AT1G13820

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006490
Physical Location & Seq
Forward (+)
4735474 .. 4737910
2437 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G13820.1

Sequence Viewer

Length: 1020 bp
ATGCTCTCAACGGTGACGGCGACGGCGGTTTCTCGACCGATTCTGAAGGTGGAATGTACAATCAAAAGGACGTTTAAAGTGACGGCGGAGAAGTTTCCGACGTTTCTGCCGACCGATGTCGAGAAAATTAAAGACACGTTTGCTCTAAAGCTCGCCGCCAGAATAGAGAGGCTTCCTGTATCTGTGAGCTTCAGGGAAGATAGTATTATGAGCAGTTGCGTGACACCGCTGATGCGGAACGAGACAACTCCTGTTGTGCTTCTTCACGGATTTGATAGTTCTTGTTTAGAGTGGAGATACACTTATCCGTTGCTTGAAGAAGCCGGTTTAGAAACATGGGCATTTGATATCCTTGGTTGGGGTTTTTCTGATTTAGACAAACTTCCACCTTGTGATGTAGCGTCGAAAAGAGAGCACTTTTACAAGTTTTGGAAGTCTCATATTAAAAGGCCTGTGGTTTTGGTTGGTCCGAGCCTCGGTGCTGCTGTCGCAATTGACATTGCGGTCAACCATCCAGAAGCGGTTGAGTCCTTGGTTTTAATGGACGCAAGCGTTTACGCAGAAGGTACTGGAAACTTGGCAACGTTACCTAAAGCAGCAGCTTATGCTGGGGTGTATCTTCTAAAGAGTATTCCATTACGGTTATACGTTAACTTCATATGTTTCAATGGTATCTCATTGGAAACTAGTTGGGACTGGACAAAGATTGGTCGCTTGCATTGTCTATATCCTTGGTGGGAAGATGCAACTGTTAGTTTTATGACTAGCGGAGGATACAACGTAACTTCTCTTATAAAAAAGGTTTCACAGAAGACATTGATACTATGGGGAGAGGATGACCAAATCATTAGCAACAAGCTCGCTTGGAGACTGCACGGAGAATTATCGAATGCACGTGTCAAACAAATATCTAACTGTGGACATCTTCCCCATGTCGAAAAGCCGGCTGCTGTCACTAAACTTATAGCAGAGTTTGTTAGAGAGACTTGCCGGTGTAAAGAGGTTGAAAGTATATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

339

Amino Acids

37.96

Weight (kDa)

7.57

Isoelectric Point (pI)

33.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 84 - 190 1.1e-10 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 85 - 318 9.9e-17 Alpha/beta hydrolase family
Hydrolase_4 PF12146 85 - 186 1.4e-08 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 263 - 315 1.2e-07 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 794
AasI GACNNNNNNGTC 1 cut(s) 503
AciI CCGC 8 cut(s) 26, 86, 156, 227, 235, 503, 521, 768
AclI AACGTT 1 cut(s) 584
AcuI CTGAAG 2 cut(s) 65, 175
AcvI CACGTG 1 cut(s) 896
AdeI CACNNNGTG 1 cut(s) 392
AfaI GTAC 2 cut(s) 58, 568
AfiI CCNNNNNNNGG 2 cut(s) 358, 476
AflIII ACRYGT 2 cut(s) 135, 895
AgsI TTSAA 3 cut(s) 317, 667, 1007
AhlI ACTAGT 1 cut(s) 686
AluBI AGCT 4 cut(s) 151, 189, 602, 859
AluI AGCT 4 cut(s) 151, 189, 602, 859
Alw21I GWGCWC 1 cut(s) 417
Alw26I GTCTC 4 cut(s) 236, 441, 862, 977
AoxI GGCC 1 cut(s) 449
ApeKI GCWGC 4 cut(s) 482, 596, 599, 947
AspS9I GGNCC 1 cut(s) 467
AsuHPI GGTGA 1 cut(s) 25
AvaII GGWCC 1 cut(s) 467
BbrPI CACGTG 1 cut(s) 896
BbsI GAAGAC 1 cut(s) 818
Bbv12I GWGCWC 1 cut(s) 417
BbvI GCAGC 4 cut(s) 469, 608, 611, 934
BccI CCATC 1 cut(s) 519
BceAI ACGGC 3 cut(s) 33, 39, 99
BcgI CGANNNNNNTGC 4 cut(s) 88, 122, 841, 875
BciVI GTATCC 1 cut(s) 767
BcoDI GTCTC 4 cut(s) 236, 441, 862, 977
BcuI ACTAGT 1 cut(s) 686
BfaI CTAG 2 cut(s) 687, 765
BfuI GTATCC 1 cut(s) 767
BisI GCNGC 5 cut(s) 156, 483, 597, 600, 948
BlsI GCNGC 5 cut(s) 157, 484, 598, 601, 949
Bme18I GGWCC 1 cut(s) 467
BmgT120I GGNCC 1 cut(s) 467
BmsI GCATC 2 cut(s) 222, 733
BoxI GACNNNNGTC 1 cut(s) 116
BpiI GAAGAC 1 cut(s) 818
BsaAI YACGTR 1 cut(s) 896
BsaJI CCNNGG 4 cut(s) 352, 475, 531, 731
Bsc4I CCNNNNNNNGG 2 cut(s) 358, 476
Bse118I RCCGGY 3 cut(s) 323, 943, 990
Bse1I ACTGG 2 cut(s) 574, 701
Bse3DI GCAATG 1 cut(s) 498
BseDI CCNNGG 4 cut(s) 352, 475, 531, 731
BseGI GGATG 2 cut(s) 511, 841
BseLI CCNNNNNNNGG 2 cut(s) 358, 476
BseMI GCAATG 1 cut(s) 498
BseNI ACTGG 2 cut(s) 574, 701
BseXI GCAGC 4 cut(s) 469, 608, 611, 934
BseYI CCCAGC 1 cut(s) 608
BsgI GTGCAG 1 cut(s) 857
Bsh1285I CGRYCG 2 cut(s) 38, 114
BshFI GGCC 1 cut(s) 451
BsiEI CGRYCG 2 cut(s) 38, 114
BsiHKAI GWGCWC 1 cut(s) 417
BsiSI CCGG 3 cut(s) 324, 944, 991
BslFI GGGAC 1 cut(s) 707
BslI CCNNNNNNNGG 2 cut(s) 358, 476
BsmAI GTCTC 4 cut(s) 236, 441, 862, 977
BsmFI GGGAC 1 cut(s) 707
BsmI GAATGC 1 cut(s) 895
BsnI GGCC 1 cut(s) 451
Bsp1286I GDGCHC 1 cut(s) 417
Bsp1407I TGTACA 1 cut(s) 56
BspACI CCGC 8 cut(s) 26, 86, 156, 227, 235, 503, 521, 768
BspANI GGCC 1 cut(s) 451
BsrDI GCAATG 1 cut(s) 498
BsrFI RCCGGY 3 cut(s) 323, 943, 990
BsrGI TGTACA 1 cut(s) 56
BsrI ACTGG 2 cut(s) 574, 701
BssAI RCCGGY 3 cut(s) 323, 943, 990
BssECI CCNNGG 4 cut(s) 352, 475, 531, 731
BssT1I CCWWGG 3 cut(s) 352, 531, 731
Bst4CI ACNGT 4 cut(s) 13, 642, 751, 917
BstAPI GCANNNNNTGC 1 cut(s) 605
BstAUI TGTACA 1 cut(s) 56
BstBAI YACGTR 1 cut(s) 896
BstC8I GCNNGC 5 cut(s) 153, 550, 716, 861, 945
BstDEI CTNAG 1 cut(s) 1017
BstF5I GGATG 2 cut(s) 511, 841
BstMAI GTCTC 4 cut(s) 236, 441, 862, 977
BstMCI CGRYCG 2 cut(s) 38, 114
BstMWI GCNNNNNNNGC 2 cut(s) 488, 605
BstPAI GACNNNNGTC 1 cut(s) 116
BstV1I GCAGC 4 cut(s) 469, 608, 611, 934
BstV2I GAAGAC 1 cut(s) 818
BsuI GTATCC 1 cut(s) 767
BsuRI GGCC 1 cut(s) 451
BtsCI GGATG 2 cut(s) 511, 841
Cac8I GCNNGC 5 cut(s) 153, 550, 716, 861, 945
Cfr10I RCCGGY 3 cut(s) 323, 943, 990
Cfr13I GGNCC 1 cut(s) 467
CseI GACGC 2 cut(s) 390, 554
Csp6I GTAC 2 cut(s) 57, 567
CviAII CATG 2 cut(s) 336, 932
CviQI GTAC 2 cut(s) 57, 567
DdeI CTNAG 1 cut(s) 1017
DraI TTTAAA 1 cut(s) 76
DraIII CACNNNGTG 1 cut(s) 392
DrdI GACNNNNNNGTC 1 cut(s) 503
DseDI GACNNNNNNGTC 1 cut(s) 503
EciI GGCGGA 1 cut(s) 101
Eco130I CCWWGG 3 cut(s) 352, 531, 731
Eco147I AGGCCT 1 cut(s) 451
Eco32I GATATC 1 cut(s) 349
Eco47I GGWCC 1 cut(s) 467
Eco57I CTGAAG 2 cut(s) 65, 175
Eco72I CACGTG 1 cut(s) 896
EcoRV GATATC 1 cut(s) 349
EcoT14I CCWWGG 3 cut(s) 352, 531, 731
ErhI CCWWGG 3 cut(s) 352, 531, 731
FaeI CATG 2 cut(s) 339, 935
FalI AAGNNNNNCTT 1 cut(s) 1000
FaqI GGGAC 1 cut(s) 707
FatI CATG 2 cut(s) 335, 931
FauNDI CATATG 1 cut(s) 659
Fnu4HI GCNGC 5 cut(s) 156, 483, 597, 600, 948
FokI GGATG 2 cut(s) 498, 848
Fsp4HI GCNGC 5 cut(s) 156, 483, 597, 600, 948
FspBI CTAG 2 cut(s) 687, 765
GluI GCNGC 5 cut(s) 156, 483, 597, 600, 948
GsaI CCCAGC 1 cut(s) 612
HaeIII GGCC 1 cut(s) 451
HapII CCGG 3 cut(s) 324, 944, 991
HgaI GACGC 2 cut(s) 390, 554
Hin1II CATG 2 cut(s) 339, 935
HincII GTYRAC 2 cut(s) 508, 652
HindII GTYRAC 2 cut(s) 508, 652
HinfI GANTC 2 cut(s) 40, 527
HpaI GTTAAC 1 cut(s) 652
HpaII CCGG 3 cut(s) 324, 944, 991
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 4 cut(s) 508, 556, 652, 920
Hpy188I TCNGA 4 cut(s) 45, 99, 370, 471
Hpy188III TCNNGA 3 cut(s) 33, 121, 515
Hpy8I GTNNAC 4 cut(s) 508, 556, 652, 920
Hpy99I CGWCG 3 cut(s) 25, 103, 406
HpyAV CCTTC 2 cut(s) 40, 557
HpyCH4III ACNGT 4 cut(s) 13, 642, 751, 917
HpyCH4IV ACGT 7 cut(s) 71, 101, 137, 584, 648, 780, 895
HpyCH4V TGCA 4 cut(s) 718, 746, 874, 893
HpyF10VI GCNNNNNNNGC 2 cut(s) 488, 605
HpyF3I CTNAG 1 cut(s) 1017
HpySE526I ACGT 7 cut(s) 71, 101, 137, 584, 648, 780, 895
Hsp92II CATG 2 cut(s) 339, 935
KroI GCCGGC 1 cut(s) 943
KroNI GCCGGC 1 cut(s) 945
KspAI GTTAAC 1 cut(s) 652
Lsp1109I GCAGC 4 cut(s) 469, 608, 611, 934
LweI GCATC 2 cut(s) 222, 733
MaeI CTAG 2 cut(s) 687, 765
MaeII ACGT 7 cut(s) 71, 101, 137, 584, 648, 780, 895
MaeIII GTNAC 6 cut(s) 13, 79, 220, 585, 781, 952
MboII GAAGA 7 cut(s) 209, 254, 329, 611, 752, 823, 917
MfeI CAATTG 1 cut(s) 492
MhlI GDGCHC 1 cut(s) 417
MluCI AATT 3 cut(s) 126, 492, 881
MlyI GAGTC 1 cut(s) 536
MmeI TCCRAC 1 cut(s) 122
MnlI CCTC 5 cut(s) 162, 485, 764, 826, 994
MroNI GCCGGC 1 cut(s) 943
MseI TTAA 5 cut(s) 75, 129, 444, 539, 651
MspA1I CMGCKG 1 cut(s) 229
MspI CCGG 3 cut(s) 324, 944, 991
MunI CAATTG 1 cut(s) 492
Mva1269I GAATGC 1 cut(s) 895
MwoI GCNNNNNNNGC 2 cut(s) 488, 605
NaeI GCCGGC 1 cut(s) 945
NdeI CATATG 1 cut(s) 659
NgoMIV GCCGGC 1 cut(s) 943
NlaIII CATG 2 cut(s) 339, 935
NmuCI GTSAC 4 cut(s) 13, 79, 220, 952
PceI AGGCCT 1 cut(s) 451
PcsI WCGNNNNNNNCGW 2 cut(s) 17, 107
PctI GAATGC 1 cut(s) 895
PdiI GCCGGC 1 cut(s) 945
PfeI GAWTC 1 cut(s) 40
PkrI GCNGC 5 cut(s) 157, 484, 598, 601, 949
PleI GAGTC 1 cut(s) 535
PmaCI CACGTG 1 cut(s) 896
PmlI CACGTG 1 cut(s) 896
PpsI GAGTC 1 cut(s) 535
Ppu21I YACGTR 1 cut(s) 896
PshAI GACNNNNGTC 1 cut(s) 116
PsiI TTATAA 1 cut(s) 794
Psp1406I AACGTT 1 cut(s) 584
PspCI CACGTG 1 cut(s) 896
PspFI CCCAGC 1 cut(s) 608
PspPI GGNCC 1 cut(s) 467
RsaI GTAC 2 cut(s) 58, 568
RsaNI GTAC 2 cut(s) 57, 567
SaqAI TTAA 5 cut(s) 75, 129, 444, 539, 651
SatI GCNGC 5 cut(s) 156, 483, 597, 600, 948
Sau96I GGNCC 1 cut(s) 467
SchI GAGTC 1 cut(s) 536
SduI GDGCHC 1 cut(s) 417
SfaNI GCATC 2 cut(s) 222, 733
SinI GGWCC 1 cut(s) 467
SpeI ACTAGT 1 cut(s) 686
Sse9I AATT 3 cut(s) 126, 492, 881
SseBI AGGCCT 1 cut(s) 451
SsiI CCGC 8 cut(s) 26, 86, 156, 227, 235, 503, 521, 768
SspMI CTAG 2 cut(s) 687, 765
StuI AGGCCT 1 cut(s) 451
StyI CCWWGG 3 cut(s) 352, 531, 731
TaaI ACNGT 4 cut(s) 13, 642, 751, 917
TaiI ACGT 7 cut(s) 74, 104, 140, 587, 651, 783, 898
TaqI TCGA 5 cut(s) 34, 120, 404, 887, 936
TaqII GACCGA 2 cut(s) 52, 128
TasI AATT 3 cut(s) 126, 492, 881
TatI WGTACW 1 cut(s) 56
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 5 cut(s) 75, 129, 444, 539, 651
Tru9I TTAA 5 cut(s) 75, 129, 444, 539, 651
TseFI GTSAC 4 cut(s) 13, 79, 220, 952
TseI GCWGC 4 cut(s) 482, 596, 599, 947
Tsp45I GTSAC 4 cut(s) 13, 79, 220, 952
TspDTI ATGAA 1 cut(s) 646
TspGWI ACGGA 3 cut(s) 282, 297, 891
VpaK11BI GGWCC 1 cut(s) 467
XspI CTAG 2 cut(s) 687, 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.