Prupe.1G286700_v2.0.a1

UPF0420 protein C16orf58 homolog

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
28701090 .. 28705764
4675 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G286700.4

Sequence Viewer

Length: 1356 bp
ATGGAAGTATCATCATCAACATCGGAGGTTATAGTGGAAGAATGGAGTGGCTCATCTTCCACCAAACTCTCAAGAACTGCCACCATAACCGCGTTTCCTTCACTCTCTATCCAAAGATCCGGTAGCCGGTTCCACCATCTTTGGCGGCGAATTCTTGAAGCATTTGTACCCGAGGGCTTTCCCAGCAGTGTAACTCCGGATTACGTCTCTTTTCAAGTCTGGGATTTACTCCAGGGTCTTTCTACTTACATAAGGACCATGCTTTCTACACAAGCTCTACTGAGTGCTATTGGGGTCGGTGAGAAATCGGCTACAGTAATTGGTGCCACCTTTCAGAATGATGCAGTGGTTCTTGAGAGACCTAACTGGAATGCTGGGAGGTATCTTATTCACATTCTATCAGGGGTGCCTTTGGCTAGTGGTTCCGTGACCGAAGGCTCAAATCTGGATAGCAATGCCAAAATGTGGCGCTTAGTTGCAGACCTTATGAATGATCTTGGAATGTTGATGGACCTTGTTTCACCATTGTTTCCATCGGCTTTTGTGTTTGTTGTTTGTTTAGGAAGCATATCAAGATCATTCACTGGTGTTGCAAGTGGAGCTACTAGAGCTGCTTTGACACAACATTTTGCTCTTCAGAGTAATGCTGCAGATATATCTGCCAAGGAGGGAAGTCAAGAGACCGTGGCAACGATGGTTGGTATGGCGCTGGGTATGCTTCTTGCTCGCATTACTATGGGACACCCACTAGCTATTTGGTTTTCATTTTTGTCACTCACCATGTTCCATATGTATGCAAACTACATGGCTGTTCGGTGCCTTGCATTAAATTCTTTGAACCCTCAGAGGTGCTCAATTCTTTTGCAGCATTTTATGAGAACTGGCCAAGTTCTCTCCCCTGAGCAGGTCTCTAAGATGGAGCACATTTTACCTGTATGGGCATCTTCATGGAGCTCAAAGAAAACAGAGTTAATACACGTGAGAGTATCTTTAGGTGTCAGAGTATCCTCACTAAATCACCTGGAACTGAGGGACTTATTACATTTTGCGGGATCTCATTATAAGAAAGCCAAGTACTTGCTAATGGAGAGGAAAGGAAACATCTGCATTGTTATGCACAAAGATTCAACTGCCACAGATGTCTTGCAGTCATTTTTACATGCAAATGCTATGGCAAATCTTATAGATAAACACCGAATTCTACATTCTGAAAGCCAAACATGGATGGATAAACACTATGAAGAATTTATCCAGAAGTTAAAGGTATCGGGTTGGAAAACAGAACGTCTTTTATCACCTACAATCGTCTGGAAGGCAAATTGGATCTGTGGGTCTTCAGATGAGAAGATTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

452

Amino Acids

50.07

Weight (kDa)

8.72

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1062
Acc36I ACCTGC 1 cut(s) 895
AccB1I GGYRCC 3 cut(s) 323, 406, 816
AccB7I CCANNNNNTGG 1 cut(s) 465
AccII CGCG 1 cut(s) 92
AccIII TCCGGA 1 cut(s) 196
AciI CCGC 3 cut(s) 90, 145, 1049
AclWI GGATC 3 cut(s) 111, 1060, 1331
AcoI YGGCCR 1 cut(s) 883
AcsI RAATTY 4 cut(s) 150, 829, 1197, 1244
AcuI CTGAAG 2 cut(s) 620, 1320
AcvI CACGTG 1 cut(s) 979
AfaI GTAC 2 cut(s) 168, 1076
AfiI CCNNNNNNNGG 3 cut(s) 126, 465, 904
AflIII ACRYGT 1 cut(s) 976
AgsI TTSAA 4 cut(s) 158, 215, 838, 1128
AjnI CCWGG 2 cut(s) 231, 1020
AluBI AGCT 5 cut(s) 275, 602, 611, 752, 954
AluI AGCT 5 cut(s) 275, 602, 611, 752, 954
Alw21I GWGCWC 3 cut(s) 854, 924, 956
Alw26I GTCTC 4 cut(s) 211, 352, 674, 913
AlwI GGATC 3 cut(s) 111, 1060, 1331
Ama87I CYCGRG 1 cut(s) 170
Aor13HI TCCGGA 1 cut(s) 196
AoxI GGCC 1 cut(s) 883
ApeKI GCWGC 3 cut(s) 611, 647, 865
ApoI RAATTY 4 cut(s) 150, 829, 1197, 1244
AspLEI GCGC 2 cut(s) 471, 709
AspS9I GGNCC 2 cut(s) 255, 511
AsuHPI GGTGA 5 cut(s) 311, 513, 769, 1010, 1287
AvaI CYCGRG 1 cut(s) 170
AvaII GGWCC 2 cut(s) 255, 511
BalI TGGCCA 1 cut(s) 885
BanI GGYRCC 3 cut(s) 323, 406, 816
BanII GRGCYC 1 cut(s) 956
BarI GAAGNNNNNNTAC 2 cut(s) 150, 182
BbrPI CACGTG 1 cut(s) 979
BbsI GAAGAC 1 cut(s) 1326
Bbv12I GWGCWC 3 cut(s) 854, 924, 956
BbvI GCAGC 3 cut(s) 598, 634, 877
BccI CCATC 6 cut(s) 144, 502, 541, 688, 910, 1219
BciT130I CCWGG 2 cut(s) 233, 1022
BciVI GTATCC 1 cut(s) 1015
BcoDI GTCTC 4 cut(s) 211, 352, 674, 913
BfaI CTAG 4 cut(s) 417, 606, 749, 1354
BfmI CTRYAG 2 cut(s) 312, 648
BfoI RGCGCY 2 cut(s) 472, 710
BfuAI ACCTGC 1 cut(s) 895
BfuI GTATCC 1 cut(s) 1015
BisI GCNGC 4 cut(s) 146, 612, 648, 866
BlsI GCNGC 4 cut(s) 147, 613, 649, 867
BmcAI AGTACT 1 cut(s) 1076
Bme1390I CCNGG 2 cut(s) 233, 1022
Bme18I GGWCC 2 cut(s) 255, 511
BmeT110I CYCGRG 1 cut(s) 170
BmgT120I GGNCC 2 cut(s) 255, 511
BmiI GGNNCC 5 cut(s) 131, 325, 408, 424, 818
BmrFI CCNGG 2 cut(s) 233, 1022
BmsI GCATC 2 cut(s) 331, 950
BpiI GAAGAC 1 cut(s) 1326
BplI GAGNNNNNCTC 2 cut(s) 893, 925
BpmI CTGGAG 1 cut(s) 215
Bpu10I CCTNAGC 1 cut(s) 900
BpuEI CTTGAG 2 cut(s) 55, 374
BsaAI YACGTR 1 cut(s) 979
BsaI GGTCTC 3 cut(s) 352, 674, 913
BsaJI CCNNGG 4 cut(s) 171, 232, 663, 684
BsaWI WCCGGW 2 cut(s) 119, 196
Bsc4I CCNNNNNNNGG 3 cut(s) 126, 465, 904
Bse118I RCCGGY 1 cut(s) 126
Bse1I ACTGG 3 cut(s) 371, 589, 886
Bse3DI GCAATG 1 cut(s) 460
BseAI TCCGGA 1 cut(s) 196
BseBI CCWGG 2 cut(s) 233, 1022
BseDI CCNNGG 4 cut(s) 171, 232, 663, 684
BseGI GGATG 1 cut(s) 1230
BseLI CCNNNNNNNGG 3 cut(s) 126, 465, 904
BseMI GCAATG 1 cut(s) 460
BseMII CTCAG 4 cut(s) 272, 857, 891, 1019
BseNI ACTGG 3 cut(s) 371, 589, 886
BseXI GCAGC 3 cut(s) 598, 634, 877
BseYI CCCAGC 3 cut(s) 182, 374, 709
Bsh1236I CGCG 1 cut(s) 92
BshFI GGCC 1 cut(s) 885
BshNI GGYRCC 3 cut(s) 323, 406, 816
BsiHKAI GWGCWC 3 cut(s) 854, 924, 956
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 3 cut(s) 120, 127, 197
BslFI GGGAC 2 cut(s) 753, 1046
BslI CCNNNNNNNGG 3 cut(s) 126, 465, 904
BsmAI GTCTC 4 cut(s) 211, 352, 674, 913
BsmBI CGTCTC 1 cut(s) 211
BsmFI GGGAC 2 cut(s) 753, 1046
BsmI GAATGC 1 cut(s) 376
BsnI GGCC 1 cut(s) 885
Bso31I GGTCTC 3 cut(s) 352, 674, 913
BsoBI CYCGRG 1 cut(s) 170
Bsp1286I GDGCHC 3 cut(s) 854, 924, 956
Bsp13I TCCGGA 1 cut(s) 196
Bsp143I GATC 5 cut(s) 116, 493, 575, 1052, 1323
BspACI CCGC 3 cut(s) 90, 145, 1049
BspANI GGCC 1 cut(s) 885
BspCNI CTCAG 4 cut(s) 273, 856, 892, 1020
BspEI TCCGGA 1 cut(s) 196
BspFNI CGCG 1 cut(s) 92
BspLI GGNNCC 5 cut(s) 131, 325, 408, 424, 818
BspMAI CTGCAG 1 cut(s) 652
BspMI ACCTGC 1 cut(s) 895
BspPI GGATC 3 cut(s) 111, 1060, 1331
BspQI GCTCTTC 1 cut(s) 639
BspT107I GGYRCC 3 cut(s) 323, 406, 816
BspTNI GGTCTC 3 cut(s) 352, 674, 913
BsrDI GCAATG 1 cut(s) 460
BsrFI RCCGGY 1 cut(s) 126
BsrI ACTGG 3 cut(s) 371, 589, 886
BssAI RCCGGY 1 cut(s) 126
BssECI CCNNGG 4 cut(s) 171, 232, 663, 684
BssMI GATC 5 cut(s) 116, 493, 575, 1052, 1323
BssT1I CCWWGG 1 cut(s) 663
Bst2UI CCWGG 2 cut(s) 233, 1022
Bst4CI ACNGT 2 cut(s) 316, 685
Bst6I CTCTTC 1 cut(s) 639
BstBAI YACGTR 1 cut(s) 979
BstC8I GCNNGC 1 cut(s) 727
BstDEI CTNAG 6 cut(s) 281, 472, 843, 900, 912, 1028
BstDSI CCRYGG 1 cut(s) 684
BstF5I GGATG 1 cut(s) 1230
BstFNI CGCG 1 cut(s) 92
BstH2I RGCGCY 2 cut(s) 472, 710
BstHHI GCGC 2 cut(s) 471, 709
BstKTI GATC 5 cut(s) 119, 496, 578, 1055, 1326
BstMAI GTCTC 4 cut(s) 211, 352, 674, 913
BstMBI GATC 5 cut(s) 116, 493, 575, 1052, 1323
BstMWI GCNNNNNNNGC 4 cut(s) 183, 599, 608, 715
BstNI CCWGG 2 cut(s) 233, 1022
BstNSI RCATGY 1 cut(s) 1163
BstSCI CCNGG 2 cut(s) 231, 1020
BstSFI CTRYAG 2 cut(s) 312, 648
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 3 cut(s) 598, 634, 877
BstV2I GAAGAC 1 cut(s) 1326
BstX2I RGATCY 3 cut(s) 116, 1052, 1323
BstYI RGATCY 3 cut(s) 116, 1052, 1323
BsuI GTATCC 1 cut(s) 1015
BsuRI GGCC 1 cut(s) 885
BtgI CCRYGG 1 cut(s) 684
BtsCI GGATG 1 cut(s) 1230
BtsI GCAGTG 2 cut(s) 193, 351
BtsIMutI CAGTG 3 cut(s) 193, 351, 582
BveI ACCTGC 1 cut(s) 895
Cac8I GCNNGC 1 cut(s) 727
CfoI GCGC 2 cut(s) 471, 709
Cfr10I RCCGGY 1 cut(s) 126
Cfr13I GGNCC 2 cut(s) 255, 511
Csp6I GTAC 2 cut(s) 167, 1075
CspCI CAANNNNNGTGG 2 cut(s) 122, 157
CviAII CATG 6 cut(s) 259, 781, 805, 948, 1160, 1221
CviQI GTAC 2 cut(s) 167, 1075
DdeI CTNAG 6 cut(s) 281, 472, 843, 900, 912, 1028
DpnI GATC 5 cut(s) 118, 495, 577, 1054, 1325
DpnII GATC 5 cut(s) 116, 493, 575, 1052, 1323
EaeI YGGCCR 1 cut(s) 883
Eam1104I CTCTTC 1 cut(s) 639
EarI CTCTTC 1 cut(s) 639
Ecl136II GAGCTC 1 cut(s) 954
Eco130I CCWWGG 1 cut(s) 663
Eco24I GRGCYC 1 cut(s) 956
Eco31I GGTCTC 3 cut(s) 352, 674, 913
Eco47I GGWCC 2 cut(s) 255, 511
Eco53kI GAGCTC 1 cut(s) 954
Eco57I CTGAAG 2 cut(s) 620, 1320
Eco72I CACGTG 1 cut(s) 979
Eco88I CYCGRG 1 cut(s) 170
EcoICRI GAGCTC 1 cut(s) 954
EcoRI GAATTC 2 cut(s) 150, 1197
EcoRII CCWGG 2 cut(s) 231, 1020
EcoT14I CCWWGG 1 cut(s) 663
EcoT38I GRGCYC 1 cut(s) 956
ErhI CCWWGG 1 cut(s) 663
Esp3I CGTCTC 1 cut(s) 211
FaeI CATG 6 cut(s) 262, 784, 808, 951, 1163, 1224
FaqI GGGAC 2 cut(s) 753, 1046
FatI CATG 6 cut(s) 258, 780, 804, 947, 1159, 1220
FauI CCCGC 1 cut(s) 1042
FauNDI CATATG 1 cut(s) 789
Fnu4HI GCNGC 4 cut(s) 146, 612, 648, 866
FokI GGATG 1 cut(s) 1237
FriOI GRGCYC 1 cut(s) 956
Fsp4HI GCNGC 4 cut(s) 146, 612, 648, 866
FspBI CTAG 4 cut(s) 417, 606, 749, 1354
GlaI GCGC 2 cut(s) 470, 708
GluI GCNGC 4 cut(s) 146, 612, 648, 866
GsaI CCCAGC 3 cut(s) 186, 378, 713
GsuI CTGGAG 1 cut(s) 215
HaeII RGCGCY 2 cut(s) 472, 710
HaeIII GGCC 1 cut(s) 885
HapII CCGG 3 cut(s) 120, 127, 197
HhaI GCGC 2 cut(s) 471, 709
Hin1II CATG 6 cut(s) 262, 784, 808, 951, 1163, 1224
Hin6I GCGC 2 cut(s) 469, 707
HinP1I GCGC 2 cut(s) 469, 707
HinfI GANTC 1 cut(s) 1124
HpaII CCGG 3 cut(s) 120, 127, 197
HphI GGTGA 5 cut(s) 311, 513, 769, 1010, 1287
Hpy188I TCNGA 7 cut(s) 25, 336, 639, 846, 1001, 1210, 1339
Hpy188III TCNNGA 9 cut(s) 72, 155, 197, 353, 446, 573, 677, 1252, 1309
HpyAV CCTTC 3 cut(s) 108, 428, 1306
HpyCH4III ACNGT 2 cut(s) 316, 685
HpyCH4IV ACGT 3 cut(s) 204, 978, 1285
HpyF10VI GCNNNNNNNGC 4 cut(s) 183, 599, 608, 715
HpyF3I CTNAG 6 cut(s) 281, 472, 843, 900, 912, 1028
HpySE526I ACGT 3 cut(s) 204, 978, 1285
Hsp92II CATG 6 cut(s) 262, 784, 808, 951, 1163, 1224
HspAI GCGC 2 cut(s) 469, 707
Kpn2I TCCGGA 1 cut(s) 196
Kzo9I GATC 5 cut(s) 116, 493, 575, 1052, 1323
LguI GCTCTTC 1 cut(s) 639
LmnI GCTCC 3 cut(s) 599, 919, 951
Lsp1109I GCAGC 3 cut(s) 598, 634, 877
LweI GCATC 2 cut(s) 331, 950
MaeI CTAG 4 cut(s) 417, 606, 749, 1354
MaeII ACGT 3 cut(s) 204, 978, 1285
MaeIII GTNAC 3 cut(s) 190, 427, 771
MalI GATC 5 cut(s) 118, 495, 577, 1054, 1325
MboI GATC 5 cut(s) 116, 493, 575, 1052, 1323
MboII GAAGA 6 cut(s) 48, 50, 626, 936, 1253, 1326
MflI RGATCY 3 cut(s) 116, 1052, 1323
MhlI GDGCHC 3 cut(s) 854, 924, 956
MlsI TGGCCA 1 cut(s) 885
MluCI AATT 7 cut(s) 150, 318, 829, 855, 1197, 1244, 1318
MluNI TGGCCA 1 cut(s) 885
MmeI TCCRAC 1 cut(s) 1253
MnlI CCTC 9 cut(s) 19, 166, 372, 661, 840, 852, 1018, 1023, 1083
Mox20I TGGCCA 1 cut(s) 885
MroI TCCGGA 1 cut(s) 196
MscI TGGCCA 1 cut(s) 885
MseI TTAA 3 cut(s) 827, 971, 1259
MslI CAYNNNNRTG 5 cut(s) 734, 792, 946, 1112, 1164
Msp20I TGGCCA 1 cut(s) 885
MspI CCGG 3 cut(s) 120, 127, 197
MspR9I CCNGG 2 cut(s) 233, 1022
Mva1269I GAATGC 1 cut(s) 376
MvaI CCWGG 2 cut(s) 233, 1022
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 4 cut(s) 183, 599, 608, 715
NdeI CATATG 1 cut(s) 789
NdeII GATC 5 cut(s) 116, 493, 575, 1052, 1323
NlaIII CATG 6 cut(s) 262, 784, 808, 951, 1163, 1224
NlaIV GGNNCC 5 cut(s) 131, 325, 408, 424, 818
NmuCI GTSAC 2 cut(s) 427, 771
NspI RCATGY 1 cut(s) 1163
PciSI GCTCTTC 1 cut(s) 639
PctI GAATGC 1 cut(s) 376
PfeI GAWTC 1 cut(s) 1124
PflMI CCANNNNNTGG 1 cut(s) 465
PkrI GCNGC 4 cut(s) 147, 613, 649, 867
PmaCI CACGTG 1 cut(s) 979
PmlI CACGTG 1 cut(s) 979
Ppu21I YACGTR 1 cut(s) 979
PsiI TTATAA 1 cut(s) 1062
Psp124BI GAGCTC 1 cut(s) 956
Psp6I CCWGG 2 cut(s) 231, 1020
PspCI CACGTG 1 cut(s) 979
PspFI CCCAGC 3 cut(s) 182, 374, 709
PspGI CCWGG 2 cut(s) 231, 1020
PspN4I GGNNCC 5 cut(s) 131, 325, 408, 424, 818
PspPI GGNCC 2 cut(s) 255, 511
PstI CTGCAG 1 cut(s) 652
PsuI RGATCY 3 cut(s) 116, 1052, 1323
RsaI GTAC 2 cut(s) 168, 1076
RsaNI GTAC 2 cut(s) 167, 1075
RseI CAYNNNNRTG 5 cut(s) 734, 792, 946, 1112, 1164
SacI GAGCTC 1 cut(s) 956
SapI GCTCTTC 1 cut(s) 639
SaqAI TTAA 3 cut(s) 827, 971, 1259
SatI GCNGC 4 cut(s) 146, 612, 648, 866
Sau3AI GATC 5 cut(s) 116, 493, 575, 1052, 1323
Sau96I GGNCC 2 cut(s) 255, 511
ScaI AGTACT 1 cut(s) 1076
ScrFI CCNGG 2 cut(s) 233, 1022
SduI GDGCHC 3 cut(s) 854, 924, 956
SfaNI GCATC 2 cut(s) 331, 950
SfcI CTRYAG 2 cut(s) 312, 648
SinI GGWCC 2 cut(s) 255, 511
SmiMI CAYNNNNRTG 5 cut(s) 734, 792, 946, 1112, 1164
SmlI CTYRAG 2 cut(s) 70, 353
SmoI CTYRAG 2 cut(s) 70, 353
Sse9I AATT 7 cut(s) 150, 318, 829, 855, 1197, 1244, 1318
SsiI CCGC 3 cut(s) 90, 145, 1049
SspMI CTAG 4 cut(s) 417, 606, 749, 1354
SstI GAGCTC 1 cut(s) 956
StyD4I CCNGG 2 cut(s) 231, 1020
StyI CCWWGG 1 cut(s) 663
TaaI ACNGT 2 cut(s) 316, 685
TaiI ACGT 3 cut(s) 207, 981, 1288
TaqII GACCGA 1 cut(s) 446
TasI AATT 7 cut(s) 150, 318, 829, 855, 1197, 1244, 1318
TatI WGTACW 1 cut(s) 1074
TauI GCSGC 1 cut(s) 148
TfiI GAWTC 1 cut(s) 1124
Tru1I TTAA 3 cut(s) 827, 971, 1259
Tru9I TTAA 3 cut(s) 827, 971, 1259
TscAI CASTG 3 cut(s) 193, 351, 589
TseFI GTSAC 2 cut(s) 427, 771
TseI GCWGC 3 cut(s) 611, 647, 865
Tsp45I GTSAC 2 cut(s) 427, 771
TspDTI ATGAA 4 cut(s) 503, 753, 936, 1254
TspGWI ACGGA 1 cut(s) 415
TspRI CASTG 3 cut(s) 193, 351, 589
Van91I CCANNNNNTGG 1 cut(s) 465
VpaK11BI GGWCC 2 cut(s) 255, 511
XapI RAATTY 4 cut(s) 150, 829, 1197, 1244
XceI RCATGY 1 cut(s) 1163
XcmI CCANNNNNNNNNTGG 1 cut(s) 753
XspI CTAG 4 cut(s) 417, 606, 749, 1354
ZrmI AGTACT 1 cut(s) 1076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.