Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0005337

Physical Location & Seq

Genomic Coordinates Forward (+)

4376670 .. 4380680

Gene Structure 4011 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1061400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGAAGTTGCGTCAGCAGAGATCATAGTGGAAGAATGGAACGGCTCCTCTTCCACCAAACTCTCCAGAACCGCCACCATCACTGCGTCTCCTTCCCTCTCTATCCAAAGATCCGGTAGCCCTTTCCACCATGTTTGGAGGCGATTTCTCGAAGCATTTGTACCAGAGGGCTTTCCCAGCAGTGTAACTCCAGATTATGTCCCTTTCCAAGTCTGGGATTTACTCCAGGGTCTTTCTACTTACATAAGGACCATGCTTTCTACACAAGCTCTGCTGAGTGCTATTGGGGTGGGCGAGAAATCGGCTACGGTAATTGGTGCCACCTTTCAGTGGTTTTTGAGAGACTTAACTGGAATGCTTGGAGGTATCTTATTCACGTTCTATCAGGGCTCGAATCTGGATAGCAATGCCAAAATGTGGCGATTAGTTGCAGATCTTATGAATGATCTTGGAATGTTGATGGACCTTGTTTCACCTTTGTTTCCATCGGTTTTTGTGTTTGTTGTTTGTTTAGGAAGCATATCGAGATCATTCACTGGTGTTGCAAGTGGAGCTACTAGAGCTGCTTTGACGCAACATTTTGCCCTTCAGAGTAATGCAGCTGATATATCTGCTAAGGAAGGAAGTCAAGAGACAGTGGCAACAATGGTTGGTATGGCATTGGGTATGCTTCTTGCTCGCGTTACCATGGGACACCCACTAGCTATTTGGTTTTCCTTTTTATCTCTCACCGTGTTCCATATGTATGCAAACTACAAGGCTGTTCGATGCCTTGCGTTAAATTCTTTGAACCCTGAGAGGTGCTCAATTGTTTTGCAGCATTTCATGAAGACTGGCCAAGTTCTCTCTCCTCAACAGATCTCTAAGATGGAGCACGTTTTACCCATATGGGCATCTTCATGGAGCTCAAAGAAGACAGAGTCAATGCATGTGGACGTATCTTTAGGTGTCAGGGTATCCTCACTAAATCACCTGGAACTGAAGGACCTGTTGCATTCTGCAGGATCTCATTATAAGAAAGCCAGGTACTTGTTAATGGAGAGGAAAGGAAACATCTGCATTGTCATGCATAAAGATTCTACAGCAACAGATGTATTGCAGTCATTTTTCCATGCAAATGCCATGGCAAGTCTTACAGATAAACGCCGAATCCTTCATTCTGAAAGCCAAGCATGGATGGATAAACACTACGAAGATTTTATTCAGAAGTTAAAGACATCGGGTTGGAAAACAGAACGTCTCTTATCGCCTACAATCGTTTGGAAGGCAAATTGGATCTGTGGGCCTTCAGATGGAAAGACTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF647

Protein Analysis

436

Amino Acids

48.27

Weight (kDa)

8.85

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UVB_sens_prot	PF04884	43 - 278	2.4e-92	Vitamin B6 photo-protection and homoeostasis domain
UVB_sens_C	PF24160	280 - 425	4.1e-11	Root UVB sensitive protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13770 AT1G13770 AT1G13770 AT1G13770
fragaria_vesca	FvH4_4g30090 FvH4_4g30090 FvH4_4g30090 FvH4_4g30090 FvH4_4g30090
malus_domestica	MD16G1061400.v1.1
prunus_persica	Prupe.1G286700_v2.0.a1 Prupe.1G286700_v2.0.a1 Prupe.1G286700_v2.0.a1 Prupe.1G286700_v2.0.a1 Prupe.1G286700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0438371 RchiOBHm_Chr4g0438391
rosa_multiflora	Rmu_sc0002327.1_g000026
rosa_roxburghii	Rroxscaffold_5G00379420
rosa_rugosa	Rorug04G0309300 Rorug04G0309400 Rorug04G0309500 Rorug04G0309600
rosa_samantha	Rh4AG360400 Rh4BG371300 Rh4CG385300 Rh4DG366200
rosa_wichuraiana	Rw0G006500 Rw0G016450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1014
AccB1I	GGYRCC	1 cut(s)	317
AccB7I	CCANNNNNTGG	1 cut(s)	417
AccII	CGCG	1 cut(s)	681
AciI	CCGC	1 cut(s)	72
AclWI	GGATC	3 cut(s)	105, 1012, 1283
AcoI	YGGCCR	1 cut(s)	835
AcsI	RAATTY	1 cut(s)	781
AcuI	CTGAAG	3 cut(s)	572, 1001, 1272
AfaI	GTAC	2 cut(s)	162, 1028
AfiI	CCNNNNNNNGG	4 cut(s)	214, 330, 417, 1292
AgsI	TTSAA	1 cut(s)	790
AjnI	CCWGG	3 cut(s)	225, 972, 1022
AluBI	AGCT	6 cut(s)	269, 554, 563, 602, 704, 906
AluI	AGCT	6 cut(s)	269, 554, 563, 602, 704, 906
Alw21I	GWGCWC	3 cut(s)	806, 876, 908
Alw26I	GTCTC	4 cut(s)	93, 336, 626, 1244
AlwI	GGATC	3 cut(s)	105, 1012, 1283
AoxI	GGCC	2 cut(s)	835, 1283
ApeKI	GCWGC	3 cut(s)	563, 599, 817
ApoI	RAATTY	1 cut(s)	781
AspS9I	GGNCC	4 cut(s)	249, 463, 985, 1283
AsuHPI	GGTGA	3 cut(s)	465, 721, 962
AvaII	GGWCC	3 cut(s)	249, 463, 985
BalI	TGGCCA	1 cut(s)	837
BanI	GGYRCC	1 cut(s)	317
BanII	GRGCYC	2 cut(s)	392, 908
BarI	GAAGNNNNNNTAC	2 cut(s)	144, 176
BbsI	GAAGAC	2 cut(s)	836, 920
Bbv12I	GWGCWC	3 cut(s)	806, 876, 908
BbvI	GCAGC	3 cut(s)	550, 611, 829
BccI	CCATC	6 cut(s)	86, 454, 493, 862, 1171, 1286
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	3 cut(s)	227, 974, 1024
BciVI	GTATCC	1 cut(s)	967
BcoDI	GTCTC	4 cut(s)	93, 336, 626, 1244
BfaI	CTAG	3 cut(s)	558, 701, 1306
BfmI	CTRYAG	2 cut(s)	999, 1080
BfuI	GTATCC	1 cut(s)	967
BglII	AGATCT	2 cut(s)	433, 858
BisI	GCNGC	3 cut(s)	564, 600, 818
BlsI	GCNGC	3 cut(s)	565, 601, 819
Bme1390I	CCNGG	3 cut(s)	227, 974, 1024
Bme18I	GGWCC	3 cut(s)	249, 463, 985
BmgT120I	GGNCC	4 cut(s)	249, 463, 985, 1283
BmiI	GGNNCC	2 cut(s)	46, 319
BmrFI	CCNGG	3 cut(s)	227, 974, 1024
BmsI	GCATC	2 cut(s)	758, 902
BpiI	GAAGAC	2 cut(s)	836, 920
BplI	GAGNNNNNCTC	2 cut(s)	788, 820
BpmI	CTGGAG	3 cut(s)	49, 174, 209
Bpu10I	CCTNAGC	1 cut(s)	615
BsaJI	CCNNGG	3 cut(s)	226, 687, 1122
BsaWI	WCCGGW	1 cut(s)	113
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
Bsc4I	CCNNNNNNNGG	4 cut(s)	214, 330, 417, 1292
Bse1I	ACTGG	3 cut(s)	355, 541, 838
Bse3DI	GCAATG	1 cut(s)	412
BseBI	CCWGG	3 cut(s)	227, 974, 1024
BseDI	CCNNGG	3 cut(s)	226, 687, 1122
BseGI	GGATG	1 cut(s)	1182
BseLI	CCNNNNNNNGG	4 cut(s)	214, 330, 417, 1292
BseMI	GCAATG	1 cut(s)	412
BseMII	CTCAG	2 cut(s)	266, 786
BseNI	ACTGG	3 cut(s)	355, 541, 838
BseRI	GAGGAG	2 cut(s)	37, 840
BseXI	GCAGC	3 cut(s)	550, 611, 829
BseYI	CCCAGC	1 cut(s)	176
Bsh1236I	CGCG	1 cut(s)	681
BshFI	GGCC	2 cut(s)	837, 1285
BshNI	GGYRCC	1 cut(s)	317
BsiHKAI	GWGCWC	3 cut(s)	806, 876, 908
BsiSI	CCGG	1 cut(s)	114
BslFI	GGGAC	2 cut(s)	185, 705
BslI	CCNNNNNNNGG	4 cut(s)	214, 330, 417, 1292
BsmAI	GTCTC	4 cut(s)	93, 336, 626, 1244
BsmBI	CGTCTC	2 cut(s)	93, 1244
BsmFI	GGGAC	2 cut(s)	185, 705
BsmI	GAATGC	2 cut(s)	360, 994
BsnI	GGCC	2 cut(s)	837, 1285
Bsp1286I	GDGCHC	4 cut(s)	392, 806, 876, 908
Bsp143I	GATC	8 cut(s)	21, 110, 433, 445, 527, 858, 1004, 1275
Bsp19I	CCATGG	2 cut(s)	687, 1122
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	2 cut(s)	837, 1285
BspCNI	CTCAG	2 cut(s)	267, 787
BspFNI	CGCG	1 cut(s)	681
BspHI	TCATGA	1 cut(s)	825
BspLI	GGNNCC	2 cut(s)	46, 319
BspMAI	CTGCAG	1 cut(s)	1003
BspPI	GGATC	3 cut(s)	105, 1012, 1283
BspT107I	GGYRCC	1 cut(s)	317
BsrDI	GCAATG	1 cut(s)	412
BsrI	ACTGG	3 cut(s)	355, 541, 838
BssECI	CCNNGG	3 cut(s)	226, 687, 1122
BssMI	GATC	8 cut(s)	21, 110, 433, 445, 527, 858, 1004, 1275
BssT1I	CCWWGG	2 cut(s)	687, 1122
Bst2UI	CCWGG	3 cut(s)	227, 974, 1024
Bst4CI	ACNGT	3 cut(s)	310, 637, 733
Bst6I	CTCTTC	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	679
BstDEI	CTNAG	4 cut(s)	275, 615, 795, 864
BstDSI	CCRYGG	2 cut(s)	687, 1122
BstF5I	GGATG	1 cut(s)	1182
BstFNI	CGCG	1 cut(s)	681
BstKTI	GATC	8 cut(s)	24, 113, 436, 448, 530, 861, 1007, 1278
BstMAI	GTCTC	4 cut(s)	93, 336, 626, 1244
BstMBI	GATC	8 cut(s)	21, 110, 433, 445, 527, 858, 1004, 1275
BstMWI	GCNNNNNNNGC	3 cut(s)	177, 551, 560
BstNI	CCWGG	3 cut(s)	227, 974, 1024
BstNSI	RCATGY	1 cut(s)	932
BstSCI	CCNGG	3 cut(s)	225, 972, 1022
BstSFI	CTRYAG	2 cut(s)	999, 1080
BstUI	CGCG	1 cut(s)	681
BstV1I	GCAGC	3 cut(s)	550, 611, 829
BstV2I	GAAGAC	2 cut(s)	836, 920
BstX2I	RGATCY	5 cut(s)	110, 433, 858, 1004, 1275
BstYI	RGATCY	5 cut(s)	110, 433, 858, 1004, 1275
BsuI	GTATCC	1 cut(s)	967
BsuRI	GGCC	2 cut(s)	837, 1285
BtgI	CCRYGG	2 cut(s)	687, 1122
BtsCI	GGATG	1 cut(s)	1182
BtsI	GCAGTG	2 cut(s)	81, 187
BtsIMutI	CAGTG	5 cut(s)	81, 187, 335, 534, 642
Cac8I	GCNNGC	1 cut(s)	679
CciI	TCATGA	1 cut(s)	825
Cfr13I	GGNCC	4 cut(s)	249, 463, 985, 1283
CseI	GACGC	2 cut(s)	75, 580
Csp6I	GTAC	2 cut(s)	161, 1027
CspCI	CAANNNNNGTGG	4 cut(s)	116, 151, 912, 947
CviQI	GTAC	2 cut(s)	161, 1027
DdeI	CTNAG	4 cut(s)	275, 615, 795, 864
DpnI	GATC	8 cut(s)	23, 112, 435, 447, 529, 860, 1006, 1277
DpnII	GATC	8 cut(s)	21, 110, 433, 445, 527, 858, 1004, 1275
EaeI	YGGCCR	1 cut(s)	835
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
Ecl136II	GAGCTC	1 cut(s)	906
Eco130I	CCWWGG	2 cut(s)	687, 1122
Eco24I	GRGCYC	2 cut(s)	392, 908
Eco47I	GGWCC	3 cut(s)	249, 463, 985
Eco53kI	GAGCTC	1 cut(s)	906
Eco57I	CTGAAG	3 cut(s)	572, 1001, 1272
EcoICRI	GAGCTC	1 cut(s)	906
EcoO109I	RGGNCCY	1 cut(s)	985
EcoRII	CCWGG	3 cut(s)	225, 972, 1022
EcoT14I	CCWWGG	2 cut(s)	687, 1122
EcoT22I	ATGCAT	2 cut(s)	930, 1071
EcoT38I	GRGCYC	2 cut(s)	392, 908
ErhI	CCWWGG	2 cut(s)	687, 1122
Esp3I	CGTCTC	2 cut(s)	93, 1244
FaqI	GGGAC	2 cut(s)	185, 705
FauNDI	CATATG	2 cut(s)	741, 887
Fnu4HI	GCNGC	3 cut(s)	564, 600, 818
FokI	GGATG	1 cut(s)	1189
FriOI	GRGCYC	2 cut(s)	392, 908
Fsp4HI	GCNGC	3 cut(s)	564, 600, 818
FspBI	CTAG	3 cut(s)	558, 701, 1306
GluI	GCNGC	3 cut(s)	564, 600, 818
GsaI	CCCAGC	1 cut(s)	180
GsuI	CTGGAG	3 cut(s)	49, 174, 209
HaeIII	GGCC	2 cut(s)	837, 1285
HapII	CCGG	1 cut(s)	114
HgaI	GACGC	2 cut(s)	75, 580
HinfI	GANTC	4 cut(s)	394, 920, 1076, 1149
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	3 cut(s)	465, 721, 962
Hpy166II	GTNNAC	1 cut(s)	934
Hpy188I	TCNGA	4 cut(s)	591, 1162, 1206, 1291
Hpy188III	TCNNGA	7 cut(s)	66, 149, 191, 398, 525, 629, 826
Hpy8I	GTNNAC	1 cut(s)	934
HpyAV	CCTTC	7 cut(s)	102, 596, 614, 976, 1163, 1258, 1296
HpyCH4III	ACNGT	3 cut(s)	310, 637, 733
HpyCH4IV	ACGT	4 cut(s)	377, 876, 936, 1237
HpyF10VI	GCNNNNNNNGC	3 cut(s)	177, 551, 560
HpyF3I	CTNAG	4 cut(s)	275, 615, 795, 864
HpySE526I	ACGT	4 cut(s)	377, 876, 936, 1237
Kzo9I	GATC	8 cut(s)	21, 110, 433, 445, 527, 858, 1004, 1275
LmnI	GCTCC	4 cut(s)	50, 551, 871, 903
Lsp1109I	GCAGC	3 cut(s)	550, 611, 829
LweI	GCATC	2 cut(s)	758, 902
MaeI	CTAG	3 cut(s)	558, 701, 1306
MaeII	ACGT	4 cut(s)	377, 876, 936, 1237
MaeIII	GTNAC	2 cut(s)	184, 682
MalI	GATC	8 cut(s)	23, 112, 435, 447, 529, 860, 1006, 1277
MboI	GATC	8 cut(s)	21, 110, 433, 445, 527, 858, 1004, 1275
MboII	GAAGA	6 cut(s)	42, 44, 841, 888, 925, 1205
MfeI	CAATTG	1 cut(s)	807
MflI	RGATCY	5 cut(s)	110, 433, 858, 1004, 1275
MhlI	GDGCHC	4 cut(s)	392, 806, 876, 908
MlsI	TGGCCA	1 cut(s)	837
MluCI	AATT	4 cut(s)	312, 781, 807, 1270
MluNI	TGGCCA	1 cut(s)	837
MlyI	GAGTC	1 cut(s)	929
MmeI	TCCRAC	1 cut(s)	1205
MnlI	CCTC	9 cut(s)	58, 107, 132, 160, 356, 792, 861, 970, 1035
Mox20I	TGGCCA	1 cut(s)	837
Mph1103I	ATGCAT	2 cut(s)	930, 1071
MscI	TGGCCA	1 cut(s)	837
MseI	TTAA	4 cut(s)	347, 779, 1034, 1211
MslI	CAYNNNNRTG	4 cut(s)	744, 898, 1064, 1116
Msp20I	TGGCCA	1 cut(s)	837
MspA1I	CMGCKG	1 cut(s)	602
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	3 cut(s)	227, 974, 1024
MunI	CAATTG	1 cut(s)	807
Mva1269I	GAATGC	2 cut(s)	360, 994
MvaI	CCWGG	3 cut(s)	227, 974, 1024
MvnI	CGCG	1 cut(s)	681
MwoI	GCNNNNNNNGC	3 cut(s)	177, 551, 560
NcoI	CCATGG	2 cut(s)	687, 1122
NdeI	CATATG	2 cut(s)	741, 887
NdeII	GATC	8 cut(s)	21, 110, 433, 445, 527, 858, 1004, 1275
NlaIV	GGNNCC	2 cut(s)	46, 319
NsiI	ATGCAT	2 cut(s)	930, 1071
NspI	RCATGY	1 cut(s)	932
PagI	TCATGA	1 cut(s)	825
PctI	GAATGC	2 cut(s)	360, 994
PfeI	GAWTC	3 cut(s)	394, 1076, 1149
PflFI	GACNNNGTC	1 cut(s)	919
PflMI	CCANNNNNTGG	1 cut(s)	417
PkrI	GCNGC	3 cut(s)	565, 601, 819
PleI	GAGTC	1 cut(s)	928
PpsI	GAGTC	1 cut(s)	928
PpuMI	RGGWCCY	1 cut(s)	985
PsiI	TTATAA	1 cut(s)	1014
Psp124BI	GAGCTC	1 cut(s)	908
Psp5II	RGGWCCY	1 cut(s)	985
Psp6I	CCWGG	3 cut(s)	225, 972, 1022
PspFI	CCCAGC	1 cut(s)	176
PspGI	CCWGG	3 cut(s)	225, 972, 1022
PspN4I	GGNNCC	2 cut(s)	46, 319
PspPI	GGNCC	4 cut(s)	249, 463, 985, 1283
PspPPI	RGGWCCY	1 cut(s)	985
PstI	CTGCAG	1 cut(s)	1003
PsuI	RGATCY	5 cut(s)	110, 433, 858, 1004, 1275
PsyI	GACNNNGTC	1 cut(s)	919
PvuII	CAGCTG	1 cut(s)	602
RsaI	GTAC	2 cut(s)	162, 1028
RsaNI	GTAC	2 cut(s)	161, 1027
RseI	CAYNNNNRTG	4 cut(s)	744, 898, 1064, 1116
SacI	GAGCTC	1 cut(s)	908
SaqAI	TTAA	4 cut(s)	347, 779, 1034, 1211
SatI	GCNGC	3 cut(s)	564, 600, 818
Sau3AI	GATC	8 cut(s)	21, 110, 433, 445, 527, 858, 1004, 1275
Sau96I	GGNCC	4 cut(s)	249, 463, 985, 1283
SchI	GAGTC	1 cut(s)	929
ScrFI	CCNGG	3 cut(s)	227, 974, 1024
SduI	GDGCHC	4 cut(s)	392, 806, 876, 908
SfaNI	GCATC	2 cut(s)	758, 902
SfcI	CTRYAG	2 cut(s)	999, 1080
SinI	GGWCC	3 cut(s)	249, 463, 985
SmiMI	CAYNNNNRTG	4 cut(s)	744, 898, 1064, 1116
Sse9I	AATT	4 cut(s)	312, 781, 807, 1270
SsiI	CCGC	1 cut(s)	72
SspMI	CTAG	3 cut(s)	558, 701, 1306
SstI	GAGCTC	1 cut(s)	908
StyD4I	CCNGG	3 cut(s)	225, 972, 1022
StyI	CCWWGG	2 cut(s)	687, 1122
TaaI	ACNGT	3 cut(s)	310, 637, 733
TaiI	ACGT	4 cut(s)	380, 879, 939, 1240
TaqI	TCGA	4 cut(s)	150, 392, 524, 766
TasI	AATT	4 cut(s)	312, 781, 807, 1270
TfiI	GAWTC	3 cut(s)	394, 1076, 1149
Tru1I	TTAA	4 cut(s)	347, 779, 1034, 1211
Tru9I	TTAA	4 cut(s)	347, 779, 1034, 1211
TscAI	CASTG	5 cut(s)	88, 187, 335, 541, 642
TseI	GCWGC	3 cut(s)	563, 599, 817
TspDTI	ATGAA	5 cut(s)	455, 814, 842, 888, 1145
TspRI	CASTG	5 cut(s)	88, 187, 335, 541, 642
Tth111I	GACNNNGTC	1 cut(s)	919
Van91I	CCANNNNNTGG	1 cut(s)	417
VpaK11BI	GGWCC	3 cut(s)	249, 463, 985
XapI	RAATTY	1 cut(s)	781
XceI	RCATGY	1 cut(s)	932
XcmI	CCANNNNNNNNNTGG	1 cut(s)	705
XspI	CTAG	3 cut(s)	558, 701, 1306
Zsp2I	ATGCAT	2 cut(s)	930, 1071

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.