Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00751

Orthogroup ID

OG0005337

Physical Location & Seq

Genomic Coordinates Forward (+)

325128 .. 329062

Gene Structure 3935 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G016450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGAGGTATCGTCGGCAATATCGGAGATTATATTGGAAGAATGGAATGGTTCATCTTCAACCAAACTCTCCAGAACTGCCACTATAACTTCGTCTCCTTCACTCTGCATCCAAAGATCCGGGAACCGGTTCCACCACGTTTGGCGGCGAGTTCTTCAAGCATTTGTACCTGAGGGCTTTCCCAGTAGTGTTACTCCAGATTATGTCCCTTTTCAAATGTGGGATTCACTTCAGGGTCTTTCTACTTACATAAGGATGATGCTTTCTACCCAAGCTCTGCTGGGTGCTATTGGGGTCGGTGAGAAATCAGCCACTGTGATTGGTGCCACCTTTCAGTGGTTCTTGAGGGACTTGACTGGAATGCTGGGAGGTATCTTATTCACATTTTATCAGGGCTCAAATCTGGATAGCAATGCTAAAATGTGGCGCTTAGTTGCAGATCTTATGAATGACCTTGGAATGTTGATGGACCTTGTTTCGCCTTTGTTTCCATCTGCTTTTGTGTTTGTGGTCTGTCTAGGAAGCCTATCGAGATCATTCACCGGTGTTGCAAGTGGAGCAACTAGAGCTGCTTTGACACAACATTTTGCTCTTCAGAATAACGCTGCAGATATATCTGCCAAGGAAGGAAGTCAAGAAACAATGGCAACAATGATTGGTATGGCACTGGGCATGCTTCTTGCTCGTGTAACTATGGAGCACCCACTAGCTATTTGGTTTTCTTTTTTGTCTCTCACCGTGTTCCATATGTATGCAAACTACAAGGCTGTCCGGTGCCTTGCATTAAATTCTTTGAACCCTCAGAGGTGCTCAATTCTTTTGCAGCATTTTATGAAAACCGGCAAAGTTCTCTCACCTGAACAGGTATCTAAGATGGAGCATGTTTTACCCATATGGGCATCTTCATGGAGCTCAAAGAATTCAGAGTCGATATCTCTAGGTGTCAGGGTCTCCTCACTAAATCACCTGGAACTGAGGGAGTTATTGCATTCTGCGGGCTCTCATTACAAGAAAGCCAAGTACTTGCTGGTGGAAAGGAAAGGAATTGTCTGCATTGTTATGCACAAAGATTCTGCTGCCACAGATGTCTTGCAGTCATTTTTTCATGCAAATGCAATGGCAAATCTAATGGATAAACACCGAAGTCTTCATTCTGAAAGCCAATCATGGATGGATAAACATTATGAAGCTTTCATTCAAAAGTTAAAGGTGTCTGGTTGGAAAACAGAACGTCTTTTATCACCAACGATCATTTGGAAGGCAAACTGGATCTGTGGGTCTTCTGATGGCAAGATTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF647

Protein Analysis

433

Amino Acids

48.13

Weight (kDa)

9.04

Isoelectric Point (pI)

45.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UVB_sens_prot	PF04884	44 - 280	6.9e-93	Vitamin B6 photo-protection and homoeostasis domain
UVB_sens_C	PF24160	282 - 423	9.2e-13	Root UVB sensitive protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13770 AT1G13770 AT1G13770 AT1G13770
fragaria_vesca	FvH4_4g30090 FvH4_4g30090 FvH4_4g30090 FvH4_4g30090 FvH4_4g30090
malus_domestica	MD16G1061400.v1.1
prunus_persica	Prupe.1G286700_v2.0.a1 Prupe.1G286700_v2.0.a1 Prupe.1G286700_v2.0.a1 Prupe.1G286700_v2.0.a1 Prupe.1G286700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0438371 RchiOBHm_Chr4g0438391
rosa_multiflora	Rmu_sc0002327.1_g000026
rosa_roxburghii	Rroxscaffold_5G00379420
rosa_rugosa	Rorug04G0309300 Rorug04G0309400 Rorug04G0309500 Rorug04G0309600
rosa_samantha	Rh4AG360400 Rh4BG371300 Rh4CG385300 Rh4DG366200
rosa_wichuraiana	Rw0G006500 Rw0G016450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	323, 774
AciI	CCGC	2 cut(s)	145, 995
AclWI	GGATC	2 cut(s)	111, 1277
AcsI	RAATTY	2 cut(s)	787, 919
AcuI	CTGAAG	2 cut(s)	215, 578
AfaI	GTAC	2 cut(s)	168, 1022
AfiI	CCNNNNNNNGG	2 cut(s)	126, 336
AgeI	ACCGGT	2 cut(s)	126, 542
AgsI	TTSAA	5 cut(s)	60, 158, 215, 796, 1199
AjnI	CCWGG	1 cut(s)	966
AluBI	AGCT	5 cut(s)	275, 569, 710, 912, 1190
AluI	AGCT	5 cut(s)	275, 569, 710, 912, 1190
Alw21I	GWGCWC	3 cut(s)	702, 812, 914
Alw26I	GTCTC	3 cut(s)	99, 735, 955
AlwI	GGATC	2 cut(s)	111, 1277
AlwNI	CAGNNNCTG	1 cut(s)	314
ApeKI	GCWGC	4 cut(s)	569, 605, 823, 1076
ApoI	RAATTY	2 cut(s)	787, 919
AsiGI	ACCGGT	2 cut(s)	126, 542
Asp700I	GAANNNNTTC	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	1 cut(s)	469
AsuC2I	CCSGG	1 cut(s)	121
AsuHPI	GGTGA	6 cut(s)	311, 532, 727, 846, 956, 1233
AvaII	GGWCC	1 cut(s)	469
AxyI	CCTNAGG	1 cut(s)	171
BanI	GGYRCC	2 cut(s)	323, 774
BanII	GRGCYC	3 cut(s)	398, 914, 1001
BauI	CACGAG	1 cut(s)	684
BbsI	GAAGAC	2 cut(s)	1139, 1272
Bbv12I	GWGCWC	3 cut(s)	702, 812, 914
BbvI	GCAGC	4 cut(s)	556, 592, 835, 1063
BccI	CCATC	5 cut(s)	460, 499, 868, 1165, 1280
BciT130I	CCWGG	1 cut(s)	968
BcnI	CCSGG	1 cut(s)	121
BcoDI	GTCTC	3 cut(s)	99, 735, 955
BfaI	CTAG	5 cut(s)	518, 564, 707, 938, 1300
BfmI	CTRYAG	1 cut(s)	606
BfoI	RGCGCY	1 cut(s)	430
BglII	AGATCT	1 cut(s)	439
BisI	GCNGC	5 cut(s)	146, 570, 606, 824, 1077
BlsI	GCNGC	5 cut(s)	147, 571, 607, 825, 1078
BmcAI	AGTACT	1 cut(s)	1022
Bme1390I	CCNGG	2 cut(s)	121, 968
Bme18I	GGWCC	1 cut(s)	469
BmgT120I	GGNCC	1 cut(s)	469
BmiI	GGNNCC	4 cut(s)	125, 131, 325, 776
BmrFI	CCNGG	2 cut(s)	121, 968
BmrI	ACTGGG	2 cut(s)	177, 677
BmsI	GCATC	3 cut(s)	117, 249, 908
BmuI	ACTGGG	2 cut(s)	177, 677
BpiI	GAAGAC	2 cut(s)	1139, 1272
BpmI	CTGGAG	2 cut(s)	55, 180
BpuEI	CTTGAG	1 cut(s)	364
BpuMI	CCSGG	1 cut(s)	121
BsaI	GGTCTC	1 cut(s)	955
BsaJI	CCNNGG	2 cut(s)	454, 621
BsaWI	WCCGGW	3 cut(s)	126, 542, 771
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 79, 109
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 336
Bse118I	RCCGGY	3 cut(s)	126, 542, 839
Bse1I	ACTGG	4 cut(s)	183, 361, 672, 1271
Bse21I	CCTNAGG	1 cut(s)	171
Bse3DI	GCAATG	2 cut(s)	418, 1122
BseBI	CCWGG	1 cut(s)	968
BseDI	CCNNGG	2 cut(s)	454, 621
BseGI	GGATG	3 cut(s)	108, 261, 1176
BseLI	CCNNNNNNNGG	2 cut(s)	126, 336
BseMI	GCAATG	2 cut(s)	418, 1122
BseMII	CTCAG	3 cut(s)	162, 815, 965
BseNI	ACTGG	4 cut(s)	183, 361, 672, 1271
BseRI	GAGGAG	1 cut(s)	943
BseXI	GCAGC	4 cut(s)	556, 592, 835, 1063
BseYI	CCCAGC	2 cut(s)	280, 364
BshNI	GGYRCC	2 cut(s)	323, 774
BshTI	ACCGGT	2 cut(s)	126, 542
BsiHKAI	GWGCWC	3 cut(s)	702, 812, 914
BsiSI	CCGG	5 cut(s)	120, 127, 543, 772, 840
BslFI	GGGAC	2 cut(s)	191, 362
BslI	CCNNNNNNNGG	2 cut(s)	126, 336
BsmAI	GTCTC	3 cut(s)	99, 735, 955
BsmBI	CGTCTC	1 cut(s)	99
BsmFI	GGGAC	2 cut(s)	191, 362
BsmI	GAATGC	2 cut(s)	366, 988
Bso31I	GGTCTC	1 cut(s)	955
Bsp1286I	GDGCHC	5 cut(s)	398, 702, 812, 914, 1001
Bsp143I	GATC	5 cut(s)	116, 439, 533, 1248, 1269
BspACI	CCGC	2 cut(s)	145, 995
BspCNI	CTCAG	3 cut(s)	163, 814, 966
BspLI	GGNNCC	4 cut(s)	125, 131, 325, 776
BspMAI	CTGCAG	1 cut(s)	610
BspPI	GGATC	2 cut(s)	111, 1277
BspQI	GCTCTTC	1 cut(s)	597
BspT107I	GGYRCC	2 cut(s)	323, 774
BspTNI	GGTCTC	1 cut(s)	955
BsrDI	GCAATG	2 cut(s)	418, 1122
BsrFI	RCCGGY	3 cut(s)	126, 542, 839
BsrI	ACTGG	4 cut(s)	183, 361, 672, 1271
BssAI	RCCGGY	3 cut(s)	126, 542, 839
BssECI	CCNNGG	2 cut(s)	454, 621
BssMI	GATC	5 cut(s)	116, 439, 533, 1248, 1269
BssSI	CACGAG	1 cut(s)	684
BssT1I	CCWWGG	2 cut(s)	454, 621
Bst2BI	CACGAG	1 cut(s)	684
Bst2UI	CCWGG	1 cut(s)	968
Bst4CI	ACNGT	2 cut(s)	316, 739
Bst6I	CTCTTC	1 cut(s)	597
BstC8I	GCNNGC	2 cut(s)	674, 997
BstDEI	CTNAG	5 cut(s)	171, 430, 801, 870, 974
BstF5I	GGATG	3 cut(s)	108, 261, 1176
BstH2I	RGCGCY	1 cut(s)	430
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	5 cut(s)	119, 442, 536, 1251, 1272
BstMAI	GTCTC	3 cut(s)	99, 735, 955
BstMBI	GATC	5 cut(s)	116, 439, 533, 1248, 1269
BstMWI	GCNNNNNNNGC	2 cut(s)	557, 566
BstNI	CCWGG	1 cut(s)	968
BstNSI	RCATGY	2 cut(s)	676, 884
BstSCI	CCNGG	2 cut(s)	119, 966
BstSFI	CTRYAG	1 cut(s)	606
BstV1I	GCAGC	4 cut(s)	556, 592, 835, 1063
BstV2I	GAAGAC	2 cut(s)	1139, 1272
BstX2I	RGATCY	3 cut(s)	116, 439, 1269
BstYI	RGATCY	3 cut(s)	116, 439, 1269
Bsu36I	CCTNAGG	1 cut(s)	171
BtsCI	GGATG	3 cut(s)	108, 261, 1176
BtsIMutI	CAGTG	3 cut(s)	312, 341, 665
Cac8I	GCNNGC	2 cut(s)	674, 997
CaiI	CAGNNNCTG	1 cut(s)	314
CfoI	GCGC	1 cut(s)	429
Cfr10I	RCCGGY	3 cut(s)	126, 542, 839
Cfr13I	GGNCC	1 cut(s)	469
Csp6I	GTAC	2 cut(s)	167, 1021
CspAI	ACCGGT	2 cut(s)	126, 542
CspCI	CAANNNNNGTGG	4 cut(s)	122, 157, 301, 336
CviAII	CATG	5 cut(s)	673, 881, 906, 1106, 1167
CviQI	GTAC	2 cut(s)	167, 1021
DdeI	CTNAG	5 cut(s)	171, 430, 801, 870, 974
DpnI	GATC	5 cut(s)	118, 441, 535, 1250, 1271
DpnII	GATC	5 cut(s)	116, 439, 533, 1248, 1269
Eam1104I	CTCTTC	1 cut(s)	597
EarI	CTCTTC	1 cut(s)	597
Ecl136II	GAGCTC	1 cut(s)	912
Eco130I	CCWWGG	2 cut(s)	454, 621
Eco24I	GRGCYC	3 cut(s)	398, 914, 1001
Eco31I	GGTCTC	1 cut(s)	955
Eco32I	GATATC	1 cut(s)	933
Eco47I	GGWCC	1 cut(s)	469
Eco53kI	GAGCTC	1 cut(s)	912
Eco57I	CTGAAG	2 cut(s)	215, 578
Eco81I	CCTNAGG	1 cut(s)	171
EcoICRI	GAGCTC	1 cut(s)	912
EcoRI	GAATTC	1 cut(s)	919
EcoRII	CCWGG	1 cut(s)	966
EcoRV	GATATC	1 cut(s)	933
EcoT14I	CCWWGG	2 cut(s)	454, 621
EcoT38I	GRGCYC	3 cut(s)	398, 914, 1001
ErhI	CCWWGG	2 cut(s)	454, 621
Esp3I	CGTCTC	1 cut(s)	99
FaeI	CATG	5 cut(s)	676, 884, 909, 1109, 1170
FaqI	GGGAC	2 cut(s)	191, 362
FatI	CATG	5 cut(s)	672, 880, 905, 1105, 1166
FauI	CCCGC	1 cut(s)	988
FauNDI	CATATG	2 cut(s)	747, 893
Fnu4HI	GCNGC	5 cut(s)	146, 570, 606, 824, 1077
FokI	GGATG	3 cut(s)	95, 268, 1183
FriOI	GRGCYC	3 cut(s)	398, 914, 1001
Fsp4HI	GCNGC	5 cut(s)	146, 570, 606, 824, 1077
FspBI	CTAG	5 cut(s)	518, 564, 707, 938, 1300
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	5 cut(s)	146, 570, 606, 824, 1077
GsaI	CCCAGC	2 cut(s)	284, 368
GsuI	CTGGAG	2 cut(s)	55, 180
HaeII	RGCGCY	1 cut(s)	430
HapII	CCGG	5 cut(s)	120, 127, 543, 772, 840
HhaI	GCGC	1 cut(s)	429
Hin1II	CATG	5 cut(s)	676, 884, 909, 1109, 1170
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HindIII	AAGCTT	1 cut(s)	1188
HinfI	GANTC	3 cut(s)	224, 926, 1070
HpaII	CCGG	5 cut(s)	120, 127, 543, 772, 840
HphI	GGTGA	6 cut(s)	311, 532, 727, 846, 956, 1233
Hpy188I	TCNGA	6 cut(s)	25, 597, 804, 925, 1156, 1285
Hpy188III	TCNNGA	6 cut(s)	72, 197, 343, 404, 531, 635
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	3 cut(s)	108, 620, 1252
HpyCH4III	ACNGT	2 cut(s)	316, 739
HpyCH4IV	ACGT	2 cut(s)	138, 1231
HpyF10VI	GCNNNNNNNGC	2 cut(s)	557, 566
HpyF3I	CTNAG	5 cut(s)	171, 430, 801, 870, 974
HpySE526I	ACGT	2 cut(s)	138, 1231
Hsp92II	CATG	5 cut(s)	676, 884, 909, 1109, 1170
HspAI	GCGC	1 cut(s)	427
Kzo9I	GATC	5 cut(s)	116, 439, 533, 1248, 1269
LguI	GCTCTTC	1 cut(s)	597
LmnI	GCTCC	4 cut(s)	557, 697, 877, 909
Lsp1109I	GCAGC	4 cut(s)	556, 592, 835, 1063
LweI	GCATC	3 cut(s)	117, 249, 908
MaeI	CTAG	5 cut(s)	518, 564, 707, 938, 1300
MaeII	ACGT	2 cut(s)	138, 1231
MaeIII	GTNAC	2 cut(s)	190, 688
MalI	GATC	5 cut(s)	118, 441, 535, 1250, 1271
MboI	GATC	5 cut(s)	116, 439, 533, 1248, 1269
MboII	GAAGA	7 cut(s)	48, 50, 146, 584, 894, 1139, 1272
MflI	RGATCY	3 cut(s)	116, 439, 1269
MhlI	GDGCHC	5 cut(s)	398, 702, 812, 914, 1001
MluCI	AATT	4 cut(s)	787, 813, 919, 1044
MlyI	GAGTC	1 cut(s)	935
MmeI	TCCRAC	1 cut(s)	1199
MnlI	CCTC	7 cut(s)	166, 339, 362, 798, 810, 964, 969
MroXI	GAANNNNTTC	1 cut(s)	128
MseI	TTAA	2 cut(s)	785, 1205
MslI	CAYNNNNRTG	5 cut(s)	254, 750, 904, 1058, 1110
MspI	CCGG	5 cut(s)	120, 127, 543, 772, 840
MspR9I	CCNGG	2 cut(s)	121, 968
Mva1269I	GAATGC	2 cut(s)	366, 988
MvaI	CCWGG	1 cut(s)	968
MwoI	GCNNNNNNNGC	2 cut(s)	557, 566
NciI	CCSGG	1 cut(s)	121
NdeI	CATATG	2 cut(s)	747, 893
NdeII	GATC	5 cut(s)	116, 439, 533, 1248, 1269
NlaIII	CATG	5 cut(s)	676, 884, 909, 1109, 1170
NlaIV	GGNNCC	4 cut(s)	125, 131, 325, 776
NspI	RCATGY	2 cut(s)	676, 884
PaeI	GCATGC	1 cut(s)	676
PciSI	GCTCTTC	1 cut(s)	597
PctI	GAATGC	2 cut(s)	366, 988
PdmI	GAANNNNTTC	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	224, 1070
PfoI	TCCNGGA	1 cut(s)	119
PinAI	ACCGGT	2 cut(s)	126, 542
PkrI	GCNGC	5 cut(s)	147, 571, 607, 825, 1078
PleI	GAGTC	1 cut(s)	934
PpsI	GAGTC	1 cut(s)	934
Psp124BI	GAGCTC	1 cut(s)	914
Psp6I	CCWGG	1 cut(s)	966
PspFI	CCCAGC	2 cut(s)	280, 364
PspGI	CCWGG	1 cut(s)	966
PspN4I	GGNNCC	4 cut(s)	125, 131, 325, 776
PspPI	GGNCC	1 cut(s)	469
PstI	CTGCAG	1 cut(s)	610
PstNI	CAGNNNCTG	1 cut(s)	314
PsuI	RGATCY	3 cut(s)	116, 439, 1269
RsaI	GTAC	2 cut(s)	168, 1022
RsaNI	GTAC	2 cut(s)	167, 1021
RseI	CAYNNNNRTG	5 cut(s)	254, 750, 904, 1058, 1110
SacI	GAGCTC	1 cut(s)	914
SapI	GCTCTTC	1 cut(s)	597
SaqAI	TTAA	2 cut(s)	785, 1205
SatI	GCNGC	5 cut(s)	146, 570, 606, 824, 1077
Sau3AI	GATC	5 cut(s)	116, 439, 533, 1248, 1269
Sau96I	GGNCC	1 cut(s)	469
ScaI	AGTACT	1 cut(s)	1022
SchI	GAGTC	1 cut(s)	935
ScrFI	CCNGG	2 cut(s)	121, 968
SduI	GDGCHC	5 cut(s)	398, 702, 812, 914, 1001
SfaNI	GCATC	3 cut(s)	117, 249, 908
SfcI	CTRYAG	1 cut(s)	606
SgrAI	CRCCGGYG	1 cut(s)	542
SinI	GGWCC	1 cut(s)	469
SmiMI	CAYNNNNRTG	5 cut(s)	254, 750, 904, 1058, 1110
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
SphI	GCATGC	1 cut(s)	676
Sse9I	AATT	4 cut(s)	787, 813, 919, 1044
SsiI	CCGC	2 cut(s)	145, 995
SspMI	CTAG	5 cut(s)	518, 564, 707, 938, 1300
SstI	GAGCTC	1 cut(s)	914
StyD4I	CCNGG	2 cut(s)	119, 966
StyI	CCWWGG	2 cut(s)	454, 621
TaaI	ACNGT	2 cut(s)	316, 739
TaiI	ACGT	2 cut(s)	141, 1234
TaqI	TCGA	2 cut(s)	530, 929
TasI	AATT	4 cut(s)	787, 813, 919, 1044
TatI	WGTACW	1 cut(s)	1020
TauI	GCSGC	1 cut(s)	148
TfiI	GAWTC	2 cut(s)	224, 1070
Tru1I	TTAA	2 cut(s)	785, 1205
Tru9I	TTAA	2 cut(s)	785, 1205
TscAI	CASTG	3 cut(s)	319, 341, 672
TseI	GCWGC	4 cut(s)	569, 605, 823, 1076
TspDTI	ATGAA	8 cut(s)	42, 461, 848, 894, 1094, 1139, 1183, 1200
TspRI	CASTG	3 cut(s)	319, 341, 672
VpaK11BI	GGWCC	1 cut(s)	469
XapI	RAATTY	2 cut(s)	787, 919
XceI	RCATGY	2 cut(s)	676, 884
XcmI	CCANNNNNNNNNTGG	3 cut(s)	711, 1024, 1251
XmnI	GAANNNNTTC	1 cut(s)	128
XspI	CTAG	5 cut(s)	518, 564, 707, 938, 1300
ZrmI	AGTACT	1 cut(s)	1022

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.