Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006490

Physical Location & Seq

Genomic Coordinates Forward (+)

3674195 .. 3678004

Gene Structure 3810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g05550.11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGCTAACTCTTACAGGAGGCTCCACACCCATTGCCGCGAAATGCACAATCCAAATCAAAAGGCGGTTCAGGGTTCGCTCCGCCGCTGCCGGGTTCCCTTCTTTCCTTCCCAAAGAGGTCGAAAAGATAAAAGACCCGTTTGCCCGCAAGCTCGCCGCCCGAATTGAAAGGCTACCCGTGAGTTTTGGAGAGAATAGTGTGATGAGTAGTTGTGTGAAGCCATTGGTGCGGAGCGAGACGAGTCCCGTGGTTCTTCTCCATGGTTTTGACAGCTCCTGTTTAGAATGGAGATATACTTATCCATTGCTCGAGGAAGCGGGATTGGAGACTTGGGCTGTGGACATTCTTGGTTGGGGTTTCTCCGATTTAGAAAGACTTCGCTCCTGCAATGTGGTCTCTAAGCGTGAGCATTTTTATCAGCTTTGGAAATCCTACATTAAGAGGCCAATGATATTGGTTGGACCAAGCCTTGGTGCTGCTGTTGTAATCGACTTTGCAGTCAGCCATCCAGAAGCTGTCGAAAGGCTGGTGTTGGTTGATGCAAGTGTGTACACAGAAGGCACGGGAAATCTAGCAACCATGCCTAAAATGTTAGCTTATGCTGGAGTGTATATACTGAAGAGTCTCCCGCTGCGCATCTATGCAAACTTTTTATGCTTCAGTGGCATATCACTTGCTACCAGTTTAGATTGGACTAATATTGGCCGCTTGCATTGTCTGTTTCCTTGGTGGGAGGACGCAGCTGTGGATTTCATGATGAGTGGGGGTTATAATGTTAGTGCCCAGATAGAACAGGTAAAGCAAAGGACGCTTATCATATGGGGTGAGGATGACCAGATTATTAGCAGCAAGCTTGGAGTGAGACTCCACTGCGAATTGCCAAATGCTATTTTACGACAAATACCAGAATGCGGACACCTTCCTCACGTGGAAAAGCCAAGCTCTGTTGCAAAGTTGATTGTGGAATTTGTTCAACAAGATCAGTACAAAGAAGTCCAATGTATTTCTCAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

339

Amino Acids

37.91

Weight (kDa)

8.03

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13820
fragaria_vesca	FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_5g15690
malus_domestica	MD13G1063200.v1.1
prunus_persica	Prupe.1G286400_v2.0.a1 Prupe.1G286400_v2.0.a1
pyrus_communis	pycom13g05550
rosa_chinensis	RchiOBHm_Chr4g0438471
rosa_laevigata	RLG00000006361
rosa_multiflora	Rmu_sc0002327.1_g000021
rosa_roxburghii	Rroxscaffold_5G00379480
rosa_rugosa	Rorug04G0310100 Rorug04G0310100
rosa_samantha	Rh4AG360900 Rh4BG372200 Rh4CG386200 Rh4DG367000
rosa_wichuraiana	Rw0G006570 Rw0G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	771
AasI	GACNNNNNNGTC	1 cut(s)	497
Acc16I	TGCGCA	1 cut(s)	635
AccB7I	CCANNNNNTGG	1 cut(s)	470
AccII	CGCG	1 cut(s)	38
AcoI	YGGCCR	1 cut(s)	703
AcsI	RAATTY	1 cut(s)	965
AcuI	CTGAAG	2 cut(s)	638, 643
AcvI	CACGTG	1 cut(s)	928
AfaI	GTAC	2 cut(s)	551, 986
AfiI	CCNNNNNNNGG	3 cut(s)	90, 470, 911
AgsI	TTSAA	2 cut(s)	167, 974
AluBI	AGCT	8 cut(s)	151, 273, 421, 515, 596, 743, 853, 942
AluI	AGCT	8 cut(s)	151, 273, 421, 515, 596, 743, 853, 942
Alw26I	GTCTC	5 cut(s)	230, 320, 400, 629, 856
AlwNI	CAGNNNCTG	2 cut(s)	276, 515
Ama87I	CYCGRG	1 cut(s)	308
AoxI	GGCC	2 cut(s)	443, 703
ApeKI	GCWGC	5 cut(s)	86, 476, 631, 740, 846
ApoI	RAATTY	1 cut(s)	965
Asp700I	GAANNNNTTC	2 cut(s)	375, 969
AspLEI	GCGC	1 cut(s)	636
AspS9I	GGNCC	1 cut(s)	461
AsuC2I	CCSGG	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	836
AvaI	CYCGRG	1 cut(s)	308
AvaII	GGWCC	1 cut(s)	461
BaeGI	GKGCMC	1 cut(s)	784
BbrPI	CACGTG	1 cut(s)	928
BbvI	GCAGC	5 cut(s)	73, 463, 618, 752, 858
BccI	CCATC	1 cut(s)	513
BcnI	CCSGG	1 cut(s)	91
BcoDI	GTCTC	5 cut(s)	230, 320, 400, 629, 856
BfaI	CTAG	1 cut(s)	572
BisI	GCNGC	9 cut(s)	36, 84, 87, 156, 477, 632, 706, 741, 847
BlsI	GCNGC	9 cut(s)	37, 85, 88, 157, 478, 633, 707, 742, 848
Bme1390I	CCNGG	1 cut(s)	91
Bme18I	GGWCC	1 cut(s)	461
BmeT110I	CYCGRG	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	461
BmiI	GGNNCC	2 cut(s)	22, 95
BmrFI	CCNGG	1 cut(s)	91
BmsI	GCATC	2 cut(s)	529, 645
BplI	GAGNNNNNCTC	2 cut(s)	849, 881
BpmI	CTGGAG	1 cut(s)	624
BpuMI	CCSGG	1 cut(s)	91
BsaAI	YACGTR	1 cut(s)	928
BsaI	GGTCTC	1 cut(s)	400
BsaJI	CCNNGG	4 cut(s)	246, 259, 469, 725
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 470, 911
Bse1I	ACTGG	1 cut(s)	681
Bse3DI	GCAATG	3 cut(s)	30, 302, 394
BseDI	CCNNGG	4 cut(s)	246, 259, 469, 725
BseGI	GGATG	2 cut(s)	505, 835
BseLI	CCNNNNNNNGG	3 cut(s)	90, 470, 911
BseMI	GCAATG	3 cut(s)	30, 302, 394
BseNI	ACTGG	1 cut(s)	681
BseSI	GKGCMC	1 cut(s)	784
BseXI	GCAGC	5 cut(s)	73, 463, 618, 752, 858
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	2 cut(s)	445, 705
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	1 cut(s)	90
BslFI	GGGAC	1 cut(s)	228
BslI	CCNNNNNNNGG	3 cut(s)	90, 470, 911
BsmAI	GTCTC	5 cut(s)	230, 320, 400, 629, 856
BsmBI	CGTCTC	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	228
BsmI	GAATGC	1 cut(s)	914
BsnI	GGCC	2 cut(s)	445, 705
Bso31I	GGTCTC	1 cut(s)	400
BsoBI	CYCGRG	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	784
Bsp1407I	TGTACA	1 cut(s)	549
Bsp143I	GATC	1 cut(s)	979
Bsp19I	CCATGG	1 cut(s)	259
BspANI	GGCC	2 cut(s)	445, 705
BspFNI	CGCG	1 cut(s)	38
BspHI	TCATGA	1 cut(s)	753
BspLI	GGNNCC	2 cut(s)	22, 95
BspTNI	GGTCTC	1 cut(s)	400
BsrDI	GCAATG	3 cut(s)	30, 302, 394
BsrGI	TGTACA	1 cut(s)	549
BsrI	ACTGG	1 cut(s)	681
BssECI	CCNNGG	4 cut(s)	246, 259, 469, 725
BssMI	GATC	1 cut(s)	979
BssT1I	CCWWGG	3 cut(s)	259, 469, 725
Bst6I	CTCTTC	1 cut(s)	614
BstAUI	TGTACA	1 cut(s)	549
BstBAI	YACGTR	1 cut(s)	928
BstC8I	GCNNGC	5 cut(s)	145, 149, 153, 710, 851
BstDEI	CTNAG	1 cut(s)	399
BstDSI	CCRYGG	2 cut(s)	246, 259
BstF5I	GGATG	2 cut(s)	505, 835
BstFNI	CGCG	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	636
BstKTI	GATC	1 cut(s)	982
BstMAI	GTCTC	5 cut(s)	230, 320, 400, 629, 856
BstMBI	GATC	1 cut(s)	979
BstMWI	GCNNNNNNNGC	3 cut(s)	226, 663, 808
BstSCI	CCNGG	1 cut(s)	89
BstSLI	GKGCMC	1 cut(s)	784
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	5 cut(s)	73, 463, 618, 752, 858
BsuRI	GGCC	2 cut(s)	445, 705
BtgI	CCRYGG	2 cut(s)	246, 259
BtsCI	GGATG	2 cut(s)	505, 835
BtsI	GCAGTG	1 cut(s)	868
BtsIMutI	CAGTG	2 cut(s)	667, 868
Cac8I	GCNNGC	5 cut(s)	145, 149, 153, 710, 851
CaiI	CAGNNNCTG	2 cut(s)	276, 515
CciI	TCATGA	1 cut(s)	753
CfoI	GCGC	1 cut(s)	636
Cfr13I	GGNCC	1 cut(s)	461
CseI	GACGC	2 cut(s)	746, 817
Csp6I	GTAC	2 cut(s)	550, 985
CspCI	CAANNNNNGTGG	2 cut(s)	13, 48
CviAII	CATG	3 cut(s)	260, 580, 754
CviQI	GTAC	2 cut(s)	550, 985
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	1 cut(s)	981
DpnII	GATC	1 cut(s)	979
DrdI	GACNNNNNNGTC	1 cut(s)	497
DseDI	GACNNNNNNGTC	1 cut(s)	497
EaeI	YGGCCR	1 cut(s)	703
Eam1104I	CTCTTC	1 cut(s)	614
EarI	CTCTTC	1 cut(s)	614
EciI	GGCGGA	1 cut(s)	70
Eco130I	CCWWGG	3 cut(s)	259, 469, 725
Eco31I	GGTCTC	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	461
Eco57I	CTGAAG	2 cut(s)	638, 643
Eco72I	CACGTG	1 cut(s)	928
Eco88I	CYCGRG	1 cut(s)	308
EcoT14I	CCWWGG	3 cut(s)	259, 469, 725
ErhI	CCWWGG	3 cut(s)	259, 469, 725
Esp3I	CGTCTC	1 cut(s)	230
FaeI	CATG	3 cut(s)	263, 583, 757
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	3 cut(s)	259, 579, 753
FauI	CCCGC	3 cut(s)	152, 310, 636
FauNDI	CATATG	1 cut(s)	818
Fnu4HI	GCNGC	9 cut(s)	36, 84, 87, 156, 477, 632, 706, 741, 847
FokI	GGATG	2 cut(s)	492, 842
Fsp4HI	GCNGC	9 cut(s)	36, 84, 87, 156, 477, 632, 706, 741, 847
FspBI	CTAG	1 cut(s)	572
FspI	TGCGCA	1 cut(s)	635
GlaI	GCGC	1 cut(s)	635
GluI	GCNGC	9 cut(s)	36, 84, 87, 156, 477, 632, 706, 741, 847
GsuI	CTGGAG	1 cut(s)	624
HaeIII	GGCC	2 cut(s)	445, 705
HapII	CCGG	1 cut(s)	90
HgaI	GACGC	2 cut(s)	746, 817
HhaI	GCGC	1 cut(s)	636
Hin1II	CATG	3 cut(s)	263, 583, 757
Hin6I	GCGC	1 cut(s)	634
HinP1I	GCGC	1 cut(s)	634
HindIII	AAGCTT	1 cut(s)	851
HinfI	GANTC	3 cut(s)	241, 622, 864
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	1 cut(s)	836
Hpy166II	GTNNAC	3 cut(s)	340, 550, 552
Hpy188I	TCNGA	1 cut(s)	364
Hpy188III	TCNNGA	2 cut(s)	509, 754
Hpy8I	GTNNAC	3 cut(s)	340, 550, 552
HpyAV	CCTTC	4 cut(s)	108, 116, 551, 929
HpyCH4IV	ACGT	1 cut(s)	927
HpyCH4V	TGCA	7 cut(s)	45, 387, 497, 542, 644, 712, 950
HpyF10VI	GCNNNNNNNGC	3 cut(s)	226, 663, 808
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	1 cut(s)	927
Hsp92II	CATG	3 cut(s)	263, 583, 757
HspAI	GCGC	1 cut(s)	634
Kzo9I	GATC	1 cut(s)	979
LmnI	GCTCC	5 cut(s)	26, 83, 231, 278, 386
Lsp1109I	GCAGC	5 cut(s)	73, 463, 618, 752, 858
LweI	GCATC	2 cut(s)	529, 645
MaeI	CTAG	1 cut(s)	572
MaeII	ACGT	1 cut(s)	927
MalI	GATC	1 cut(s)	981
MboI	GATC	1 cut(s)	979
MboII	GAAGA	2 cut(s)	245, 631
MhlI	GDGCHC	1 cut(s)	784
MluCI	AATT	4 cut(s)	162, 875, 965, 1010
MlyI	GAGTC	3 cut(s)	250, 631, 858
MmeI	TCCRAC	1 cut(s)	439
MnlI	CCTC	7 cut(s)	11, 109, 304, 435, 727, 820, 933
MroXI	GAANNNNTTC	2 cut(s)	375, 969
MseI	TTAA	1 cut(s)	438
MspA1I	CMGCKG	3 cut(s)	86, 631, 743
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	91
Mva1269I	GAATGC	1 cut(s)	914
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	3 cut(s)	226, 663, 808
NciI	CCSGG	1 cut(s)	91
NcoI	CCATGG	1 cut(s)	259
NdeI	CATATG	1 cut(s)	818
NdeII	GATC	1 cut(s)	979
NlaIII	CATG	3 cut(s)	263, 583, 757
NlaIV	GGNNCC	2 cut(s)	22, 95
NsbI	TGCGCA	1 cut(s)	635
PaeR7I	CTCGAG	1 cut(s)	308
PagI	TCATGA	1 cut(s)	753
PctI	GAATGC	1 cut(s)	914
PdmI	GAANNNNTTC	2 cut(s)	375, 969
PflMI	CCANNNNNTGG	1 cut(s)	470
PkrI	GCNGC	9 cut(s)	37, 85, 88, 157, 478, 633, 707, 742, 848
PleI	GAGTC	3 cut(s)	249, 630, 858
PmaCI	CACGTG	1 cut(s)	928
PmlI	CACGTG	1 cut(s)	928
PpsI	GAGTC	3 cut(s)	249, 630, 858
Ppu21I	YACGTR	1 cut(s)	928
PsiI	TTATAA	1 cut(s)	771
PspCI	CACGTG	1 cut(s)	928
PspN4I	GGNNCC	2 cut(s)	22, 95
PspPI	GGNCC	1 cut(s)	461
PspXI	VCTCGAGB	1 cut(s)	308
PstNI	CAGNNNCTG	2 cut(s)	276, 515
PvuII	CAGCTG	1 cut(s)	743
RsaI	GTAC	2 cut(s)	551, 986
RsaNI	GTAC	2 cut(s)	550, 985
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	9 cut(s)	36, 84, 87, 156, 477, 632, 706, 741, 847
Sau3AI	GATC	1 cut(s)	979
Sau96I	GGNCC	1 cut(s)	461
SchI	GAGTC	3 cut(s)	250, 631, 858
ScrFI	CCNGG	1 cut(s)	91
SduI	GDGCHC	1 cut(s)	784
SfaNI	GCATC	2 cut(s)	529, 645
Sfr274I	CTCGAG	1 cut(s)	308
SinI	GGWCC	1 cut(s)	461
SlaI	CTCGAG	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	4 cut(s)	162, 875, 965, 1010
SspI	AATATT	1 cut(s)	700
SspMI	CTAG	1 cut(s)	572
StyD4I	CCNGG	1 cut(s)	89
StyI	CCWWGG	3 cut(s)	259, 469, 725
TaiI	ACGT	1 cut(s)	930
TaqI	TCGA	4 cut(s)	120, 309, 489, 519
TasI	AATT	4 cut(s)	162, 875, 965, 1010
TatI	WGTACW	2 cut(s)	549, 984
TauI	GCSGC	4 cut(s)	38, 86, 158, 708
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	2 cut(s)	667, 875
TseI	GCWGC	5 cut(s)	86, 476, 631, 740, 846
TspDTI	ATGAA	1 cut(s)	742
TspRI	CASTG	2 cut(s)	667, 875
Van91I	CCANNNNNTGG	1 cut(s)	470
VpaK11BI	GGWCC	1 cut(s)	461
XapI	RAATTY	1 cut(s)	965
XhoI	CTCGAG	1 cut(s)	308
XmnI	GAANNNNTTC	2 cut(s)	375, 969
XspI	CTAG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.