Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0005337

Physical Location & Seq

Genomic Coordinates Forward (+)

58665447 .. 58670387

Gene Structure 4941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG366200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGTGGGATTCACTTCAGGGTCTTTCTACTTACATAAGGATGATGCTTTCTACCCAAGCTCTGCTGGGAGCTATTGGGGTCGGTGAGAAATCAGCCACTGTGATTGGTGCCACCTTTCAGTGGTTCTTGAGGGACTTGACTGGAATGCTGGGAGGTATCTTATTCACATTTTATCAGGGCTCAAATCTGGATAGCAATGCTAAAATGTGGCGCTTAGTTGCAGATCTTATGAATGACCTTGCAATGTTGATGGACCTTGTTTCGCCTTTGTTTCCATCTGCTTTTGTGTTTGTGGTCTGTCTAGGAAGCCTATCGAGATCATTCACAAACTACAAGGCTGTCCGGTGCCTTGCATTAAATTCTTTGAACCCTCAGAGGTGCTCAATTCTTTTGCAGCATTTTATGAAAACCGGCAAAGTTCTCTCACCTGAACAGGTATCTAAGATGGAGCATGTTTTACCCATATGGGCATCTTCATGGAGCTCAAAGAATTCAGAGTCGATGAATGTGGATATATCTCTAGGTGTCAGGGTCTCCTCACTAAATCACCTGGAACTGAGGGAGTTATTGCATTCTGCGGGCTTTCATTACAAGAAAGCCAAGTACTTGCTGGTGGAAAGGAAAGGAATTGTCTGCATTGTTATGCACAAAGATTCTGCTGCCACAGATGTCTTGCAGTCATTTTTTCATGCAAATGCAATGGCAAATCTAATGGATAAACACCGAAGTCTTCATTCTGAAAGCCAATCATGGATGGATAAACATTATGAAGCTTTCATTCAAAAGTTAAAGGTATCTGGTTGGAAAACAGAACGTCTTTTATCACCAACGATCATTTGGAAGGCAAACTGGATCTGTGGGTCTTCTGATGGCAAGATTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF647

Protein Analysis

294

Amino Acids

33.05

Weight (kDa)

9.15

Isoelectric Point (pI)

43.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UVB_sens_prot	PF04884	1 - 108	1.2e-36	Vitamin B6 photo-protection and homoeostasis domain
UVB_sens_C	PF24160	140 - 284	3.1e-11	Root UVB sensitive protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13770 AT1G13770 AT1G13770 AT1G13770
fragaria_vesca	FvH4_4g30090 FvH4_4g30090 FvH4_4g30090 FvH4_4g30090 FvH4_4g30090
malus_domestica	MD16G1061400.v1.1
prunus_persica	Prupe.1G286700_v2.0.a1 Prupe.1G286700_v2.0.a1 Prupe.1G286700_v2.0.a1 Prupe.1G286700_v2.0.a1 Prupe.1G286700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0438371 RchiOBHm_Chr4g0438391
rosa_multiflora	Rmu_sc0002327.1_g000026
rosa_roxburghii	Rroxscaffold_5G00379420
rosa_rugosa	Rorug04G0309300 Rorug04G0309400 Rorug04G0309500 Rorug04G0309600
rosa_samantha	Rh4AG360400 Rh4BG371300 Rh4CG385300 Rh4DG366200
rosa_wichuraiana	Rw0G006500 Rw0G016450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	107, 345
AciI	CCGC	1 cut(s)	578
AclWI	GGATC	1 cut(s)	860
AcsI	RAATTY	2 cut(s)	358, 490
AfaI	GTAC	1 cut(s)	605
AfiI	CCNNNNNNNGG	1 cut(s)	120
AgsI	TTSAA	2 cut(s)	367, 782
AjnI	CCWGG	1 cut(s)	549
AluBI	AGCT	4 cut(s)	59, 71, 483, 773
AluI	AGCT	4 cut(s)	59, 71, 483, 773
Alw21I	GWGCWC	2 cut(s)	383, 485
Alw26I	GTCTC	1 cut(s)	538
AlwI	GGATC	1 cut(s)	860
AlwNI	CAGNNNCTG	1 cut(s)	98
ApeKI	GCWGC	2 cut(s)	394, 659
ApoI	RAATTY	2 cut(s)	358, 490
AspLEI	GCGC	1 cut(s)	213
AspS9I	GGNCC	1 cut(s)	253
AsuHPI	GGTGA	4 cut(s)	95, 417, 539, 816
AvaII	GGWCC	1 cut(s)	253
BanI	GGYRCC	2 cut(s)	107, 345
BanII	GRGCYC	2 cut(s)	182, 485
BbsI	GAAGAC	2 cut(s)	722, 855
Bbv12I	GWGCWC	2 cut(s)	383, 485
BbvI	GCAGC	2 cut(s)	406, 646
BccI	CCATC	5 cut(s)	244, 283, 439, 748, 863
BciT130I	CCWGG	1 cut(s)	551
BcoDI	GTCTC	1 cut(s)	538
BfaI	CTAG	3 cut(s)	302, 521, 883
BfoI	RGCGCY	1 cut(s)	214
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	2 cut(s)	395, 660
BlsI	GCNGC	2 cut(s)	396, 661
BmcAI	AGTACT	1 cut(s)	605
Bme1390I	CCNGG	1 cut(s)	551
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	2 cut(s)	109, 347
BmrFI	CCNGG	1 cut(s)	551
BmsI	GCATC	2 cut(s)	33, 479
BpiI	GAAGAC	2 cut(s)	722, 855
BpuEI	CTTGAG	1 cut(s)	148
BsaI	GGTCTC	1 cut(s)	538
BsaWI	WCCGGW	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	1 cut(s)	120
Bse118I	RCCGGY	1 cut(s)	410
Bse1I	ACTGG	2 cut(s)	145, 854
Bse3DI	GCAATG	3 cut(s)	202, 249, 705
BseBI	CCWGG	1 cut(s)	551
BseGI	GGATG	2 cut(s)	45, 759
BseLI	CCNNNNNNNGG	1 cut(s)	120
BseMI	GCAATG	3 cut(s)	202, 249, 705
BseMII	CTCAG	2 cut(s)	386, 548
BseNI	ACTGG	2 cut(s)	145, 854
BseRI	GAGGAG	1 cut(s)	526
BseXI	GCAGC	2 cut(s)	406, 646
BseYI	CCCAGC	2 cut(s)	64, 148
BshNI	GGYRCC	2 cut(s)	107, 345
BsiHKAI	GWGCWC	2 cut(s)	383, 485
BsiSI	CCGG	2 cut(s)	343, 411
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	120
BsmAI	GTCTC	1 cut(s)	538
BsmFI	GGGAC	1 cut(s)	146
BsmI	GAATGC	2 cut(s)	150, 571
Bso31I	GGTCTC	1 cut(s)	538
Bsp1286I	GDGCHC	3 cut(s)	182, 383, 485
Bsp143I	GATC	4 cut(s)	223, 317, 831, 852
BspACI	CCGC	1 cut(s)	578
BspCNI	CTCAG	2 cut(s)	385, 549
BspLI	GGNNCC	2 cut(s)	109, 347
BspPI	GGATC	1 cut(s)	860
BspT107I	GGYRCC	2 cut(s)	107, 345
BspTNI	GGTCTC	1 cut(s)	538
BsrDI	GCAATG	3 cut(s)	202, 249, 705
BsrFI	RCCGGY	1 cut(s)	410
BsrI	ACTGG	2 cut(s)	145, 854
BssAI	RCCGGY	1 cut(s)	410
BssMI	GATC	4 cut(s)	223, 317, 831, 852
Bst2UI	CCWGG	1 cut(s)	551
Bst4CI	ACNGT	1 cut(s)	100
BstC8I	GCNNGC	1 cut(s)	580
BstDEI	CTNAG	4 cut(s)	214, 372, 441, 557
BstF5I	GGATG	2 cut(s)	45, 759
BstH2I	RGCGCY	1 cut(s)	214
BstHHI	GCGC	1 cut(s)	213
BstKTI	GATC	4 cut(s)	226, 320, 834, 855
BstMAI	GTCTC	1 cut(s)	538
BstMBI	GATC	4 cut(s)	223, 317, 831, 852
BstNI	CCWGG	1 cut(s)	551
BstNSI	RCATGY	1 cut(s)	455
BstSCI	CCNGG	1 cut(s)	549
BstV1I	GCAGC	2 cut(s)	406, 646
BstV2I	GAAGAC	2 cut(s)	722, 855
BstX2I	RGATCY	2 cut(s)	223, 852
BstYI	RGATCY	2 cut(s)	223, 852
BtsCI	GGATG	2 cut(s)	45, 759
BtsIMutI	CAGTG	2 cut(s)	96, 125
Cac8I	GCNNGC	1 cut(s)	580
CaiI	CAGNNNCTG	1 cut(s)	98
CfoI	GCGC	1 cut(s)	213
Cfr10I	RCCGGY	1 cut(s)	410
Cfr13I	GGNCC	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	604
CspCI	CAANNNNNGTGG	2 cut(s)	85, 120
CviAII	CATG	4 cut(s)	452, 477, 689, 750
CviQI	GTAC	1 cut(s)	604
DdeI	CTNAG	4 cut(s)	214, 372, 441, 557
DpnI	GATC	4 cut(s)	225, 319, 833, 854
DpnII	GATC	4 cut(s)	223, 317, 831, 852
Ecl136II	GAGCTC	1 cut(s)	483
Eco24I	GRGCYC	2 cut(s)	182, 485
Eco31I	GGTCTC	1 cut(s)	538
Eco47I	GGWCC	1 cut(s)	253
Eco53kI	GAGCTC	1 cut(s)	483
EcoICRI	GAGCTC	1 cut(s)	483
EcoRI	GAATTC	1 cut(s)	490
EcoRII	CCWGG	1 cut(s)	549
EcoT38I	GRGCYC	2 cut(s)	182, 485
FaeI	CATG	4 cut(s)	455, 480, 692, 753
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	4 cut(s)	451, 476, 688, 749
FauI	CCCGC	1 cut(s)	571
FauNDI	CATATG	1 cut(s)	464
Fnu4HI	GCNGC	2 cut(s)	395, 660
FokI	GGATG	2 cut(s)	52, 766
FriOI	GRGCYC	2 cut(s)	182, 485
Fsp4HI	GCNGC	2 cut(s)	395, 660
FspBI	CTAG	3 cut(s)	302, 521, 883
GlaI	GCGC	1 cut(s)	212
GluI	GCNGC	2 cut(s)	395, 660
GsaI	CCCAGC	2 cut(s)	68, 152
HaeII	RGCGCY	1 cut(s)	214
HapII	CCGG	2 cut(s)	343, 411
HhaI	GCGC	1 cut(s)	213
Hin1II	CATG	4 cut(s)	455, 480, 692, 753
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HindIII	AAGCTT	1 cut(s)	771
HinfI	GANTC	3 cut(s)	8, 497, 653
HpaII	CCGG	2 cut(s)	343, 411
HphI	GGTGA	4 cut(s)	95, 417, 539, 816
Hpy188I	TCNGA	4 cut(s)	375, 496, 739, 868
Hpy188III	TCNNGA	3 cut(s)	127, 188, 315
HpyAV	CCTTC	1 cut(s)	835
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4IV	ACGT	1 cut(s)	814
HpyF3I	CTNAG	4 cut(s)	214, 372, 441, 557
HpySE526I	ACGT	1 cut(s)	814
Hsp92II	CATG	4 cut(s)	455, 480, 692, 753
HspAI	GCGC	1 cut(s)	211
Kzo9I	GATC	4 cut(s)	223, 317, 831, 852
LmnI	GCTCC	3 cut(s)	68, 448, 480
Lsp1109I	GCAGC	2 cut(s)	406, 646
LweI	GCATC	2 cut(s)	33, 479
MaeI	CTAG	3 cut(s)	302, 521, 883
MaeII	ACGT	1 cut(s)	814
MalI	GATC	4 cut(s)	225, 319, 833, 854
MboI	GATC	4 cut(s)	223, 317, 831, 852
MboII	GAAGA	3 cut(s)	465, 722, 855
MflI	RGATCY	2 cut(s)	223, 852
MhlI	GDGCHC	3 cut(s)	182, 383, 485
MluCI	AATT	4 cut(s)	358, 384, 490, 627
MlyI	GAGTC	1 cut(s)	506
MmeI	TCCRAC	1 cut(s)	782
MnlI	CCTC	6 cut(s)	123, 146, 369, 381, 547, 552
MseI	TTAA	2 cut(s)	356, 788
MslI	CAYNNNNRTG	4 cut(s)	38, 475, 641, 693
MspI	CCGG	2 cut(s)	343, 411
MspR9I	CCNGG	1 cut(s)	551
Mva1269I	GAATGC	2 cut(s)	150, 571
MvaI	CCWGG	1 cut(s)	551
NdeI	CATATG	1 cut(s)	464
NdeII	GATC	4 cut(s)	223, 317, 831, 852
NlaIII	CATG	4 cut(s)	455, 480, 692, 753
NlaIV	GGNNCC	2 cut(s)	109, 347
NspI	RCATGY	1 cut(s)	455
PctI	GAATGC	2 cut(s)	150, 571
PfeI	GAWTC	2 cut(s)	8, 653
PkrI	GCNGC	2 cut(s)	396, 661
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
Psp124BI	GAGCTC	1 cut(s)	485
Psp6I	CCWGG	1 cut(s)	549
PspFI	CCCAGC	2 cut(s)	64, 148
PspGI	CCWGG	1 cut(s)	549
PspN4I	GGNNCC	2 cut(s)	109, 347
PspPI	GGNCC	1 cut(s)	253
PstNI	CAGNNNCTG	1 cut(s)	98
PsuI	RGATCY	2 cut(s)	223, 852
RsaI	GTAC	1 cut(s)	605
RsaNI	GTAC	1 cut(s)	604
RseI	CAYNNNNRTG	4 cut(s)	38, 475, 641, 693
SacI	GAGCTC	1 cut(s)	485
SaqAI	TTAA	2 cut(s)	356, 788
SatI	GCNGC	2 cut(s)	395, 660
Sau3AI	GATC	4 cut(s)	223, 317, 831, 852
Sau96I	GGNCC	1 cut(s)	253
ScaI	AGTACT	1 cut(s)	605
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	1 cut(s)	551
SduI	GDGCHC	3 cut(s)	182, 383, 485
SfaNI	GCATC	2 cut(s)	33, 479
SinI	GGWCC	1 cut(s)	253
SmiMI	CAYNNNNRTG	4 cut(s)	38, 475, 641, 693
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	4 cut(s)	358, 384, 490, 627
SsiI	CCGC	1 cut(s)	578
SspMI	CTAG	3 cut(s)	302, 521, 883
SstI	GAGCTC	1 cut(s)	485
StyD4I	CCNGG	1 cut(s)	549
TaaI	ACNGT	1 cut(s)	100
TaiI	ACGT	1 cut(s)	817
TaqI	TCGA	2 cut(s)	314, 500
TasI	AATT	4 cut(s)	358, 384, 490, 627
TatI	WGTACW	1 cut(s)	603
TfiI	GAWTC	2 cut(s)	8, 653
Tru1I	TTAA	2 cut(s)	356, 788
Tru9I	TTAA	2 cut(s)	356, 788
TscAI	CASTG	2 cut(s)	103, 125
TseI	GCWGC	2 cut(s)	394, 659
TspDTI	ATGAA	9 cut(s)	245, 419, 465, 518, 575, 677, 722, 766, 783
TspRI	CASTG	2 cut(s)	103, 125
VpaK11BI	GGWCC	1 cut(s)	253
XapI	RAATTY	2 cut(s)	358, 490
XceI	RCATGY	1 cut(s)	455
XcmI	CCANNNNNNNNNTGG	2 cut(s)	607, 834
XspI	CTAG	3 cut(s)	302, 521, 883
ZrmI	AGTACT	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.