Rorug04G0309600

UPF0420 protein C16orf58 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0005337
Physical Location & Seq
Reverse (-)
48512121 .. 48513038
918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0309600.1

Sequence Viewer

Length: 918 bp
ATGGATTGCAGTGCTATTGAACTGAAGGTTATCTCCTGTAAGGATCTCAAAGCCTTCAATTTCTTCCAGAAGCTTTCAGTCTATGCAGACGTCTCCATCTTCAATGATGAAATCAAGAAAGAGCAGCAACAGCAAGAACATCTGCTGCAGCGCCAGAAAACACCAGTCGACAGAGATGGAGATGGGAACCCGGAGTGGAATCATACGATGAGCTTCGATACGAAAGCCATGTCATCGCTCGATGATCAATGGGTTCACTGGTATATCAAGTTCGACATGCGCAATGATGGTGCAGTTTTGGGGAAGAGCCTTGGCAAAGTGCAGGTACCTTTGAAAGAGTTGATCGAGGAGTTCAATGGAGCAGTCAGGTTTATGAGCTATCAAGTCAAGACTGGTGATGGGAAGTCTAATGGGGTCTTAGATTTTTCTTACCATGTAATTGGGAAGAAGAGCACCAACAACAATGGAATTCCTGATTCCGTAGTATCCGAAAAAACCAATGTTCCTGATCCTGCTGGTAAAGTCCAGGTTCAATCTCTTTACCCCACTTTAGAAGTAGAATCCCTGTCCCGGGATCTGTTCTATCCTTCATTAGCTGAGGTTTCCAGTCCCGTACCAAAAATTCCAGTCCCTTCTCCAAAGCTTAGCACTCAATTTTCGCTTCCTTCTCATCATCATCATCATCATCATCATCCTCCATGTCAAGCATTCTCGCCATTTGTTCAACCTCCGAGGATGTACTGGCATCCATCAGAGTTCACAAATCATGGTTGCAATTTCTGTAGCAACCCTGCCGGGTTAGGACAAGTTGGGATGGTGGATTATAAGGGTCCATGGAGGACTAATTTTCCAGGGAATAGAAGTGATCTTCTTCAAGCTCCAGATCCGGAAACTACTACCAATGGCAGATGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF647

Protein Analysis

305

Amino Acids

34.37

Weight (kDa)

6.38

Isoelectric Point (pI)

36.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 6 - 115 1.1e-06 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 825
AatII GACGTC 1 cut(s) 93
Acc16I TGCGCA 1 cut(s) 281
Acc36I ACCTGC 1 cut(s) 313
Acc65I GGTACC 1 cut(s) 325
AccB1I GGYRCC 1 cut(s) 325
AccI GTMKAC 1 cut(s) 168
AccIII TCCGGA 1 cut(s) 886
AclWI GGATC 4 cut(s) 51, 503, 582, 878
AcsI RAATTY 2 cut(s) 468, 621
AcuI CTGAAG 1 cut(s) 44
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 3 cut(s) 327, 615, 740
AfiI CCNNNNNNNGG 2 cut(s) 570, 571
AgsI TTSAA 8 cut(s) 20, 58, 103, 334, 355, 533, 725, 875
AjnI CCWGG 2 cut(s) 525, 850
AluBI AGCT 6 cut(s) 73, 213, 378, 596, 643, 878
AluI AGCT 6 cut(s) 73, 213, 378, 596, 643, 878
Alw21I GWGCWC 1 cut(s) 455
Alw26I GTCTC 1 cut(s) 97
AlwI GGATC 4 cut(s) 51, 503, 582, 878
Ama87I CYCGRG 1 cut(s) 570
Aor13HI TCCGGA 1 cut(s) 886
ApeKI GCWGC 3 cut(s) 124, 145, 148
ApoI RAATTY 2 cut(s) 468, 621
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
Asp718I GGTACC 1 cut(s) 325
AspLEI GCGC 2 cut(s) 153, 282
AspS9I GGNCC 1 cut(s) 830
AsuC2I CCSGG 4 cut(s) 191, 571, 572, 796
AsuHPI GGTGA 1 cut(s) 407
AvaI CYCGRG 1 cut(s) 570
AvaII GGWCC 1 cut(s) 830
BanI GGYRCC 1 cut(s) 325
Bbv12I GWGCWC 1 cut(s) 455
BbvCI CCTCAGC 1 cut(s) 597
BbvI GCAGC 3 cut(s) 132, 136, 160
BccI CCATC 7 cut(s) 104, 170, 176, 281, 392, 757, 808
BciT130I CCWGG 2 cut(s) 527, 852
BciVI GTATCC 1 cut(s) 496
BclI TGATCA 1 cut(s) 244
BcnI CCSGG 4 cut(s) 191, 571, 572, 796
BcoDI GTCTC 1 cut(s) 97
BfmI CTRYAG 2 cut(s) 146, 781
BfoI RGCGCY 1 cut(s) 154
BfuAI ACCTGC 1 cut(s) 313
BfuI GTATCC 1 cut(s) 496
BisI GCNGC 3 cut(s) 125, 146, 149
BlpI GCTNAGC 1 cut(s) 644
BlsI GCNGC 3 cut(s) 126, 147, 150
Bme1390I CCNGG 6 cut(s) 191, 527, 571, 572, 796, 852
Bme18I GGWCC 1 cut(s) 830
BmeT110I CYCGRG 1 cut(s) 570
BmgT120I GGNCC 1 cut(s) 830
BmiI GGNNCC 3 cut(s) 188, 327, 831
BmrFI CCNGG 6 cut(s) 191, 527, 571, 572, 796, 852
BmsI GCATC 2 cut(s) 754, 899
BpmI CTGGAG 1 cut(s) 864
Bpu10I CCTNAGC 1 cut(s) 597
Bpu1102I GCTNAGC 1 cut(s) 644
BpuMI CCSGG 4 cut(s) 191, 571, 572, 796
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 5 cut(s) 310, 570, 731, 833, 851
BsaWI WCCGGW 1 cut(s) 886
Bsc4I CCNNNNNNNGG 2 cut(s) 570, 571
Bse1I ACTGG 6 cut(s) 164, 263, 397, 606, 626, 746
Bse3DI GCAATG 1 cut(s) 289
BseAI TCCGGA 1 cut(s) 886
BseBI CCWGG 2 cut(s) 527, 852
BseDI CCNNGG 5 cut(s) 310, 570, 731, 833, 851
BseGI GGATG 4 cut(s) 691, 741, 745, 819
BseLI CCNNNNNNNGG 2 cut(s) 570, 571
BseMI GCAATG 1 cut(s) 289
BseMII CTCAG 1 cut(s) 588
BseNI ACTGG 6 cut(s) 164, 263, 397, 606, 626, 746
BseRI GAGGAG 1 cut(s) 362
BseXI GCAGC 3 cut(s) 132, 136, 160
BsgI GTGCAG 2 cut(s) 312, 341
BshNI GGYRCC 1 cut(s) 325
BsiHKAI GWGCWC 1 cut(s) 455
BsiHKCI CYCGRG 1 cut(s) 570
BsiSI CCGG 4 cut(s) 191, 571, 795, 887
BslFI GGGAC 3 cut(s) 553, 594, 614
BslI CCNNNNNNNGG 2 cut(s) 570, 571
BsmAI GTCTC 1 cut(s) 97
BsmBI CGTCTC 1 cut(s) 97
BsmFI GGGAC 3 cut(s) 553, 594, 614
BsmI GAATGC 1 cut(s) 707
BsoBI CYCGRG 1 cut(s) 570
Bsp1286I GDGCHC 1 cut(s) 455
Bsp13I TCCGGA 1 cut(s) 886
Bsp143I GATC 7 cut(s) 43, 244, 342, 508, 574, 865, 883
Bsp1720I GCTNAGC 1 cut(s) 644
Bsp19I CCATGG 1 cut(s) 833
BspCNI CTCAG 1 cut(s) 589
BspEI TCCGGA 1 cut(s) 886
BspLI GGNNCC 3 cut(s) 188, 327, 831
BspMAI CTGCAG 1 cut(s) 150
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 4 cut(s) 51, 503, 582, 878
BspQI GCTCTTC 2 cut(s) 299, 443
BspT107I GGYRCC 1 cut(s) 325
BsrDI GCAATG 1 cut(s) 289
BsrI ACTGG 6 cut(s) 164, 263, 397, 606, 626, 746
BssECI CCNNGG 5 cut(s) 310, 570, 731, 833, 851
BssMI GATC 7 cut(s) 43, 244, 342, 508, 574, 865, 883
BssNI GRCGYC 1 cut(s) 90
BssT1I CCWWGG 2 cut(s) 310, 833
Bst2UI CCWGG 2 cut(s) 527, 852
Bst6I CTCTTC 2 cut(s) 299, 443
BstACI GRCGYC 1 cut(s) 90
BstDEI CTNAG 3 cut(s) 418, 597, 644
BstDSI CCRYGG 1 cut(s) 833
BstF5I GGATG 4 cut(s) 691, 741, 745, 819
BstH2I RGCGCY 1 cut(s) 154
BstHHI GCGC 2 cut(s) 153, 282
BstKTI GATC 7 cut(s) 46, 247, 345, 511, 577, 868, 886
BstMAI GTCTC 1 cut(s) 97
BstMBI GATC 7 cut(s) 43, 244, 342, 508, 574, 865, 883
BstMWI GCNNNNNNNGC 1 cut(s) 130
BstNI CCWGG 2 cut(s) 527, 852
BstNSI RCATGY 1 cut(s) 280
BstSCI CCNGG 6 cut(s) 189, 525, 569, 570, 794, 850
BstSFI CTRYAG 2 cut(s) 146, 781
BstV1I GCAGC 3 cut(s) 132, 136, 160
BstX2I RGATCY 3 cut(s) 43, 574, 883
BstXI CCANNNNNNTGG 1 cut(s) 440
BstYI RGATCY 3 cut(s) 43, 574, 883
BsuI GTATCC 1 cut(s) 496
BtgI CCRYGG 1 cut(s) 833
BtgZI GCGATG 1 cut(s) 219
BtsCI GGATG 4 cut(s) 691, 741, 745, 819
BtsI GCAGTG 1 cut(s) 16
BtsIMutI CAGTG 2 cut(s) 16, 256
BveI ACCTGC 1 cut(s) 313
CfoI GCGC 2 cut(s) 153, 282
Cfr13I GGNCC 1 cut(s) 830
Cfr9I CCCGGG 1 cut(s) 570
Csp6I GTAC 3 cut(s) 326, 614, 739
CviAII CATG 6 cut(s) 229, 277, 434, 699, 767, 834
CviJI RGCY 9 cut(s) 53, 73, 213, 227, 309, 378, 596, 643, 878
CviKI_1 RGCY 9 cut(s) 53, 73, 213, 227, 309, 378, 596, 643, 878
CviQI GTAC 3 cut(s) 326, 614, 739
DdeI CTNAG 3 cut(s) 418, 597, 644
DpnI GATC 7 cut(s) 45, 246, 344, 510, 576, 867, 885
DpnII GATC 7 cut(s) 43, 244, 342, 508, 574, 865, 883
Eam1104I CTCTTC 2 cut(s) 299, 443
EarI CTCTTC 2 cut(s) 299, 443
Eco130I CCWWGG 2 cut(s) 310, 833
Eco47I GGWCC 1 cut(s) 830
Eco57I CTGAAG 1 cut(s) 44
Eco88I CYCGRG 1 cut(s) 570
EcoRI GAATTC 1 cut(s) 468
EcoRII CCWGG 2 cut(s) 525, 850
EcoT14I CCWWGG 2 cut(s) 310, 833
ErhI CCWWGG 2 cut(s) 310, 833
Esp3I CGTCTC 1 cut(s) 97
FaeI CATG 6 cut(s) 232, 280, 437, 702, 770, 837
FaqI GGGAC 3 cut(s) 553, 594, 614
FatI CATG 6 cut(s) 228, 276, 433, 698, 766, 833
FbaI TGATCA 1 cut(s) 244
FblI GTMKAC 1 cut(s) 168
Fnu4HI GCNGC 3 cut(s) 125, 146, 149
FokI GGATG 4 cut(s) 678, 732, 748, 826
Fsp4HI GCNGC 3 cut(s) 125, 146, 149
FspI TGCGCA 1 cut(s) 281
GlaI GCGC 2 cut(s) 152, 281
GluI GCNGC 3 cut(s) 125, 146, 149
GsuI CTGGAG 1 cut(s) 864
HaeII RGCGCY 1 cut(s) 154
HapII CCGG 4 cut(s) 191, 571, 795, 887
HhaI GCGC 2 cut(s) 153, 282
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 6 cut(s) 232, 280, 437, 702, 770, 837
Hin6I GCGC 2 cut(s) 151, 280
HinP1I GCGC 2 cut(s) 151, 280
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HindIII AAGCTT 2 cut(s) 71, 641
HinfI GANTC 3 cut(s) 199, 476, 560
HpaII CCGG 4 cut(s) 191, 571, 795, 887
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 3 cut(s) 169, 256, 759
Hpy188I TCNGA 3 cut(s) 490, 732, 754
Hpy188III TCNNGA 7 cut(s) 67, 115, 388, 473, 506, 881, 887
Hpy8I GTNNAC 3 cut(s) 169, 256, 759
HpyAV CCTTC 5 cut(s) 19, 64, 597, 642, 675
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 6 cut(s) 9, 86, 148, 293, 322, 774
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
HpyF3I CTNAG 3 cut(s) 418, 597, 644
HpySE526I ACGT 1 cut(s) 90
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 6 cut(s) 232, 280, 437, 702, 770, 837
HspAI GCGC 2 cut(s) 151, 280
Kpn2I TCCGGA 1 cut(s) 886
KpnI GGTACC 1 cut(s) 329
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 7 cut(s) 43, 244, 342, 508, 574, 865, 883
LguI GCTCTTC 2 cut(s) 299, 443
LmnI GCTCC 2 cut(s) 359, 883
Lsp1109I GCAGC 3 cut(s) 132, 136, 160
LweI GCATC 2 cut(s) 754, 899
MaeII ACGT 1 cut(s) 90
MalI GATC 7 cut(s) 45, 246, 344, 510, 576, 867, 885
MboI GATC 7 cut(s) 43, 244, 342, 508, 574, 865, 883
MboII GAAGA 7 cut(s) 55, 91, 316, 457, 460, 860, 863
MflI RGATCY 3 cut(s) 43, 574, 883
MhlI GDGCHC 1 cut(s) 455
MluCI AATT 7 cut(s) 58, 438, 468, 621, 653, 775, 844
MnlI CCTC 6 cut(s) 340, 592, 705, 726, 738, 831
MroI TCCGGA 1 cut(s) 886
MspI CCGG 4 cut(s) 191, 571, 795, 887
MspR9I CCNGG 6 cut(s) 191, 527, 571, 572, 796, 852
Mva1269I GAATGC 1 cut(s) 707
MvaI CCWGG 2 cut(s) 527, 852
MwoI GCNNNNNNNGC 1 cut(s) 130
NciI CCSGG 4 cut(s) 191, 571, 572, 796
NcoI CCATGG 1 cut(s) 833
NdeII GATC 7 cut(s) 43, 244, 342, 508, 574, 865, 883
NlaIII CATG 6 cut(s) 232, 280, 437, 702, 770, 837
NlaIV GGNNCC 3 cut(s) 188, 327, 831
NsbI TGCGCA 1 cut(s) 281
NspI RCATGY 1 cut(s) 280
PciSI GCTCTTC 2 cut(s) 299, 443
PctI GAATGC 1 cut(s) 707
PfeI GAWTC 3 cut(s) 199, 476, 560
PkrI GCNGC 3 cut(s) 126, 147, 150
PsiI TTATAA 1 cut(s) 825
Psp6I CCWGG 2 cut(s) 525, 850
PspGI CCWGG 2 cut(s) 525, 850
PspN4I GGNNCC 3 cut(s) 188, 327, 831
PspPI GGNCC 1 cut(s) 830
PsrI GAACNNNNNNTAC 2 cut(s) 254, 286
PstI CTGCAG 1 cut(s) 150
PsuI RGATCY 3 cut(s) 43, 574, 883
RsaI GTAC 3 cut(s) 327, 615, 740
RsaNI GTAC 3 cut(s) 326, 614, 739
SalI GTCGAC 1 cut(s) 167
SapI GCTCTTC 2 cut(s) 299, 443
SatI GCNGC 3 cut(s) 125, 146, 149
Sau3AI GATC 7 cut(s) 43, 244, 342, 508, 574, 865, 883
Sau96I GGNCC 1 cut(s) 830
ScrFI CCNGG 6 cut(s) 191, 527, 571, 572, 796, 852
SduI GDGCHC 1 cut(s) 455
SfaNI GCATC 2 cut(s) 754, 899
SfcI CTRYAG 2 cut(s) 146, 781
SinI GGWCC 1 cut(s) 830
SmaI CCCGGG 1 cut(s) 572
Sse9I AATT 7 cut(s) 58, 438, 468, 621, 653, 775, 844
StyD4I CCNGG 6 cut(s) 189, 525, 569, 570, 794, 850
StyI CCWWGG 2 cut(s) 310, 833
TaiI ACGT 1 cut(s) 93
TaqI TCGA 5 cut(s) 168, 216, 240, 273, 345
TasI AATT 7 cut(s) 58, 438, 468, 621, 653, 775, 844
TatI WGTACW 1 cut(s) 738
TfiI GAWTC 3 cut(s) 199, 476, 560
TscAI CASTG 2 cut(s) 16, 263
TseI GCWGC 3 cut(s) 124, 145, 148
TspDTI ATGAA 2 cut(s) 123, 579
TspGWI ACGGA 1 cut(s) 469
TspMI CCCGGG 1 cut(s) 570
TspRI CASTG 2 cut(s) 16, 263
VpaK11BI GGWCC 1 cut(s) 830
XapI RAATTY 2 cut(s) 468, 621
XceI RCATGY 1 cut(s) 280
XmaI CCCGGG 1 cut(s) 570
XmiI GTMKAC 1 cut(s) 168
ZraI GACGTC 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.