Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006490

Physical Location & Seq

Genomic Coordinates Reverse (-)

6502507 .. 6504907

Gene Structure 2401 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006361

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGTTAACAGTCACAGCCAGCTCTCTCCCCATTCACACCACTTCCACAATCCAAAGGGCTCTCACTGTTCGCTCCGACGCATTCCCTTCTTTCCTTCCCAAAGAAGTCGAGAACATCAAAGACCCATTTGCCCGGAAACTCGCTACACGAATTGAAAGGCTTCCCGTTAGTTTTGGTGAGAATTGTGTGATGAGTAGCTGTGTGAAGCCGTTGGTACAGCGCGAGACGAGTCCCGTGGTTCTTCTCCATGGTTTTGATAGCTCCTGTTTAGAATGGAGATACACTTATCCATTGCTTGAGGAAGCTGGCCTCGAGACTTGGGCTGTTGACATTCTTGGTTGGGGTTTCTCTGATTTAGAAAGACTTCCCCCATGTAATGTGGCCTCGAAGCGTGACCATTTTTTTCAGCTTTGGAAGTCCTACATTAAAAAGCCAATGATATTGGTTGGACCAAGCCTCGGTGCTGCTGTTGCAATTGACTTTGCAGCCAGCTATCCAGAAGCAGTTGAAAGGCTAGTTTTGATTGATGCAAGTGTGTATACAGAAGGCACTGAAAATCAACCAACCTTGTCTAAAATGTTAGCCTATGCTGGAGCATATATATTGAAGAGTTTCCCTTTGCGCTTCTATGTAACCTTTTTGTGCTTCACTGGCATATCATTGAGTACCAGCCTAGATTGGACAAATATTGGCCGCTTGCATTGCCGGTTTCCTTGGTGGGAGGATGCACTTGTGGATTTCATGATGAGTGGGGTGTACAATGTTAGTGCCCAGATAGAACAGGTAAAGCAGAGGACACTCATCATATGGGGCGAGGAAGACCAGATCATTAGCAACAAGCTTGGAGTGAGATTGCACTCTGAACTGCCAGATGCAATTATACGACAAATACCAGATTGCGGACACATTCCTCATGTAGAAAGGCCAAGCTCTGTTGCGAAAATGATTCTGGAATTTGTTCGAGAAGCTCAGTACAAAGAGGTTGAATATAGTACTCAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

335

Amino Acids

37.84

Weight (kDa)

5.72

Isoelectric Point (pI)

41.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	78 - 208	2.2e-10	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	79 - 313	2.5e-15	Alpha/beta hydrolase family
Hydrolase_4	PF12146	79 - 182	7.3e-10	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13820
fragaria_vesca	FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_5g15690
malus_domestica	MD13G1063200.v1.1
prunus_persica	Prupe.1G286400_v2.0.a1 Prupe.1G286400_v2.0.a1
pyrus_communis	pycom13g05550
rosa_chinensis	RchiOBHm_Chr4g0438471
rosa_laevigata	RLG00000006361
rosa_multiflora	Rmu_sc0002327.1_g000021
rosa_roxburghii	Rroxscaffold_5G00379480
rosa_rugosa	Rorug04G0310100 Rorug04G0310100
rosa_samantha	Rh4AG360900 Rh4BG372200 Rh4CG386200 Rh4DG367000
rosa_wichuraiana	Rw0G006570 Rw0G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	539
AccII	CGCG	1 cut(s)	222
AciI	CCGC	2 cut(s)	694, 900
AcoI	YGGCCR	1 cut(s)	691
AcsI	RAATTY	1 cut(s)	953
AfaI	GTAC	5 cut(s)	216, 667, 758, 974, 994
AfiI	CCNNNNNNNGG	2 cut(s)	458, 899
AgsI	TTSAA	4 cut(s)	155, 509, 607, 986
AluBI	AGCT	9 cut(s)	21, 198, 261, 305, 409, 492, 841, 930, 968
AluI	AGCT	9 cut(s)	21, 198, 261, 305, 409, 492, 841, 930, 968
Alw26I	GTCTC	2 cut(s)	218, 308
Ama87I	CYCGRG	1 cut(s)	311
AoxI	GGCC	4 cut(s)	307, 381, 691, 923
ApeKI	GCWGC	2 cut(s)	464, 485
ApoI	RAATTY	1 cut(s)	953
Asp700I	GAANNNNTTC	4 cut(s)	159, 363, 611, 957
AspLEI	GCGC	2 cut(s)	222, 624
AspS9I	GGNCC	1 cut(s)	449
AsuC2I	CCSGG	1 cut(s)	133
AsuHPI	GGTGA	1 cut(s)	188
AvaI	CYCGRG	1 cut(s)	311
AvaII	GGWCC	1 cut(s)	449
BaeGI	GKGCMC	1 cut(s)	772
BanII	GRGCYC	1 cut(s)	61
BbsI	GAAGAC	1 cut(s)	825
BbvI	GCAGC	2 cut(s)	451, 497
BceAI	ACGGC	1 cut(s)	193
BcnI	CCSGG	1 cut(s)	133
BcoDI	GTCTC	2 cut(s)	218, 308
BfaI	CTAG	2 cut(s)	515, 674
BisI	GCNGC	3 cut(s)	465, 486, 694
BlsI	GCNGC	3 cut(s)	466, 487, 695
BmcAI	AGTACT	1 cut(s)	994
Bme1390I	CCNGG	1 cut(s)	133
Bme18I	GGWCC	1 cut(s)	449
BmeT110I	CYCGRG	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	449
BmrFI	CCNGG	1 cut(s)	133
BmsI	GCATC	3 cut(s)	517, 715, 862
BpiI	GAAGAC	1 cut(s)	825
BpmI	CTGGAG	1 cut(s)	612
BpuEI	CTTGAG	1 cut(s)	317
BpuMI	CCSGG	1 cut(s)	133
BsaJI	CCNNGG	4 cut(s)	234, 247, 457, 713
Bsc4I	CCNNNNNNNGG	2 cut(s)	458, 899
Bse118I	RCCGGY	1 cut(s)	705
Bse1I	ACTGG	1 cut(s)	655
Bse3DI	GCAATG	2 cut(s)	290, 700
BseDI	CCNNGG	4 cut(s)	234, 247, 457, 713
BseGI	GGATG	1 cut(s)	730
BseLI	CCNNNNNNNGG	2 cut(s)	458, 899
BseMI	GCAATG	2 cut(s)	290, 700
BseMII	CTCAG	1 cut(s)	983
BseNI	ACTGG	1 cut(s)	655
BseSI	GKGCMC	1 cut(s)	772
BseXI	GCAGC	2 cut(s)	451, 497
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	4 cut(s)	309, 383, 693, 925
BsiHKCI	CYCGRG	1 cut(s)	311
BsiSI	CCGG	2 cut(s)	133, 706
BslFI	GGGAC	1 cut(s)	216
BslI	CCNNNNNNNGG	2 cut(s)	458, 899
BsmAI	GTCTC	2 cut(s)	218, 308
BsmBI	CGTCTC	1 cut(s)	218
BsmFI	GGGAC	1 cut(s)	216
BsmI	GAATGC	1 cut(s)	80
BsnI	GGCC	4 cut(s)	309, 383, 693, 925
BsoBI	CYCGRG	1 cut(s)	311
Bsp1286I	GDGCHC	2 cut(s)	61, 772
Bsp1407I	TGTACA	1 cut(s)	756
Bsp143I	GATC	1 cut(s)	825
Bsp19I	CCATGG	1 cut(s)	247
BspACI	CCGC	2 cut(s)	694, 900
BspANI	GGCC	4 cut(s)	309, 383, 693, 925
BspCNI	CTCAG	1 cut(s)	982
BspFNI	CGCG	1 cut(s)	222
BspHI	TCATGA	1 cut(s)	741
BsrDI	GCAATG	2 cut(s)	290, 700
BsrFI	RCCGGY	1 cut(s)	705
BsrGI	TGTACA	1 cut(s)	756
BsrI	ACTGG	1 cut(s)	655
BssAI	RCCGGY	1 cut(s)	705
BssECI	CCNNGG	4 cut(s)	234, 247, 457, 713
BssMI	GATC	1 cut(s)	825
BssNAI	GTATAC	1 cut(s)	540
BssT1I	CCWWGG	2 cut(s)	247, 713
Bst1107I	GTATAC	1 cut(s)	540
Bst4CI	ACNGT	2 cut(s)	10, 67
Bst6I	CTCTTC	1 cut(s)	602
BstAUI	TGTACA	1 cut(s)	756
BstC8I	GCNNGC	4 cut(s)	19, 307, 490, 698
BstDEI	CTNAG	1 cut(s)	969
BstDSI	CCRYGG	2 cut(s)	234, 247
BstF5I	GGATG	1 cut(s)	730
BstFNI	CGCG	1 cut(s)	222
BstHHI	GCGC	2 cut(s)	222, 624
BstKTI	GATC	1 cut(s)	828
BstMAI	GTCTC	2 cut(s)	218, 308
BstMBI	GATC	1 cut(s)	825
BstMWI	GCNNNNNNNGC	3 cut(s)	470, 651, 702
BstSCI	CCNGG	1 cut(s)	131
BstSLI	GKGCMC	1 cut(s)	772
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	2 cut(s)	451, 497
BstV2I	GAAGAC	1 cut(s)	825
BstZ17I	GTATAC	1 cut(s)	540
BsuRI	GGCC	4 cut(s)	309, 383, 693, 925
BtgI	CCRYGG	2 cut(s)	234, 247
BtsCI	GGATG	1 cut(s)	730
BtsIMutI	CAGTG	3 cut(s)	63, 549, 648
Cac8I	GCNNGC	4 cut(s)	19, 307, 490, 698
CciI	TCATGA	1 cut(s)	741
CfoI	GCGC	2 cut(s)	222, 624
Cfr10I	RCCGGY	1 cut(s)	705
Cfr13I	GGNCC	1 cut(s)	449
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	5 cut(s)	215, 666, 757, 973, 993
CviAII	CATG	4 cut(s)	248, 372, 742, 914
CviQI	GTAC	5 cut(s)	215, 666, 757, 973, 993
DdeI	CTNAG	1 cut(s)	969
DpnI	GATC	1 cut(s)	827
DpnII	GATC	1 cut(s)	825
EaeI	YGGCCR	1 cut(s)	691
Eam1104I	CTCTTC	1 cut(s)	602
EarI	CTCTTC	1 cut(s)	602
Eco130I	CCWWGG	2 cut(s)	247, 713
Eco24I	GRGCYC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	449
Eco88I	CYCGRG	1 cut(s)	311
EcoT14I	CCWWGG	2 cut(s)	247, 713
EcoT38I	GRGCYC	1 cut(s)	61
ErhI	CCWWGG	2 cut(s)	247, 713
Esp3I	CGTCTC	1 cut(s)	218
FaeI	CATG	4 cut(s)	251, 375, 745, 917
FaqI	GGGAC	1 cut(s)	216
FatI	CATG	4 cut(s)	247, 371, 741, 913
FauNDI	CATATG	1 cut(s)	806
FblI	GTMKAC	1 cut(s)	539
Fnu4HI	GCNGC	3 cut(s)	465, 486, 694
FokI	GGATG	1 cut(s)	737
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	3 cut(s)	465, 486, 694
FspBI	CTAG	2 cut(s)	515, 674
GlaI	GCGC	2 cut(s)	221, 623
GluI	GCNGC	3 cut(s)	465, 486, 694
GsuI	CTGGAG	1 cut(s)	612
HaeIII	GGCC	4 cut(s)	309, 383, 693, 925
HapII	CCGG	2 cut(s)	133, 706
HgaI	GACGC	1 cut(s)	86
HhaI	GCGC	2 cut(s)	222, 624
Hin1II	CATG	4 cut(s)	251, 375, 745, 917
Hin6I	GCGC	2 cut(s)	220, 622
HinP1I	GCGC	2 cut(s)	220, 622
HincII	GTYRAC	2 cut(s)	6, 328
HindII	GTYRAC	2 cut(s)	6, 328
HindIII	AAGCTT	1 cut(s)	839
HinfI	GANTC	2 cut(s)	229, 946
HpaI	GTTAAC	1 cut(s)	6
HpaII	CCGG	2 cut(s)	133, 706
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	4 cut(s)	6, 328, 540, 757
Hpy188I	TCNGA	4 cut(s)	76, 352, 862, 1004
Hpy188III	TCNNGA	6 cut(s)	109, 313, 497, 742, 950, 962
Hpy8I	GTNNAC	4 cut(s)	6, 328, 540, 757
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	3 cut(s)	96, 104, 539
HpyCH4III	ACNGT	2 cut(s)	10, 67
HpyCH4V	TGCA	7 cut(s)	473, 485, 530, 700, 728, 856, 875
HpyF10VI	GCNNNNNNNGC	3 cut(s)	470, 651, 702
HpyF3I	CTNAG	1 cut(s)	969
Hsp92II	CATG	4 cut(s)	251, 375, 745, 917
HspAI	GCGC	2 cut(s)	220, 622
KspAI	GTTAAC	1 cut(s)	6
Kzo9I	GATC	1 cut(s)	825
LmnI	GCTCC	3 cut(s)	77, 266, 593
Lsp1109I	GCAGC	2 cut(s)	451, 497
LweI	GCATC	3 cut(s)	517, 715, 862
MaeI	CTAG	2 cut(s)	515, 674
MaeIII	GTNAC	3 cut(s)	10, 392, 631
MalI	GATC	1 cut(s)	827
MboI	GATC	1 cut(s)	825
MboII	GAAGA	3 cut(s)	233, 619, 830
MfeI	CAATTG	1 cut(s)	474
MhlI	GDGCHC	2 cut(s)	61, 772
MluCI	AATT	6 cut(s)	150, 181, 474, 876, 953, 998
MlyI	GAGTC	1 cut(s)	238
MmeI	TCCRAC	2 cut(s)	99, 427
MnlI	CCTC	9 cut(s)	292, 320, 394, 467, 715, 786, 808, 921, 973
MroXI	GAANNNNTTC	4 cut(s)	159, 363, 611, 957
MseI	TTAA	2 cut(s)	5, 426
MspI	CCGG	2 cut(s)	133, 706
MspR9I	CCNGG	1 cut(s)	133
MunI	CAATTG	1 cut(s)	474
Mva1269I	GAATGC	1 cut(s)	80
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	3 cut(s)	470, 651, 702
NciI	CCSGG	1 cut(s)	133
NcoI	CCATGG	1 cut(s)	247
NdeI	CATATG	1 cut(s)	806
NdeII	GATC	1 cut(s)	825
NlaIII	CATG	4 cut(s)	251, 375, 745, 917
NmuCI	GTSAC	2 cut(s)	10, 392
PaeR7I	CTCGAG	1 cut(s)	311
PagI	TCATGA	1 cut(s)	741
PctI	GAATGC	1 cut(s)	80
PdmI	GAANNNNTTC	4 cut(s)	159, 363, 611, 957
PfeI	GAWTC	1 cut(s)	946
PkrI	GCNGC	3 cut(s)	466, 487, 695
PleI	GAGTC	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	237
PspPI	GGNCC	1 cut(s)	449
RsaI	GTAC	5 cut(s)	216, 667, 758, 974, 994
RsaNI	GTAC	5 cut(s)	215, 666, 757, 973, 993
SaqAI	TTAA	2 cut(s)	5, 426
SatI	GCNGC	3 cut(s)	465, 486, 694
Sau3AI	GATC	1 cut(s)	825
Sau96I	GGNCC	1 cut(s)	449
ScaI	AGTACT	1 cut(s)	994
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	133
SduI	GDGCHC	2 cut(s)	61, 772
SfaNI	GCATC	3 cut(s)	517, 715, 862
Sfr274I	CTCGAG	1 cut(s)	311
SinI	GGWCC	1 cut(s)	449
SlaI	CTCGAG	1 cut(s)	311
SmlI	CTYRAG	2 cut(s)	296, 311
SmoI	CTYRAG	2 cut(s)	296, 311
Sse9I	AATT	6 cut(s)	150, 181, 474, 876, 953, 998
SsiI	CCGC	2 cut(s)	694, 900
SspI	AATATT	1 cut(s)	688
SspMI	CTAG	2 cut(s)	515, 674
StyD4I	CCNGG	1 cut(s)	131
StyI	CCWWGG	2 cut(s)	247, 713
TaaI	ACNGT	2 cut(s)	10, 67
TaqI	TCGA	4 cut(s)	108, 312, 386, 961
TasI	AATT	6 cut(s)	150, 181, 474, 876, 953, 998
TatI	WGTACW	3 cut(s)	756, 972, 992
TauI	GCSGC	1 cut(s)	696
TfiI	GAWTC	1 cut(s)	946
Tru1I	TTAA	2 cut(s)	5, 426
Tru9I	TTAA	2 cut(s)	5, 426
TscAI	CASTG	3 cut(s)	70, 556, 655
TseFI	GTSAC	2 cut(s)	10, 392
TseI	GCWGC	2 cut(s)	464, 485
Tsp45I	GTSAC	2 cut(s)	10, 392
TspDTI	ATGAA	1 cut(s)	730
TspRI	CASTG	3 cut(s)	70, 556, 655
VpaK11BI	GGWCC	1 cut(s)	449
XapI	RAATTY	1 cut(s)	953
XhoI	CTCGAG	1 cut(s)	311
XmiI	GTMKAC	1 cut(s)	539
XmnI	GAANNNNTTC	4 cut(s)	159, 363, 611, 957
XspI	CTAG	2 cut(s)	515, 674
ZrmI	AGTACT	1 cut(s)	994

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.