Rh4CG385300

UPF0420 protein C16orf58 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0005337
Physical Location & Seq
Forward (+)
63751205 .. 63755023
3819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG385300.1

Sequence Viewer

Length: 777 bp
ATGGAGGTATCGTCGGCAATATCGGAGATTATATTGGAAGAATGGAATGGTTCATCTTCAACCAAACTCTCCAGAACTGCCACTATAACTTCGTCTCCTTCACTCTGCATCCAAAGATCCGGGAACCGGTTCCACCATGTTTGGCGGCGAGTTCTTCAAGCATTTGTACCTGAGGGCTTTCCCAGTAGTGTTACTCCAGATTATGTCCCTTTTCAAATGTGGGATTCACTTCAGGGTCTTTCTACTTACATAAGGATGATGCTTTCTACCCAAGCTCTGCTGGGTGCTATTGGGGTCGGTGAGAAATCAGCCACTGTGATTGGTGCCACCTTTCAGTGGTTCTTGAGGGACTTGACTGGAATGCTGGGAGGTATCTTATTCACATTTTATCAGGGCTCAAATCTGGATTGCAATGCTAAAATGTGGCGCTTAGTTGCAGATCTTATGAATGACCTTGGAATGTTGATGGACCTTGTTTCGCCTTTGTTTCCATCTGCTTTTGTGTTTGTGGTCTGTCTAGGAAGCCTATCGAGATCATTCACAAACTACAAGGCTGTCCGGTGCCTTGCATTAAATTCTTTGAACCCTCAGAGGTGCTCAATTCTTTTGCAGCATTTTATGAAAACCGGCAAAGTTCTCTCACCTGAACAGGTATCTAAGATGGAGCATGTTTTACCCATATGGGCATCTTCATGGAGCTCAAAGAATTCAGAGTCGATGAATGTGGATATATCTCTAGGTGTCAGGGTCTCCTCACTAAATCACCTGGAACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF647

Protein Analysis

258

Amino Acids

28.64

Weight (kDa)

8.3

Isoelectric Point (pI)

47.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UVB_sens_prot PF04884 44 - 180 7.9e-52 Vitamin B6 photo-protection and homoeostasis domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 323, 561
AciI CCGC 1 cut(s) 145
AclWI GGATC 1 cut(s) 111
AcsI RAATTY 2 cut(s) 574, 706
AcuI CTGAAG 1 cut(s) 215
AfaI GTAC 1 cut(s) 168
AfiI CCNNNNNNNGG 2 cut(s) 126, 336
AgeI ACCGGT 1 cut(s) 126
AgsI TTSAA 4 cut(s) 60, 158, 215, 583
AjnI CCWGG 1 cut(s) 765
AluBI AGCT 2 cut(s) 275, 699
AluI AGCT 2 cut(s) 275, 699
Alw21I GWGCWC 2 cut(s) 599, 701
Alw26I GTCTC 2 cut(s) 99, 754
AlwI GGATC 1 cut(s) 111
AlwNI CAGNNNCTG 1 cut(s) 314
ApeKI GCWGC 1 cut(s) 610
ApoI RAATTY 2 cut(s) 574, 706
AsiGI ACCGGT 1 cut(s) 126
Asp700I GAANNNNTTC 1 cut(s) 128
AspLEI GCGC 1 cut(s) 429
AspS9I GGNCC 1 cut(s) 469
AsuC2I CCSGG 1 cut(s) 121
AsuHPI GGTGA 3 cut(s) 311, 633, 755
AvaII GGWCC 1 cut(s) 469
AxyI CCTNAGG 1 cut(s) 171
BanI GGYRCC 2 cut(s) 323, 561
BanII GRGCYC 2 cut(s) 398, 701
Bbv12I GWGCWC 2 cut(s) 599, 701
BbvI GCAGC 1 cut(s) 622
BccI CCATC 3 cut(s) 460, 499, 655
BciT130I CCWGG 1 cut(s) 767
BcnI CCSGG 1 cut(s) 121
BcoDI GTCTC 2 cut(s) 99, 754
BfaI CTAG 2 cut(s) 518, 737
BfoI RGCGCY 1 cut(s) 430
BglII AGATCT 1 cut(s) 439
BisI GCNGC 2 cut(s) 146, 611
BlsI GCNGC 2 cut(s) 147, 612
Bme1390I CCNGG 2 cut(s) 121, 767
Bme18I GGWCC 1 cut(s) 469
BmgT120I GGNCC 1 cut(s) 469
BmiI GGNNCC 4 cut(s) 125, 131, 325, 563
BmrFI CCNGG 2 cut(s) 121, 767
BmrI ACTGGG 1 cut(s) 177
BmsI GCATC 3 cut(s) 117, 249, 695
BmuI ACTGGG 1 cut(s) 177
BpmI CTGGAG 2 cut(s) 55, 180
BpuEI CTTGAG 1 cut(s) 364
BpuMI CCSGG 1 cut(s) 121
BsaI GGTCTC 1 cut(s) 754
BsaJI CCNNGG 1 cut(s) 454
BsaWI WCCGGW 2 cut(s) 126, 558
BsaXI ACNNNNNCTCC 3 cut(s) 26, 79, 109
Bsc4I CCNNNNNNNGG 2 cut(s) 126, 336
Bse118I RCCGGY 2 cut(s) 126, 626
Bse1I ACTGG 2 cut(s) 183, 361
Bse21I CCTNAGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 418
BseBI CCWGG 1 cut(s) 767
BseDI CCNNGG 1 cut(s) 454
BseGI GGATG 2 cut(s) 108, 261
BseLI CCNNNNNNNGG 2 cut(s) 126, 336
BseMI GCAATG 1 cut(s) 418
BseMII CTCAG 2 cut(s) 162, 602
BseNI ACTGG 2 cut(s) 183, 361
BseRI GAGGAG 1 cut(s) 742
BseXI GCAGC 1 cut(s) 622
BseYI CCCAGC 2 cut(s) 280, 364
BshNI GGYRCC 2 cut(s) 323, 561
BshTI ACCGGT 1 cut(s) 126
BsiHKAI GWGCWC 2 cut(s) 599, 701
BsiSI CCGG 4 cut(s) 120, 127, 559, 627
BslFI GGGAC 2 cut(s) 191, 362
BslI CCNNNNNNNGG 2 cut(s) 126, 336
BsmAI GTCTC 2 cut(s) 99, 754
BsmBI CGTCTC 1 cut(s) 99
BsmFI GGGAC 2 cut(s) 191, 362
BsmI GAATGC 1 cut(s) 366
Bso31I GGTCTC 1 cut(s) 754
Bsp1286I GDGCHC 3 cut(s) 398, 599, 701
Bsp143I GATC 3 cut(s) 116, 439, 533
BspACI CCGC 1 cut(s) 145
BspCNI CTCAG 2 cut(s) 163, 601
BspLI GGNNCC 4 cut(s) 125, 131, 325, 563
BspPI GGATC 1 cut(s) 111
BspT107I GGYRCC 2 cut(s) 323, 561
BspTNI GGTCTC 1 cut(s) 754
BsrDI GCAATG 1 cut(s) 418
BsrFI RCCGGY 2 cut(s) 126, 626
BsrI ACTGG 2 cut(s) 183, 361
BssAI RCCGGY 2 cut(s) 126, 626
BssECI CCNNGG 1 cut(s) 454
BssMI GATC 3 cut(s) 116, 439, 533
BssT1I CCWWGG 1 cut(s) 454
Bst2UI CCWGG 1 cut(s) 767
Bst4CI ACNGT 2 cut(s) 316, 774
BstDEI CTNAG 4 cut(s) 171, 430, 588, 657
BstF5I GGATG 2 cut(s) 108, 261
BstH2I RGCGCY 1 cut(s) 430
BstHHI GCGC 1 cut(s) 429
BstKTI GATC 3 cut(s) 119, 442, 536
BstMAI GTCTC 2 cut(s) 99, 754
BstMBI GATC 3 cut(s) 116, 439, 533
BstNI CCWGG 1 cut(s) 767
BstNSI RCATGY 1 cut(s) 671
BstSCI CCNGG 2 cut(s) 119, 765
BstV1I GCAGC 1 cut(s) 622
BstX2I RGATCY 2 cut(s) 116, 439
BstYI RGATCY 2 cut(s) 116, 439
Bsu36I CCTNAGG 1 cut(s) 171
BtsCI GGATG 2 cut(s) 108, 261
BtsIMutI CAGTG 2 cut(s) 312, 341
CaiI CAGNNNCTG 1 cut(s) 314
CfoI GCGC 1 cut(s) 429
Cfr10I RCCGGY 2 cut(s) 126, 626
Cfr13I GGNCC 1 cut(s) 469
Csp6I GTAC 1 cut(s) 167
CspAI ACCGGT 1 cut(s) 126
CspCI CAANNNNNGTGG 4 cut(s) 122, 157, 301, 336
CviAII CATG 3 cut(s) 137, 668, 693
CviJI RGCY 7 cut(s) 177, 275, 311, 396, 525, 554, 699
CviKI_1 RGCY 7 cut(s) 177, 275, 311, 396, 525, 554, 699
CviQI GTAC 1 cut(s) 167
DdeI CTNAG 4 cut(s) 171, 430, 588, 657
DpnI GATC 3 cut(s) 118, 441, 535
DpnII GATC 3 cut(s) 116, 439, 533
Ecl136II GAGCTC 1 cut(s) 699
Eco130I CCWWGG 1 cut(s) 454
Eco24I GRGCYC 2 cut(s) 398, 701
Eco31I GGTCTC 1 cut(s) 754
Eco47I GGWCC 1 cut(s) 469
Eco53kI GAGCTC 1 cut(s) 699
Eco57I CTGAAG 1 cut(s) 215
Eco81I CCTNAGG 1 cut(s) 171
EcoICRI GAGCTC 1 cut(s) 699
EcoRI GAATTC 1 cut(s) 706
EcoRII CCWGG 1 cut(s) 765
EcoT14I CCWWGG 1 cut(s) 454
EcoT38I GRGCYC 2 cut(s) 398, 701
ErhI CCWWGG 1 cut(s) 454
Esp3I CGTCTC 1 cut(s) 99
FaeI CATG 3 cut(s) 140, 671, 696
FaqI GGGAC 2 cut(s) 191, 362
FatI CATG 3 cut(s) 136, 667, 692
FauNDI CATATG 1 cut(s) 680
Fnu4HI GCNGC 2 cut(s) 146, 611
FokI GGATG 2 cut(s) 95, 268
FriOI GRGCYC 2 cut(s) 398, 701
Fsp4HI GCNGC 2 cut(s) 146, 611
FspBI CTAG 2 cut(s) 518, 737
GlaI GCGC 1 cut(s) 428
GluI GCNGC 2 cut(s) 146, 611
GsaI CCCAGC 2 cut(s) 284, 368
GsuI CTGGAG 2 cut(s) 55, 180
HaeII RGCGCY 1 cut(s) 430
HapII CCGG 4 cut(s) 120, 127, 559, 627
HhaI GCGC 1 cut(s) 429
Hin1II CATG 3 cut(s) 140, 671, 696
Hin6I GCGC 1 cut(s) 427
HinP1I GCGC 1 cut(s) 427
HinfI GANTC 2 cut(s) 224, 713
HpaII CCGG 4 cut(s) 120, 127, 559, 627
HphI GGTGA 3 cut(s) 311, 633, 755
Hpy188I TCNGA 3 cut(s) 25, 591, 712
Hpy188III TCNNGA 5 cut(s) 72, 197, 343, 404, 531
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 1 cut(s) 108
HpyCH4III ACNGT 2 cut(s) 316, 774
HpyCH4V TGCA 5 cut(s) 108, 411, 437, 569, 610
HpyF3I CTNAG 4 cut(s) 171, 430, 588, 657
Hsp92II CATG 3 cut(s) 140, 671, 696
HspAI GCGC 1 cut(s) 427
Kzo9I GATC 3 cut(s) 116, 439, 533
LmnI GCTCC 2 cut(s) 664, 696
Lsp1109I GCAGC 1 cut(s) 622
LweI GCATC 3 cut(s) 117, 249, 695
MaeI CTAG 2 cut(s) 518, 737
MaeIII GTNAC 1 cut(s) 190
MalI GATC 3 cut(s) 118, 441, 535
MboI GATC 3 cut(s) 116, 439, 533
MboII GAAGA 4 cut(s) 48, 50, 146, 681
MflI RGATCY 2 cut(s) 116, 439
MhlI GDGCHC 3 cut(s) 398, 599, 701
MluCI AATT 3 cut(s) 574, 600, 706
MlyI GAGTC 1 cut(s) 722
MnlI CCTC 6 cut(s) 166, 339, 362, 585, 597, 763
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 1 cut(s) 572
MslI CAYNNNNRTG 2 cut(s) 254, 691
MspI CCGG 4 cut(s) 120, 127, 559, 627
MspR9I CCNGG 2 cut(s) 121, 767
Mva1269I GAATGC 1 cut(s) 366
MvaI CCWGG 1 cut(s) 767
NciI CCSGG 1 cut(s) 121
NdeI CATATG 1 cut(s) 680
NdeII GATC 3 cut(s) 116, 439, 533
NlaIII CATG 3 cut(s) 140, 671, 696
NlaIV GGNNCC 4 cut(s) 125, 131, 325, 563
NspI RCATGY 1 cut(s) 671
PctI GAATGC 1 cut(s) 366
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 224
PfoI TCCNGGA 1 cut(s) 119
PinAI ACCGGT 1 cut(s) 126
PkrI GCNGC 2 cut(s) 147, 612
PleI GAGTC 1 cut(s) 721
PpsI GAGTC 1 cut(s) 721
Psp124BI GAGCTC 1 cut(s) 701
Psp6I CCWGG 1 cut(s) 765
PspFI CCCAGC 2 cut(s) 280, 364
PspGI CCWGG 1 cut(s) 765
PspN4I GGNNCC 4 cut(s) 125, 131, 325, 563
PspPI GGNCC 1 cut(s) 469
PstNI CAGNNNCTG 1 cut(s) 314
PsuI RGATCY 2 cut(s) 116, 439
RsaI GTAC 1 cut(s) 168
RsaNI GTAC 1 cut(s) 167
RseI CAYNNNNRTG 2 cut(s) 254, 691
SacI GAGCTC 1 cut(s) 701
SaqAI TTAA 1 cut(s) 572
SatI GCNGC 2 cut(s) 146, 611
Sau3AI GATC 3 cut(s) 116, 439, 533
Sau96I GGNCC 1 cut(s) 469
SchI GAGTC 1 cut(s) 722
ScrFI CCNGG 2 cut(s) 121, 767
SduI GDGCHC 3 cut(s) 398, 599, 701
SfaNI GCATC 3 cut(s) 117, 249, 695
SinI GGWCC 1 cut(s) 469
SmiMI CAYNNNNRTG 2 cut(s) 254, 691
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
Sse9I AATT 3 cut(s) 574, 600, 706
SsiI CCGC 1 cut(s) 145
SspMI CTAG 2 cut(s) 518, 737
SstI GAGCTC 1 cut(s) 701
StyD4I CCNGG 2 cut(s) 119, 765
StyI CCWWGG 1 cut(s) 454
TaaI ACNGT 2 cut(s) 316, 774
TaqI TCGA 2 cut(s) 530, 716
TasI AATT 3 cut(s) 574, 600, 706
TauI GCSGC 1 cut(s) 148
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 1 cut(s) 572
Tru9I TTAA 1 cut(s) 572
TscAI CASTG 2 cut(s) 319, 341
TseI GCWGC 1 cut(s) 610
TspDTI ATGAA 5 cut(s) 42, 461, 635, 681, 734
TspRI CASTG 2 cut(s) 319, 341
VpaK11BI GGWCC 1 cut(s) 469
XapI RAATTY 2 cut(s) 574, 706
XceI RCATGY 1 cut(s) 671
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 2 cut(s) 518, 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.