Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006490

Physical Location & Seq

Genomic Coordinates Reverse (-)

28687851 .. 28691597

Gene Structure 3747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G286400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGCTAAGTCTCACAGGCGGCTCTACACCATCCATTGCCGCGAAATGCACAATCCAAAGAGGCTTCAGGGTCCGGTCCGTTGCTGGGTTCCCTTCTTTCCTTCCCAAAGAGGTCGAAAAGATCAAAGACCCTTTCGCTCGAAAGCTCGCTGCACGAATCGAAAGGCTGCCTGTGAGCTTTGGAGAAAATTGTGTGATGAGTAGTTGTGTGAAGCCATTGGTACAGAGCAACACAAGTCCAGTGGTTCTTCTCCATGGTTTTGACAGCTCCTGTTTAGAATGGAGATACACTTATCCATTGCTTGAGGAAGCTGGCTTGGAGACTTGGGCTGTTGACATTCTTGGCTGGGGTTTCTCTGATTTGGAAAGACTTCCCTCCTGCAATGTGGCCTCTAAGCGTGACCATTTTTTCCAGCTTTGGGAATCCTACATTAAAAAGCCAATGATATTGGTTGGACCAAGCCTTGGTGCTGCTGTTGCAATTGACTTTGCAGTCAGCCATCCAGAAGCTGTCGAAAGGCTGGTTTTGATTGATGCAAGTGTGTATACAGAAGGCACTGGAGATCTAGCAAGCATGCCTAAAATGTTAGCCTATGCTGGAGTATCTTTATTGAAGAGTCTCCCACTGCGCTTCTATGTAAACTTTTTGTGCTTCAGTGGCATATCACTCAGTACCAATTTAGATTGGGCTAATGTGGGCCGCTTGCACTGTCTGTTTCCTTGGTGGGAGGATGCAACTGTGGATTTCATGATGAGTGGGGGTTATAATGTTAGTGCCCAGATAGAACAGGTAAAACAGAAGACTCTTATCATATGGGGAGAGGATGACCAGATTATTAGCAGCAAGCTTGGAGTGAGATTGCACTGTGAACTGCCAAATGCAGTTATACGACAAATACCAGATTGCGGACACATTCCTCATGTGGAAAAACCAAGCTCTGTTGCTAAAATGATTGTGGAATTGGTTCAACAAGATCAGTACAAAGAGGTTCAACGTATTTCTCAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

337

Amino Acids

37.4

Weight (kDa)

6.19

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13820
fragaria_vesca	FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_5g15690
malus_domestica	MD13G1063200.v1.1
prunus_persica	Prupe.1G286400_v2.0.a1 Prupe.1G286400_v2.0.a1
pyrus_communis	pycom13g05550
rosa_chinensis	RchiOBHm_Chr4g0438471
rosa_laevigata	RLG00000006361
rosa_multiflora	Rmu_sc0002327.1_g000021
rosa_roxburghii	Rroxscaffold_5G00379480
rosa_rugosa	Rorug04G0310100 Rorug04G0310100
rosa_samantha	Rh4AG360900 Rh4BG372200 Rh4CG386200 Rh4DG367000
rosa_wichuraiana	Rw0G006570 Rw0G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	765
AasI	GACNNNNNNGTC	1 cut(s)	491
AccB7I	CCANNNNNTGG	1 cut(s)	464
AccI	GTMKAC	1 cut(s)	545
AccII	CGCG	1 cut(s)	41
AciI	CCGC	4 cut(s)	18, 39, 700, 906
AcuI	CTGAAG	2 cut(s)	49, 637
AfaI	GTAC	3 cut(s)	222, 673, 980
AfiI	CCNNNNNNNGG	4 cut(s)	84, 418, 464, 905
AgsI	TTSAA	3 cut(s)	613, 968, 992
AluBI	AGCT	8 cut(s)	145, 177, 267, 311, 415, 509, 847, 936
AluI	AGCT	8 cut(s)	145, 177, 267, 311, 415, 509, 847, 936
Alw26I	GTCTC	3 cut(s)	14, 314, 623
AlwNI	CAGNNNCTG	2 cut(s)	270, 509
AoxI	GGCC	2 cut(s)	387, 697
ApeKI	GCWGC	4 cut(s)	149, 166, 470, 840
Asp700I	GAANNNNTTC	2 cut(s)	369, 963
AspLEI	GCGC	1 cut(s)	630
AspS9I	GGNCC	4 cut(s)	70, 75, 455, 697
AvaII	GGWCC	3 cut(s)	70, 75, 455
BaeGI	GKGCMC	1 cut(s)	778
BbsI	GAAGAC	1 cut(s)	806
BbvI	GCAGC	4 cut(s)	136, 153, 457, 852
BccI	CCATC	2 cut(s)	37, 507
BcoDI	GTCTC	3 cut(s)	14, 314, 623
BfaI	CTAG	1 cut(s)	566
BglII	AGATCT	1 cut(s)	562
BisI	GCNGC	7 cut(s)	19, 39, 150, 167, 471, 700, 841
BlsI	GCNGC	7 cut(s)	20, 40, 151, 168, 472, 701, 842
Bme18I	GGWCC	3 cut(s)	70, 75, 455
BmgT120I	GGNCC	4 cut(s)	70, 75, 455, 697
BmiI	GGNNCC	2 cut(s)	71, 89
BmsI	GCATC	2 cut(s)	523, 721
BpiI	GAAGAC	1 cut(s)	806
BpmI	CTGGAG	2 cut(s)	579, 618
BpuEI	CTTGAG	1 cut(s)	323
BsaJI	CCNNGG	3 cut(s)	253, 463, 719
BsaWI	WCCGGW	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 418, 464, 905
Bse1I	ACTGG	2 cut(s)	239, 562
Bse3DI	GCAATG	3 cut(s)	33, 296, 388
BseDI	CCNNGG	3 cut(s)	253, 463, 719
BseGI	GGATG	4 cut(s)	29, 499, 736, 829
BseLI	CCNNNNNNNGG	4 cut(s)	84, 418, 464, 905
BseMI	GCAATG	3 cut(s)	33, 296, 388
BseMII	CTCAG	1 cut(s)	682
BseNI	ACTGG	2 cut(s)	239, 562
BseSI	GKGCMC	1 cut(s)	778
BseXI	GCAGC	4 cut(s)	136, 153, 457, 852
BseYI	CCCAGC	2 cut(s)	83, 345
BsgI	GTGCAG	1 cut(s)	135
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	2 cut(s)	389, 699
BsiSI	CCGG	1 cut(s)	73
BslI	CCNNNNNNNGG	4 cut(s)	84, 418, 464, 905
BsmAI	GTCTC	3 cut(s)	14, 314, 623
BsnI	GGCC	2 cut(s)	389, 699
Bsp1286I	GDGCHC	1 cut(s)	778
Bsp143I	GATC	3 cut(s)	120, 562, 973
Bsp19I	CCATGG	1 cut(s)	253
BspACI	CCGC	4 cut(s)	18, 39, 700, 906
BspANI	GGCC	2 cut(s)	389, 699
BspCNI	CTCAG	1 cut(s)	681
BspFNI	CGCG	1 cut(s)	41
BspHI	TCATGA	1 cut(s)	747
BspLI	GGNNCC	2 cut(s)	71, 89
BsrDI	GCAATG	3 cut(s)	33, 296, 388
BsrI	ACTGG	2 cut(s)	239, 562
BssECI	CCNNGG	3 cut(s)	253, 463, 719
BssMI	GATC	3 cut(s)	120, 562, 973
BssNAI	GTATAC	1 cut(s)	546
BssT1I	CCWWGG	3 cut(s)	253, 463, 719
Bst1107I	GTATAC	1 cut(s)	546
Bst4CI	ACNGT	3 cut(s)	710, 739, 866
Bst6I	CTCTTC	1 cut(s)	608
BstC8I	GCNNGC	6 cut(s)	147, 313, 571, 575, 704, 845
BstDEI	CTNAG	3 cut(s)	5, 393, 668
BstDSI	CCRYGG	1 cut(s)	253
BstF5I	GGATG	4 cut(s)	29, 499, 736, 829
BstFNI	CGCG	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	630
BstKTI	GATC	3 cut(s)	123, 565, 976
BstMAI	GTCTC	3 cut(s)	14, 314, 623
BstMBI	GATC	3 cut(s)	120, 562, 973
BstMWI	GCNNNNNNNGC	2 cut(s)	476, 657
BstNSI	RCATGY	1 cut(s)	577
BstSLI	GKGCMC	1 cut(s)	778
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	4 cut(s)	136, 153, 457, 852
BstV2I	GAAGAC	1 cut(s)	806
BstX2I	RGATCY	1 cut(s)	562
BstYI	RGATCY	1 cut(s)	562
BstZ17I	GTATAC	1 cut(s)	546
BsuRI	GGCC	2 cut(s)	389, 699
BtgI	CCRYGG	1 cut(s)	253
BtsCI	GGATG	4 cut(s)	29, 499, 736, 829
BtsI	GCAGTG	1 cut(s)	623
BtsIMutI	CAGTG	6 cut(s)	246, 555, 623, 661, 706, 862
Cac8I	GCNNGC	6 cut(s)	147, 313, 571, 575, 704, 845
CaiI	CAGNNNCTG	2 cut(s)	270, 509
CciI	TCATGA	1 cut(s)	747
CfoI	GCGC	1 cut(s)	630
Cfr13I	GGNCC	4 cut(s)	70, 75, 455, 697
CpoI	CGGWCCG	1 cut(s)	75
Csp6I	GTAC	3 cut(s)	221, 672, 979
CspCI	CAANNNNNGTGG	2 cut(s)	222, 257
CspI	CGGWCCG	1 cut(s)	75
CviAII	CATG	4 cut(s)	254, 574, 748, 920
CviQI	GTAC	3 cut(s)	221, 672, 979
DdeI	CTNAG	3 cut(s)	5, 393, 668
DpnI	GATC	3 cut(s)	122, 564, 975
DpnII	GATC	3 cut(s)	120, 562, 973
DrdI	GACNNNNNNGTC	1 cut(s)	491
DseDI	GACNNNNNNGTC	1 cut(s)	491
Eam1104I	CTCTTC	1 cut(s)	608
EarI	CTCTTC	1 cut(s)	608
Eco130I	CCWWGG	3 cut(s)	253, 463, 719
Eco47I	GGWCC	3 cut(s)	70, 75, 455
Eco57I	CTGAAG	2 cut(s)	49, 637
EcoT14I	CCWWGG	3 cut(s)	253, 463, 719
ErhI	CCWWGG	3 cut(s)	253, 463, 719
FaeI	CATG	4 cut(s)	257, 577, 751, 923
FatI	CATG	4 cut(s)	253, 573, 747, 919
FauNDI	CATATG	1 cut(s)	812
FblI	GTMKAC	1 cut(s)	545
Fnu4HI	GCNGC	7 cut(s)	19, 39, 150, 167, 471, 700, 841
FokI	GGATG	4 cut(s)	16, 486, 743, 836
Fsp4HI	GCNGC	7 cut(s)	19, 39, 150, 167, 471, 700, 841
FspBI	CTAG	1 cut(s)	566
GlaI	GCGC	1 cut(s)	629
GluI	GCNGC	7 cut(s)	19, 39, 150, 167, 471, 700, 841
GsaI	CCCAGC	2 cut(s)	87, 349
GsuI	CTGGAG	2 cut(s)	579, 618
HaeIII	GGCC	2 cut(s)	389, 699
HapII	CCGG	1 cut(s)	73
HhaI	GCGC	1 cut(s)	630
Hin1II	CATG	4 cut(s)	257, 577, 751, 923
Hin6I	GCGC	1 cut(s)	628
HinP1I	GCGC	1 cut(s)	628
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HindIII	AAGCTT	1 cut(s)	845
HinfI	GANTC	4 cut(s)	156, 422, 616, 802
HpaII	CCGG	1 cut(s)	73
Hpy166II	GTNNAC	4 cut(s)	334, 546, 640, 869
Hpy188I	TCNGA	1 cut(s)	358
Hpy188III	TCNNGA	2 cut(s)	503, 748
Hpy8I	GTNNAC	4 cut(s)	334, 546, 640, 869
HpyAV	CCTTC	3 cut(s)	102, 110, 545
HpyCH4III	ACNGT	3 cut(s)	710, 739, 866
HpyCH4IV	ACGT	1 cut(s)	994
HpyF10VI	GCNNNNNNNGC	2 cut(s)	476, 657
HpyF3I	CTNAG	3 cut(s)	5, 393, 668
HpySE526I	ACGT	1 cut(s)	994
Hsp92II	CATG	4 cut(s)	257, 577, 751, 923
HspAI	GCGC	1 cut(s)	628
Kzo9I	GATC	3 cut(s)	120, 562, 973
LmnI	GCTCC	1 cut(s)	272
Lsp1109I	GCAGC	4 cut(s)	136, 153, 457, 852
LweI	GCATC	2 cut(s)	523, 721
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	1 cut(s)	994
MaeIII	GTNAC	1 cut(s)	398
MalI	GATC	3 cut(s)	122, 564, 975
MboI	GATC	3 cut(s)	120, 562, 973
MboII	GAAGA	3 cut(s)	239, 625, 811
MfeI	CAATTG	1 cut(s)	480
MflI	RGATCY	1 cut(s)	562
MhlI	GDGCHC	1 cut(s)	778
MluCI	AATT	5 cut(s)	187, 480, 676, 959, 1004
MlyI	GAGTC	2 cut(s)	625, 796
MmeI	TCCRAC	1 cut(s)	433
MnlI	CCTC	9 cut(s)	53, 103, 298, 385, 400, 721, 814, 927, 979
MroXI	GAANNNNTTC	2 cut(s)	369, 963
MseI	TTAA	1 cut(s)	432
MspI	CCGG	1 cut(s)	73
MunI	CAATTG	1 cut(s)	480
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	476, 657
NcoI	CCATGG	1 cut(s)	253
NdeI	CATATG	1 cut(s)	812
NdeII	GATC	3 cut(s)	120, 562, 973
NlaIII	CATG	4 cut(s)	257, 577, 751, 923
NlaIV	GGNNCC	2 cut(s)	71, 89
NmuCI	GTSAC	1 cut(s)	398
NspI	RCATGY	1 cut(s)	577
PaeI	GCATGC	1 cut(s)	577
PagI	TCATGA	1 cut(s)	747
PdmI	GAANNNNTTC	2 cut(s)	369, 963
PfeI	GAWTC	2 cut(s)	156, 422
PflMI	CCANNNNNTGG	1 cut(s)	464
PkrI	GCNGC	7 cut(s)	20, 40, 151, 168, 472, 701, 842
PleI	GAGTC	2 cut(s)	624, 796
PpsI	GAGTC	2 cut(s)	624, 796
PsiI	TTATAA	1 cut(s)	765
PspFI	CCCAGC	2 cut(s)	83, 345
PspN4I	GGNNCC	2 cut(s)	71, 89
PspPI	GGNCC	4 cut(s)	70, 75, 455, 697
PstNI	CAGNNNCTG	2 cut(s)	270, 509
PsuI	RGATCY	1 cut(s)	562
RsaI	GTAC	3 cut(s)	222, 673, 980
RsaNI	GTAC	3 cut(s)	221, 672, 979
Rsr2I	CGGWCCG	1 cut(s)	75
RsrII	CGGWCCG	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	7 cut(s)	19, 39, 150, 167, 471, 700, 841
Sau3AI	GATC	3 cut(s)	120, 562, 973
Sau96I	GGNCC	4 cut(s)	70, 75, 455, 697
SchI	GAGTC	2 cut(s)	625, 796
SduI	GDGCHC	1 cut(s)	778
SfaNI	GCATC	2 cut(s)	523, 721
SinI	GGWCC	3 cut(s)	70, 75, 455
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
SphI	GCATGC	1 cut(s)	577
Sse9I	AATT	5 cut(s)	187, 480, 676, 959, 1004
SsiI	CCGC	4 cut(s)	18, 39, 700, 906
SspMI	CTAG	1 cut(s)	566
StyI	CCWWGG	3 cut(s)	253, 463, 719
TaaI	ACNGT	3 cut(s)	710, 739, 866
TaiI	ACGT	1 cut(s)	997
TaqI	TCGA	4 cut(s)	114, 139, 159, 513
TasI	AATT	5 cut(s)	187, 480, 676, 959, 1004
TatI	WGTACW	1 cut(s)	978
TauI	GCSGC	3 cut(s)	21, 41, 702
TfiI	GAWTC	2 cut(s)	156, 422
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TscAI	CASTG	6 cut(s)	246, 562, 630, 661, 713, 869
TseFI	GTSAC	1 cut(s)	398
TseI	GCWGC	4 cut(s)	149, 166, 470, 840
Tsp45I	GTSAC	1 cut(s)	398
TspDTI	ATGAA	1 cut(s)	736
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	6 cut(s)	246, 562, 630, 661, 713, 869
Van91I	CCANNNNNTGG	1 cut(s)	464
VpaK11BI	GGWCC	3 cut(s)	70, 75, 455
XceI	RCATGY	1 cut(s)	577
XmiI	GTMKAC	1 cut(s)	545
XmnI	GAANNNNTTC	2 cut(s)	369, 963
XspI	CTAG	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.