Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0006490

Physical Location & Seq

Genomic Coordinates Forward (+)

67036351 .. 67039033

Gene Structure 2683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG360900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAGTAGCTGTGTGAAGCCGTTGGTTCGGAGCGAGAAGAGTCCGGTGGTTCTTCTCCATGGTTTTGACAGCTCCTGTTTAGAATGGAGATACACTTATCCATTGCTTGAGGAAGCTGGCCTCGAGACTTGGGCTGTTGACATTCTTGGTTGGGGTTTCTCTGATTTAGAAAGACTCCCCCCATGTAATGTGGCCTCGAAGCGTGACCATTTTTTTCAGCTTTGGAAGTCCTACATTAAAAAGCCAATGATATTGGTTGGACCAAGCCTCGGTGCTGCTGTTGCAATTGACTTTGCAGCCACCTATCCAGAAGCAGTTGAAAGGCTAGTTTTGATTGATGCAAGTGTGTATACAGAAGGCACCGAAAATCAACCAACCTTGTCTAAAATGTTAGCCTATGCTGGAGCATATATATTGAAGAGTTTCCCTTTGCGCTTCTATGTAACCTTTTTGTGCTTCACTGGTATATCATTGACTACCAGCCTAGATTGGACAAATATTGGCCGCTTGCATTGCTGGTTTCCTTGGTGGGAGGATGCACTTGTGGATTTCATGATGAGTGGGGTGTACAATGTTAGTGCCCAGATAGAACAGGTAAAGCAGAGGACACTTATCATATGGGGCGAGGAAGACCAGATCATTAGCAACAAGCTTGGAGTGAGATTGCACTCTGAACTGCCAGATGCAATTATACGACAAATACCAGATTGCGGACACATTCCTCATGTAGAAAGGCCGAGCTCTGTTGCGAAAATGATTCTGGAATTTGTTCGAGAAGCTCAGTACAAAGAGGTTGAATATAGTACTCAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

271

Amino Acids

30.9

Weight (kDa)

5.31

Isoelectric Point (pI)

43.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	13 - 119	2.2e-10	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	15 - 145	6.4e-11	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	16 - 250	5.7e-16	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13820
fragaria_vesca	FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_5g15690
malus_domestica	MD13G1063200.v1.1
prunus_persica	Prupe.1G286400_v2.0.a1 Prupe.1G286400_v2.0.a1
pyrus_communis	pycom13g05550
rosa_chinensis	RchiOBHm_Chr4g0438471
rosa_laevigata	RLG00000006361
rosa_multiflora	Rmu_sc0002327.1_g000021
rosa_roxburghii	Rroxscaffold_5G00379480
rosa_rugosa	Rorug04G0310100 Rorug04G0310100
rosa_samantha	Rh4AG360900 Rh4BG372200 Rh4CG386200 Rh4DG367000
rosa_wichuraiana	Rw0G006570 Rw0G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	359
AccI	GTMKAC	1 cut(s)	350
AciI	CCGC	2 cut(s)	505, 711
AcoI	YGGCCR	1 cut(s)	502
AcsI	RAATTY	1 cut(s)	764
AfaI	GTAC	3 cut(s)	569, 785, 805
AfiI	CCNNNNNNNGG	2 cut(s)	269, 710
AgsI	TTSAA	3 cut(s)	320, 418, 797
AluBI	AGCT	7 cut(s)	9, 72, 116, 220, 652, 741, 779
AluI	AGCT	7 cut(s)	9, 72, 116, 220, 652, 741, 779
Alw21I	GWGCWC	1 cut(s)	743
Alw26I	GTCTC	1 cut(s)	119
AlwNI	CAGNNNCTG	1 cut(s)	75
Ama87I	CYCGRG	1 cut(s)	122
AoxI	GGCC	4 cut(s)	118, 192, 502, 734
ApeKI	GCWGC	2 cut(s)	275, 296
ApoI	RAATTY	1 cut(s)	764
Asp700I	GAANNNNTTC	2 cut(s)	422, 768
AspLEI	GCGC	1 cut(s)	435
AspS9I	GGNCC	1 cut(s)	260
AvaI	CYCGRG	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	260
BaeGI	GKGCMC	1 cut(s)	583
BanI	GGYRCC	1 cut(s)	359
BanII	GRGCYC	1 cut(s)	743
BbsI	GAAGAC	1 cut(s)	636
Bbv12I	GWGCWC	1 cut(s)	743
BbvI	GCAGC	2 cut(s)	262, 308
BceAI	ACGGC	1 cut(s)	4
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	2 cut(s)	326, 485
BisI	GCNGC	3 cut(s)	276, 297, 505
BlsI	GCNGC	3 cut(s)	277, 298, 506
BmcAI	AGTACT	1 cut(s)	805
Bme18I	GGWCC	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	361
BmsI	GCATC	3 cut(s)	328, 526, 673
BpiI	GAAGAC	1 cut(s)	636
BpmI	CTGGAG	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	128
BsaJI	CCNNGG	3 cut(s)	58, 268, 524
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 710
Bse1I	ACTGG	1 cut(s)	466
Bse3DI	GCAATG	2 cut(s)	101, 511
BseDI	CCNNGG	3 cut(s)	58, 268, 524
BseGI	GGATG	1 cut(s)	541
BseLI	CCNNNNNNNGG	2 cut(s)	269, 710
BseMI	GCAATG	2 cut(s)	101, 511
BseMII	CTCAG	1 cut(s)	794
BseNI	ACTGG	1 cut(s)	466
BseSI	GKGCMC	1 cut(s)	583
BseXI	GCAGC	2 cut(s)	262, 308
BshFI	GGCC	4 cut(s)	120, 194, 504, 736
BshNI	GGYRCC	1 cut(s)	359
BsiHKAI	GWGCWC	1 cut(s)	743
BsiHKCI	CYCGRG	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	44
BslI	CCNNNNNNNGG	2 cut(s)	269, 710
BsmAI	GTCTC	1 cut(s)	119
BsnI	GGCC	4 cut(s)	120, 194, 504, 736
BsoBI	CYCGRG	1 cut(s)	122
Bsp1286I	GDGCHC	2 cut(s)	583, 743
Bsp1407I	TGTACA	1 cut(s)	567
Bsp143I	GATC	1 cut(s)	636
Bsp19I	CCATGG	1 cut(s)	58
BspACI	CCGC	2 cut(s)	505, 711
BspANI	GGCC	4 cut(s)	120, 194, 504, 736
BspCNI	CTCAG	1 cut(s)	793
BspHI	TCATGA	1 cut(s)	552
BspLI	GGNNCC	1 cut(s)	361
BspT107I	GGYRCC	1 cut(s)	359
BsrDI	GCAATG	2 cut(s)	101, 511
BsrGI	TGTACA	1 cut(s)	567
BsrI	ACTGG	1 cut(s)	466
BssECI	CCNNGG	3 cut(s)	58, 268, 524
BssMI	GATC	1 cut(s)	636
BssNAI	GTATAC	1 cut(s)	351
BssT1I	CCWWGG	2 cut(s)	58, 524
Bst1107I	GTATAC	1 cut(s)	351
Bst6I	CTCTTC	2 cut(s)	32, 413
BstAUI	TGTACA	1 cut(s)	567
BstC8I	GCNNGC	2 cut(s)	118, 509
BstDEI	CTNAG	1 cut(s)	780
BstDSI	CCRYGG	1 cut(s)	58
BstF5I	GGATG	1 cut(s)	541
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	1 cut(s)	639
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	1 cut(s)	636
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 513
BstSLI	GKGCMC	1 cut(s)	583
BstV1I	GCAGC	2 cut(s)	262, 308
BstV2I	GAAGAC	1 cut(s)	636
BstZ17I	GTATAC	1 cut(s)	351
BsuRI	GGCC	4 cut(s)	120, 194, 504, 736
BtgI	CCRYGG	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	541
BtsIMutI	CAGTG	1 cut(s)	459
Cac8I	GCNNGC	2 cut(s)	118, 509
CaiI	CAGNNNCTG	1 cut(s)	75
CciI	TCATGA	1 cut(s)	552
CfoI	GCGC	1 cut(s)	435
Cfr13I	GGNCC	1 cut(s)	260
Csp6I	GTAC	3 cut(s)	568, 784, 804
CviAII	CATG	4 cut(s)	59, 183, 553, 725
CviQI	GTAC	3 cut(s)	568, 784, 804
DdeI	CTNAG	1 cut(s)	780
DpnI	GATC	1 cut(s)	638
DpnII	GATC	1 cut(s)	636
EaeI	YGGCCR	1 cut(s)	502
Eam1104I	CTCTTC	2 cut(s)	32, 413
EarI	CTCTTC	2 cut(s)	32, 413
Ecl136II	GAGCTC	1 cut(s)	741
Eco130I	CCWWGG	2 cut(s)	58, 524
Eco24I	GRGCYC	1 cut(s)	743
Eco47I	GGWCC	1 cut(s)	260
Eco53kI	GAGCTC	1 cut(s)	741
Eco88I	CYCGRG	1 cut(s)	122
EcoICRI	GAGCTC	1 cut(s)	741
EcoT14I	CCWWGG	2 cut(s)	58, 524
EcoT38I	GRGCYC	1 cut(s)	743
ErhI	CCWWGG	2 cut(s)	58, 524
FaeI	CATG	4 cut(s)	62, 186, 556, 728
FatI	CATG	4 cut(s)	58, 182, 552, 724
FauNDI	CATATG	1 cut(s)	617
FblI	GTMKAC	1 cut(s)	350
Fnu4HI	GCNGC	3 cut(s)	276, 297, 505
FokI	GGATG	1 cut(s)	548
FriOI	GRGCYC	1 cut(s)	743
Fsp4HI	GCNGC	3 cut(s)	276, 297, 505
FspBI	CTAG	2 cut(s)	326, 485
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	3 cut(s)	276, 297, 505
GsuI	CTGGAG	1 cut(s)	423
HaeIII	GGCC	4 cut(s)	120, 194, 504, 736
HapII	CCGG	1 cut(s)	44
HhaI	GCGC	1 cut(s)	435
Hin1II	CATG	4 cut(s)	62, 186, 556, 728
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	650
HinfI	GANTC	3 cut(s)	40, 174, 757
HpaII	CCGG	1 cut(s)	44
Hpy166II	GTNNAC	3 cut(s)	139, 351, 568
Hpy188I	TCNGA	4 cut(s)	30, 163, 673, 815
Hpy188III	TCNNGA	5 cut(s)	124, 308, 553, 761, 773
Hpy8I	GTNNAC	3 cut(s)	139, 351, 568
HpyAV	CCTTC	1 cut(s)	350
HpyCH4V	TGCA	7 cut(s)	284, 296, 341, 511, 539, 667, 686
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 513
HpyF3I	CTNAG	1 cut(s)	780
Hsp92II	CATG	4 cut(s)	62, 186, 556, 728
HspAI	GCGC	1 cut(s)	433
Kzo9I	GATC	1 cut(s)	636
LmnI	GCTCC	3 cut(s)	30, 77, 404
Lsp1109I	GCAGC	2 cut(s)	262, 308
LweI	GCATC	3 cut(s)	328, 526, 673
MaeI	CTAG	2 cut(s)	326, 485
MaeIII	GTNAC	2 cut(s)	203, 442
MalI	GATC	1 cut(s)	638
MboI	GATC	1 cut(s)	636
MboII	GAAGA	4 cut(s)	44, 49, 430, 641
MfeI	CAATTG	1 cut(s)	285
MhlI	GDGCHC	2 cut(s)	583, 743
MluCI	AATT	4 cut(s)	285, 687, 764, 809
MlyI	GAGTC	2 cut(s)	49, 168
MmeI	TCCRAC	1 cut(s)	238
MnlI	CCTC	9 cut(s)	103, 131, 205, 278, 526, 597, 619, 732, 784
MroXI	GAANNNNTTC	2 cut(s)	422, 768
MseI	TTAA	1 cut(s)	237
MspI	CCGG	1 cut(s)	44
MunI	CAATTG	1 cut(s)	285
MwoI	GCNNNNNNNGC	2 cut(s)	281, 513
NcoI	CCATGG	1 cut(s)	58
NdeI	CATATG	1 cut(s)	617
NdeII	GATC	1 cut(s)	636
NlaIII	CATG	4 cut(s)	62, 186, 556, 728
NlaIV	GGNNCC	1 cut(s)	361
NmeAIII	GCCGAG	1 cut(s)	762
NmuCI	GTSAC	1 cut(s)	203
PaeR7I	CTCGAG	1 cut(s)	122
PagI	TCATGA	1 cut(s)	552
PdmI	GAANNNNTTC	2 cut(s)	422, 768
PfeI	GAWTC	1 cut(s)	757
PkrI	GCNGC	3 cut(s)	277, 298, 506
PleI	GAGTC	2 cut(s)	48, 168
PpsI	GAGTC	2 cut(s)	48, 168
Psp124BI	GAGCTC	1 cut(s)	743
PspN4I	GGNNCC	1 cut(s)	361
PspPI	GGNCC	1 cut(s)	260
PstNI	CAGNNNCTG	1 cut(s)	75
RsaI	GTAC	3 cut(s)	569, 785, 805
RsaNI	GTAC	3 cut(s)	568, 784, 804
SacI	GAGCTC	1 cut(s)	743
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	3 cut(s)	276, 297, 505
Sau3AI	GATC	1 cut(s)	636
Sau96I	GGNCC	1 cut(s)	260
ScaI	AGTACT	1 cut(s)	805
SchI	GAGTC	2 cut(s)	49, 168
SduI	GDGCHC	2 cut(s)	583, 743
SfaNI	GCATC	3 cut(s)	328, 526, 673
Sfr274I	CTCGAG	1 cut(s)	122
SinI	GGWCC	1 cut(s)	260
SlaI	CTCGAG	1 cut(s)	122
SmlI	CTYRAG	2 cut(s)	107, 122
SmoI	CTYRAG	2 cut(s)	107, 122
Sse9I	AATT	4 cut(s)	285, 687, 764, 809
SsiI	CCGC	2 cut(s)	505, 711
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	2 cut(s)	326, 485
SstI	GAGCTC	1 cut(s)	743
StyI	CCWWGG	2 cut(s)	58, 524
TaqI	TCGA	3 cut(s)	123, 197, 772
TasI	AATT	4 cut(s)	285, 687, 764, 809
TatI	WGTACW	3 cut(s)	567, 783, 803
TauI	GCSGC	1 cut(s)	507
TfiI	GAWTC	1 cut(s)	757
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	466
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	2 cut(s)	275, 296
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	541
TspRI	CASTG	1 cut(s)	466
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	1 cut(s)	764
XhoI	CTCGAG	1 cut(s)	122
XmiI	GTMKAC	1 cut(s)	350
XmnI	GAANNNNTTC	2 cut(s)	422, 768
XspI	CTAG	2 cut(s)	326, 485
ZrmI	AGTACT	1 cut(s)	805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.