Rh4AG360400

UPF0420 protein C16orf58 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0005337
Physical Location & Seq
Forward (+)
66991617 .. 66996976
5360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG360400.1

Sequence Viewer

Length: 1095 bp
ATGGAGGTATCGTCGGCAATATCGGAGATTATATTGGAAGAATGGAATGGTTCATCTTCAACCAAACTCTCCAGAACTGCCACTATAACTTCGTCTCCTTCACTCTGCATCCAAAGATCCGGGAACCGGTTCCACCATGTTTGGCGGCGAGTTCTTCAAGCTTTTGTACCTGAGGGCTTTCCCAGTAGTGTTACTCCAGATTATGTCCCTTTTCAAATGTGGGATTCACTTCAGGGTCTTTCTACTTACATAAGGATGATGCTTTCTACCCAAGCTCTGCTGGGAGCTATTGGGGTCGGTGAGAAATCAGCCACTGTGATTGGTGCCACCTTTCAGTGGTTCTTGAGGGACTTGACTGGAATGCTGGGAGGTATCTTATTCACATTTTATCAGGGCTCAAATCTGGATAGCAATGCTAAAATGTGGCGCTTAGTTGCAGATCTTATGAATGACCTTGCAATGTTGATGGACCTTGTTTCGCCTTTGTTTCCATCTGCTTTTGTGTTTGTGGTCTGTCTAGGAAGCCTATCGAGATCATTCACCGGTGTTGCAAGTGGAGCAACTAGAGCTGCTTTGACACAACATTTTGCTCTTCAGAATAACGCTGCAGATATATCTGCCAAGGAAGGAAGTCAAGAAACAATGGCAACAATGATTGGTATGGCACTGGGCATGCTTCTTGCTCGTGTAACTATGGAGCACCCACTAGCTATTTGGTTTTCTTTTTTGTCTCTCACCGTGTTCCATATGTATGCAAACTACAAGGCTGTCCGGTGCCTTGCATTAAATTCTTTGAACCCTCAGAGGTGCTCAATTCTTTTGCAGCATTTTATGAAAACCGGCAAAGTTCTCTCACCTGAACAGGTATCTAAGATGGAGCATGTTTTACCCATATGGGCATCTTCATGGAGCTCAAAGAATTCAGAGTCGATGAATGTGGATATATCTCTAGGTGTCAGGGTCTCCTCACTAAATCACCTGGAACTGAGGGAGTTATTGCATTCTGCGGGCTTTCATTACAAGAAAGGTTGGTATCTGCTTTGTGCTTCCAATAAATGGATTTCAGCCATGAACTTTCCTGTTTATATGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF647

Protein Analysis

364

Amino Acids

40.36

Weight (kDa)

8.78

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UVB_sens_prot PF04884 44 - 280 3.4e-93 Vitamin B6 photo-protection and homoeostasis domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 323, 774
AccB7I CCANNNNNTGG 1 cut(s) 1056
AciI CCGC 2 cut(s) 145, 1007
AclWI GGATC 1 cut(s) 111
AcsI RAATTY 2 cut(s) 787, 919
AcuI CTGAAG 2 cut(s) 215, 578
AfaI GTAC 1 cut(s) 168
AfiI CCNNNNNNNGG 3 cut(s) 126, 336, 1056
AgeI ACCGGT 2 cut(s) 126, 542
AgsI TTSAA 4 cut(s) 60, 158, 215, 796
AjnI CCWGG 1 cut(s) 978
AluBI AGCT 6 cut(s) 161, 275, 287, 569, 710, 912
AluI AGCT 6 cut(s) 161, 275, 287, 569, 710, 912
Alw21I GWGCWC 3 cut(s) 702, 812, 914
Alw26I GTCTC 3 cut(s) 99, 735, 967
AlwI GGATC 1 cut(s) 111
AlwNI CAGNNNCTG 1 cut(s) 314
ApeKI GCWGC 3 cut(s) 569, 605, 823
ApoI RAATTY 2 cut(s) 787, 919
AsiGI ACCGGT 2 cut(s) 126, 542
Asp700I GAANNNNTTC 1 cut(s) 128
AspLEI GCGC 1 cut(s) 429
AspS9I GGNCC 1 cut(s) 469
AsuC2I CCSGG 1 cut(s) 121
AsuHPI GGTGA 5 cut(s) 311, 532, 727, 846, 968
AvaII GGWCC 1 cut(s) 469
AxyI CCTNAGG 1 cut(s) 171
BanI GGYRCC 2 cut(s) 323, 774
BanII GRGCYC 2 cut(s) 398, 914
BauI CACGAG 1 cut(s) 684
Bbv12I GWGCWC 3 cut(s) 702, 812, 914
BbvI GCAGC 3 cut(s) 556, 592, 835
BccI CCATC 3 cut(s) 460, 499, 868
BciT130I CCWGG 1 cut(s) 980
BcnI CCSGG 1 cut(s) 121
BcoDI GTCTC 3 cut(s) 99, 735, 967
BfaI CTAG 4 cut(s) 518, 564, 707, 950
BfmI CTRYAG 1 cut(s) 606
BfoI RGCGCY 1 cut(s) 430
BglII AGATCT 1 cut(s) 439
BisI GCNGC 4 cut(s) 146, 570, 606, 824
BlsI GCNGC 4 cut(s) 147, 571, 607, 825
Bme1390I CCNGG 2 cut(s) 121, 980
Bme18I GGWCC 1 cut(s) 469
BmgT120I GGNCC 1 cut(s) 469
BmiI GGNNCC 4 cut(s) 125, 131, 325, 776
BmrFI CCNGG 2 cut(s) 121, 980
BmrI ACTGGG 2 cut(s) 177, 677
BmsI GCATC 3 cut(s) 117, 249, 908
BmuI ACTGGG 2 cut(s) 177, 677
BpmI CTGGAG 2 cut(s) 55, 180
BpuEI CTTGAG 1 cut(s) 364
BpuMI CCSGG 1 cut(s) 121
BsaI GGTCTC 1 cut(s) 967
BsaJI CCNNGG 1 cut(s) 621
BsaWI WCCGGW 3 cut(s) 126, 542, 771
BsaXI ACNNNNNCTCC 3 cut(s) 26, 79, 109
Bsc4I CCNNNNNNNGG 3 cut(s) 126, 336, 1056
Bse118I RCCGGY 3 cut(s) 126, 542, 839
Bse1I ACTGG 3 cut(s) 183, 361, 672
Bse21I CCTNAGG 1 cut(s) 171
Bse3DI GCAATG 2 cut(s) 418, 465
BseBI CCWGG 1 cut(s) 980
BseDI CCNNGG 1 cut(s) 621
BseGI GGATG 2 cut(s) 108, 261
BseLI CCNNNNNNNGG 3 cut(s) 126, 336, 1056
BseMI GCAATG 2 cut(s) 418, 465
BseMII CTCAG 3 cut(s) 162, 815, 977
BseNI ACTGG 3 cut(s) 183, 361, 672
BseRI GAGGAG 1 cut(s) 955
BseXI GCAGC 3 cut(s) 556, 592, 835
BseYI CCCAGC 2 cut(s) 280, 364
BshNI GGYRCC 2 cut(s) 323, 774
BshTI ACCGGT 2 cut(s) 126, 542
BsiHKAI GWGCWC 3 cut(s) 702, 812, 914
BsiSI CCGG 5 cut(s) 120, 127, 543, 772, 840
BslFI GGGAC 2 cut(s) 191, 362
BslI CCNNNNNNNGG 3 cut(s) 126, 336, 1056
BsmAI GTCTC 3 cut(s) 99, 735, 967
BsmBI CGTCTC 1 cut(s) 99
BsmFI GGGAC 2 cut(s) 191, 362
BsmI GAATGC 2 cut(s) 366, 1000
Bso31I GGTCTC 1 cut(s) 967
Bsp1286I GDGCHC 4 cut(s) 398, 702, 812, 914
Bsp143I GATC 3 cut(s) 116, 439, 533
BspACI CCGC 2 cut(s) 145, 1007
BspCNI CTCAG 3 cut(s) 163, 814, 978
BspLI GGNNCC 4 cut(s) 125, 131, 325, 776
BspMAI CTGCAG 1 cut(s) 610
BspPI GGATC 1 cut(s) 111
BspQI GCTCTTC 1 cut(s) 597
BspT107I GGYRCC 2 cut(s) 323, 774
BspTNI GGTCTC 1 cut(s) 967
BsrDI GCAATG 2 cut(s) 418, 465
BsrFI RCCGGY 3 cut(s) 126, 542, 839
BsrI ACTGG 3 cut(s) 183, 361, 672
BssAI RCCGGY 3 cut(s) 126, 542, 839
BssECI CCNNGG 1 cut(s) 621
BssMI GATC 3 cut(s) 116, 439, 533
BssSI CACGAG 1 cut(s) 684
BssT1I CCWWGG 1 cut(s) 621
Bst2BI CACGAG 1 cut(s) 684
Bst2UI CCWGG 1 cut(s) 980
Bst4CI ACNGT 2 cut(s) 316, 739
Bst6I CTCTTC 1 cut(s) 597
BstC8I GCNNGC 2 cut(s) 674, 1009
BstDEI CTNAG 5 cut(s) 171, 430, 801, 870, 986
BstF5I GGATG 2 cut(s) 108, 261
BstH2I RGCGCY 1 cut(s) 430
BstHHI GCGC 1 cut(s) 429
BstKTI GATC 3 cut(s) 119, 442, 536
BstMAI GTCTC 3 cut(s) 99, 735, 967
BstMBI GATC 3 cut(s) 116, 439, 533
BstMWI GCNNNNNNNGC 2 cut(s) 557, 566
BstNI CCWGG 1 cut(s) 980
BstNSI RCATGY 2 cut(s) 676, 884
BstSCI CCNGG 2 cut(s) 119, 978
BstSFI CTRYAG 1 cut(s) 606
BstV1I GCAGC 3 cut(s) 556, 592, 835
BstX2I RGATCY 2 cut(s) 116, 439
BstYI RGATCY 2 cut(s) 116, 439
Bsu36I CCTNAGG 1 cut(s) 171
BtsCI GGATG 2 cut(s) 108, 261
BtsIMutI CAGTG 3 cut(s) 312, 341, 665
Cac8I GCNNGC 2 cut(s) 674, 1009
CaiI CAGNNNCTG 1 cut(s) 314
CfoI GCGC 1 cut(s) 429
Cfr10I RCCGGY 3 cut(s) 126, 542, 839
Cfr13I GGNCC 1 cut(s) 469
Csp6I GTAC 1 cut(s) 167
CspAI ACCGGT 2 cut(s) 126, 542
CspCI CAANNNNNGTGG 4 cut(s) 122, 157, 301, 336
CviAII CATG 5 cut(s) 137, 673, 881, 906, 1069
CviQI GTAC 1 cut(s) 167
DdeI CTNAG 5 cut(s) 171, 430, 801, 870, 986
DpnI GATC 3 cut(s) 118, 441, 535
DpnII GATC 3 cut(s) 116, 439, 533
Eam1104I CTCTTC 1 cut(s) 597
EarI CTCTTC 1 cut(s) 597
Ecl136II GAGCTC 1 cut(s) 912
Eco130I CCWWGG 1 cut(s) 621
Eco24I GRGCYC 2 cut(s) 398, 914
Eco31I GGTCTC 1 cut(s) 967
Eco47I GGWCC 1 cut(s) 469
Eco53kI GAGCTC 1 cut(s) 912
Eco57I CTGAAG 2 cut(s) 215, 578
Eco81I CCTNAGG 1 cut(s) 171
EcoICRI GAGCTC 1 cut(s) 912
EcoRI GAATTC 1 cut(s) 919
EcoRII CCWGG 1 cut(s) 978
EcoT14I CCWWGG 1 cut(s) 621
EcoT38I GRGCYC 2 cut(s) 398, 914
ErhI CCWWGG 1 cut(s) 621
Esp3I CGTCTC 1 cut(s) 99
FaeI CATG 5 cut(s) 140, 676, 884, 909, 1072
FaqI GGGAC 2 cut(s) 191, 362
FatI CATG 5 cut(s) 136, 672, 880, 905, 1068
FauI CCCGC 1 cut(s) 1000
FauNDI CATATG 2 cut(s) 747, 893
Fnu4HI GCNGC 4 cut(s) 146, 570, 606, 824
FokI GGATG 2 cut(s) 95, 268
FriOI GRGCYC 2 cut(s) 398, 914
Fsp4HI GCNGC 4 cut(s) 146, 570, 606, 824
FspBI CTAG 4 cut(s) 518, 564, 707, 950
GlaI GCGC 1 cut(s) 428
GluI GCNGC 4 cut(s) 146, 570, 606, 824
GsaI CCCAGC 2 cut(s) 284, 368
GsuI CTGGAG 2 cut(s) 55, 180
HaeII RGCGCY 1 cut(s) 430
HapII CCGG 5 cut(s) 120, 127, 543, 772, 840
HhaI GCGC 1 cut(s) 429
Hin1II CATG 5 cut(s) 140, 676, 884, 909, 1072
Hin6I GCGC 1 cut(s) 427
HinP1I GCGC 1 cut(s) 427
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 2 cut(s) 224, 926
HpaII CCGG 5 cut(s) 120, 127, 543, 772, 840
HphI GGTGA 5 cut(s) 311, 532, 727, 846, 968
Hpy188I TCNGA 4 cut(s) 25, 597, 804, 925
Hpy188III TCNNGA 6 cut(s) 72, 197, 343, 404, 531, 635
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 2 cut(s) 108, 620
HpyCH4III ACNGT 2 cut(s) 316, 739
HpyCH4V TGCA 9 cut(s) 108, 437, 458, 551, 608, 755, 782, 823, 1000
HpyF10VI GCNNNNNNNGC 2 cut(s) 557, 566
HpyF3I CTNAG 5 cut(s) 171, 430, 801, 870, 986
Hsp92II CATG 5 cut(s) 140, 676, 884, 909, 1072
HspAI GCGC 1 cut(s) 427
Kzo9I GATC 3 cut(s) 116, 439, 533
LguI GCTCTTC 1 cut(s) 597
LmnI GCTCC 5 cut(s) 284, 557, 697, 877, 909
Lsp1109I GCAGC 3 cut(s) 556, 592, 835
LweI GCATC 3 cut(s) 117, 249, 908
MaeI CTAG 4 cut(s) 518, 564, 707, 950
MaeIII GTNAC 2 cut(s) 190, 688
MalI GATC 3 cut(s) 118, 441, 535
MboI GATC 3 cut(s) 116, 439, 533
MboII GAAGA 5 cut(s) 48, 50, 146, 584, 894
MflI RGATCY 2 cut(s) 116, 439
MhlI GDGCHC 4 cut(s) 398, 702, 812, 914
MluCI AATT 3 cut(s) 787, 813, 919
MlyI GAGTC 1 cut(s) 935
MnlI CCTC 7 cut(s) 166, 339, 362, 798, 810, 976, 981
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 1 cut(s) 785
MslI CAYNNNNRTG 3 cut(s) 254, 750, 904
MspI CCGG 5 cut(s) 120, 127, 543, 772, 840
MspR9I CCNGG 2 cut(s) 121, 980
Mva1269I GAATGC 2 cut(s) 366, 1000
MvaI CCWGG 1 cut(s) 980
MwoI GCNNNNNNNGC 2 cut(s) 557, 566
NciI CCSGG 1 cut(s) 121
NdeI CATATG 2 cut(s) 747, 893
NdeII GATC 3 cut(s) 116, 439, 533
NlaIII CATG 5 cut(s) 140, 676, 884, 909, 1072
NlaIV GGNNCC 4 cut(s) 125, 131, 325, 776
NspI RCATGY 2 cut(s) 676, 884
PaeI GCATGC 1 cut(s) 676
PciSI GCTCTTC 1 cut(s) 597
PctI GAATGC 2 cut(s) 366, 1000
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 224
PflMI CCANNNNNTGG 1 cut(s) 1056
PfoI TCCNGGA 1 cut(s) 119
PinAI ACCGGT 2 cut(s) 126, 542
PkrI GCNGC 4 cut(s) 147, 571, 607, 825
PleI GAGTC 1 cut(s) 934
PpsI GAGTC 1 cut(s) 934
Psp124BI GAGCTC 1 cut(s) 914
Psp6I CCWGG 1 cut(s) 978
PspFI CCCAGC 2 cut(s) 280, 364
PspGI CCWGG 1 cut(s) 978
PspN4I GGNNCC 4 cut(s) 125, 131, 325, 776
PspPI GGNCC 1 cut(s) 469
PstI CTGCAG 1 cut(s) 610
PstNI CAGNNNCTG 1 cut(s) 314
PsuI RGATCY 2 cut(s) 116, 439
RsaI GTAC 1 cut(s) 168
RsaNI GTAC 1 cut(s) 167
RseI CAYNNNNRTG 3 cut(s) 254, 750, 904
SacI GAGCTC 1 cut(s) 914
SapI GCTCTTC 1 cut(s) 597
SaqAI TTAA 1 cut(s) 785
SatI GCNGC 4 cut(s) 146, 570, 606, 824
Sau3AI GATC 3 cut(s) 116, 439, 533
Sau96I GGNCC 1 cut(s) 469
SchI GAGTC 1 cut(s) 935
ScrFI CCNGG 2 cut(s) 121, 980
SduI GDGCHC 4 cut(s) 398, 702, 812, 914
SfaNI GCATC 3 cut(s) 117, 249, 908
SfcI CTRYAG 1 cut(s) 606
SgrAI CRCCGGYG 1 cut(s) 542
SinI GGWCC 1 cut(s) 469
SmiMI CAYNNNNRTG 3 cut(s) 254, 750, 904
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
SphI GCATGC 1 cut(s) 676
Sse9I AATT 3 cut(s) 787, 813, 919
SsiI CCGC 2 cut(s) 145, 1007
SspMI CTAG 4 cut(s) 518, 564, 707, 950
SstI GAGCTC 1 cut(s) 914
StyD4I CCNGG 2 cut(s) 119, 978
StyI CCWWGG 1 cut(s) 621
TaaI ACNGT 2 cut(s) 316, 739
TaqI TCGA 2 cut(s) 530, 929
TasI AATT 3 cut(s) 787, 813, 919
TauI GCSGC 1 cut(s) 148
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 1 cut(s) 785
Tru9I TTAA 1 cut(s) 785
TscAI CASTG 3 cut(s) 319, 341, 672
TseI GCWGC 3 cut(s) 569, 605, 823
TspDTI ATGAA 7 cut(s) 42, 461, 848, 894, 947, 1004, 1085
TspRI CASTG 3 cut(s) 319, 341, 672
Van91I CCANNNNNTGG 1 cut(s) 1056
VpaK11BI GGWCC 1 cut(s) 469
XapI RAATTY 2 cut(s) 787, 919
XceI RCATGY 2 cut(s) 676, 884
XcmI CCANNNNNNNNNTGG 1 cut(s) 711
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 4 cut(s) 518, 564, 707, 950
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.