 cut(s)	469
CseI	GACGC	1 cut(s)	586
Csp6I	GTAC	2 cut(s)	167, 1033
CspAI	ACCGGT	2 cut(s)	126, 542
CviAII	CATG	8 cut(s)	137, 673, 739, 881, 906, 931, 1118, 1179
CviQI	GTAC	2 cut(s)	167, 1033
DdeI	CTNAG	3 cut(s)	430, 801, 870
DpnI	GATC	6 cut(s)	118, 441, 453, 535, 1262, 1283
DpnII	GATC	6 cut(s)	116, 439, 451, 533, 1260, 1281
Ecl136II	GAGCTC	2 cut(s)	912, 1011
Eco130I	CCWWGG	1 cut(s)	621
Eco24I	GRGCYC	3 cut(s)	398, 914, 1013
Eco31I	GGTCTC	2 cut(s)	871, 967
Eco47I	GGWCC	1 cut(s)	469
Eco53kI	GAGCTC	2 cut(s)	912, 1011
Eco57I	CTGAAG	3 cut(s)	140, 215, 578
Eco88I	CYCGRG	1 cut(s)	170
EcoICRI	GAGCTC	2 cut(s)	912, 1011
EcoRI	GAATTC	1 cut(s)	919
EcoRII	CCWGG	1 cut(s)	978
EcoT14I	CCWWGG	1 cut(s)	621
EcoT22I	ATGCAT	1 cut(s)	1077
EcoT38I	GRGCYC	3 cut(s)	398, 914, 1013
ErhI	CCWWGG	1 cut(s)	621
Esp3I	CGTCTC	1 cut(s)	99
FaeI	CATG	8 cut(s)	140, 676, 742, 884, 909, 934, 1121, 1182
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	8 cut(s)	136, 672, 738, 880, 905, 930, 1117, 1178
FauNDI	CATATG	2 cut(s)	747, 893
FbaI	TGATCA	1 cut(s)	1260
Fnu4HI	GCNGC	4 cut(s)	146, 570, 606, 824
FokI	GGATG	3 cut(s)	95, 268, 1195
FriOI	GRGCYC	3 cut(s)	398, 914, 1013
Fsp4HI	GCNGC	4 cut(s)	146, 570, 606, 824
FspBI	CTAG	7 cut(s)	183, 518, 564, 668, 707, 950, 1312
GlaI	GCGC	2 cut(s)	428, 701
GluI	GCNGC	4 cut(s)	146, 570, 606, 824
GsaI	CCCAGC	1 cut(s)	368
GsuI	CTGGAG	1 cut(s)	55
HaeII	RGCGCY	2 cut(s)	430, 703
HapII	CCGG	6 cut(s)	120, 127, 197, 543, 772, 840
HgaI	GACGC	1 cut(s)	586
HhaI	GCGC	2 cut(s)	429, 702
Hin1II	CATG	8 cut(s)	140, 676, 742, 884, 909, 934, 1121, 1182
Hin6I	GCGC	2 cut(s)	427, 700
HinP1I	GCGC	2 cut(s)	427, 700
HindIII	AAGCTT	1 cut(s)	1200
HinfI	GANTC	3 cut(s)	224, 1082, 1135
HpaII	CCGG	6 cut(s)	120, 127, 197, 543, 772, 840
HphI	GGTGA	6 cut(s)	311, 471, 532, 727, 968, 1245
Hpy188I	TCNGA	6 cut(s)	25, 255, 597, 925, 1168, 1297
Hpy188III	TCNNGA	7 cut(s)	72, 197, 343, 404, 531, 635, 931
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	5 cut(s)	108, 547, 602, 620, 1264
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4IV	ACGT	1 cut(s)	1243
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 557, 566
HpyF3I	CTNAG	3 cut(s)	430, 801, 870
HpySE526I	ACGT	1 cut(s)	1243
Hsp92II	CATG	8 cut(s)	140, 676, 742, 884, 909, 934, 1121, 1182
HspAI	GCGC	2 cut(s)	427, 700
Kpn2I	TCCGGA	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	1260
Kzo9I	GATC	6 cut(s)	116, 439, 451, 533, 1260, 1281
LmnI	GCTCC	4 cut(s)	557, 697, 877, 909
Lsp1109I	GCAGC	4 cut(s)	157, 556, 592, 835
LweI	GCATC	2 cut(s)	249, 381
MaeI	CTAG	7 cut(s)	183, 518, 564, 668, 707, 950, 1312
MaeII	ACGT	1 cut(s)	1243
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	6 cut(s)	118, 441, 453, 535, 1262, 1283
MboI	GATC	6 cut(s)	116, 439, 451, 533, 1260, 1281
MboII	GAAGA	4 cut(s)	48, 894, 1151, 1284
MflI	RGATCY	4 cut(s)	116, 439, 533, 1281
MhlI	GDGCHC	4 cut(s)	398, 812, 914, 1013
MluCI	AATT	5 cut(s)	787, 813, 919, 992, 1056
MmeI	TCCRAC	1 cut(s)	1211
MnlI	CCTC	7 cut(s)	31, 166, 339, 362, 798, 976, 981
Mph1103I	ATGCAT	1 cut(s)	1077
MroI	TCCGGA	1 cut(s)	196
MroXI	GAANNNNTTC	1 cut(s)	128
MseI	TTAA	2 cut(s)	353, 785
MslI	CAYNNNNRTG	5 cut(s)	254, 750, 935, 1097, 1122
MspI	CCGG	6 cut(s)	120, 127, 197, 543, 772, 840
MspR9I	CCNGG	2 cut(s)	121, 980
Mva1269I	GAATGC	3 cut(s)	156, 366, 1000
MvaI	CCWGG	1 cut(s)	980
MwoI	GCNNNNNNNGC	3 cut(s)	151, 557, 566
NciI	CCSGG	1 cut(s)	121
NdeI	CATATG	2 cut(s)	747, 893
NdeII	GATC	6 cut(s)	116, 439, 451, 533, 1260, 1281
NlaIII	CATG	8 cut(s)	140, 676, 742, 884, 909, 934, 1121, 1182
NlaIV	GGNNCC	3 cut(s)	125, 325, 776
NsiI	ATGCAT	1 cut(s)	1077
NspI	RCATGY	2 cut(s)	676, 884
OliI	CACNNNNGTG	1 cut(s)	1097
PaeI	GCATGC	1 cut(s)	676
PagI	TCATGA	1 cut(s)	930
PctI	GAATGC	3 cut(s)	156, 366, 1000
PdmI	GAANNNNTTC	1 cut(s)	128
PfeI	GAWTC	3 cut(s)	224, 1082, 1135
PfoI	TCCNGGA	1 cut(s)	119
PinAI	ACCGGT	2 cut(s)	126, 542
PkrI	GCNGC	4 cut(s)	147, 571, 607, 825
Psp124BI	GAGCTC	2 cut(s)	914, 1013
Psp6I	CCWGG	1 cut(s)	978
PspFI	CCCAGC	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	978
PspN4I	GGNNCC	3 cut(s)	125, 325, 776
PspPI	GGNCC	1 cut(s)	469
PstI	CTGCAG	1 cut(s)	610
PsuI	RGATCY	4 cut(s)	116, 439, 533, 1281
RsaI	GTAC	2 cut(s)	168, 1034
RsaNI	GTAC	2 cut(s)	167, 1033
RseI	CAYNNNNRTG	5 cut(s)	254, 750, 935, 1097, 1122
SacI	GAGCTC	2 cut(s)	914, 1013
SaqAI	TTAA	2 cut(s)	353, 785
SatI	GCNGC	4 cut(s)	146, 570, 606, 824
Sau3AI	GATC	6 cut(s)	116, 439, 451, 533, 1260, 1281
Sau96I	GGNCC	1 cut(s)	469
ScaI	AGTACT	1 cut(s)	1034
ScrFI	CCNGG	2 cut(s)	121, 980
SduI	GDGCHC	4 cut(s)	398, 812, 914, 1013
SfaNI	GCATC	2 cut(s)	249, 381
SfcI	CTRYAG	1 cut(s)	606
SgrAI	CRCCGGYG	1 cut(s)	542
SinI	GGWCC	1 cut(s)	469
SmiMI	CAYNNNNRTG	5 cut(s)	254, 750, 935, 1097, 1122
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
SphI	GCATGC	1 cut(s)	676
Sse9I	AATT	5 cut(s)	787, 813, 919, 992, 1056
SspMI	CTAG	7 cut(s)	183, 518, 564, 668, 707, 950, 1312
SstI	GAGCTC	2 cut(s)	914, 1013
StyD4I	CCNGG	2 cut(s)	119, 978
StyI	CCWWGG	1 cut(s)	621
TaaI	ACNGT	1 cut(s)	316
TaiI	ACGT	1 cut(s)	1246
TaqI	TCGA	2 cut(s)	132, 530
TasI	AATT	5 cut(s)	787, 813, 919, 992, 1056
TatI	WGTACW	1 cut(s)	1032
TfiI	GAWTC	3 cut(s)	224, 1082, 1135
Tru1I	TTAA	2 cut(s)	353, 785
Tru9I	TTAA	2 cut(s)	353, 785
TscAI	CASTG	1 cut(s)	341
TseI	GCWGC	4 cut(s)	145, 569, 605, 823
TspRI	CASTG	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	469
XapI	RAATTY	2 cut(s)	787, 919
XceI	RCATGY	2 cut(s)	676, 884
XmnI	GAANNNNTTC	1 cut(s)	128
XspI	CTAG	7 cut(s)	183, 518, 564, 668, 707, 950, 1312
ZrmI	AGTACT	1 cut(s)	1034
Zsp2I	ATGCAT	1 cut(s)	1077

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.