Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0006490

Physical Location & Seq

Genomic Coordinates Forward (+)

58702340 .. 58705395

Gene Structure 3056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG367000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGATGTGGTGTGATTTTTGGGTTTCACTCTTCTTATTATTCAGCTCCTGTTTAGAATGGAGATACACTTATCCATTGCTTGAGGAAGCCGGCCTCGAGACTTGGGCTGTTGACATTCTTGGTTGGGGTTTCTCTGATTTAGAAAGACTCCCCCCATGTAATGTGGCCTCGAAGCGTGACCATTTTTTTCAGCTTTGGAAGTCCTACATTAAAAAGCCGATGATATTGGTTGGACCAAGCCTCGGTGCTGCTGTTGCAATTGACTTTGCAGCCAGCTATCCAGAAGCAGTTGAAAGGCTAGTTTTGATTGATGCAAGTGTGTATACAGAAGGCACTGAAAATCAACCAACCTTGTCTAAAATGTTAGCCTATGCTGGAGCATATATATTGAAGAGTTTCCCTTTGCGCTTCTATGTAACCTTTTTGTGCTTCACTGGTATATCATTGACTACCAGCCTAGATTGGACAAATATTGGCCGCTTGCATTGCTGGTTTCCTTGGTGGGAGGATGCACTTGTGGATTTCATGATGAGTGGGGTGTACAATGTTAGTGCCCAGATAGAACAGGTAAAGCAGAGGACACTTATCATATGGGGCGAGGAAGACCAGATCATTAGCAACAAGCTTGGAGTGAGATTGCACTCTGAACTGCCAGATGCAATTATACGACAAATACCAGATTGCGGACACATTCCTCATGTAGAAAGGCCGAGCTCTGTTGCGAAAATGATTCTGGAATTTGTTCGAGAAGCTCAGTACAAAGAGGTTGAATATAGTACTCAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

262

Amino Acids

30.19

Weight (kDa)

4.99

Isoelectric Point (pI)

35.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_6	PF12697	18 - 241	5e-12	Alpha/beta hydrolase family
Abhydrolase_1	PF00561	19 - 136	5.4e-07	alpha/beta hydrolase fold
Hydrolase_4	PF12146	27 - 110	8.1e-07	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13820
fragaria_vesca	FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_5g15690
malus_domestica	MD13G1063200.v1.1
prunus_persica	Prupe.1G286400_v2.0.a1 Prupe.1G286400_v2.0.a1
pyrus_communis	pycom13g05550
rosa_chinensis	RchiOBHm_Chr4g0438471
rosa_laevigata	RLG00000006361
rosa_multiflora	Rmu_sc0002327.1_g000021
rosa_roxburghii	Rroxscaffold_5G00379480
rosa_rugosa	Rorug04G0310100 Rorug04G0310100
rosa_samantha	Rh4AG360900 Rh4BG372200 Rh4CG386200 Rh4DG367000
rosa_wichuraiana	Rw0G006570 Rw0G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	323
AciI	CCGC	2 cut(s)	478, 684
AcoI	YGGCCR	1 cut(s)	475
AcsI	RAATTY	1 cut(s)	737
AfaI	GTAC	3 cut(s)	542, 758, 778
AfiI	CCNNNNNNNGG	2 cut(s)	242, 683
AgsI	TTSAA	3 cut(s)	293, 391, 770
AluBI	AGCT	6 cut(s)	45, 193, 276, 625, 714, 752
AluI	AGCT	6 cut(s)	45, 193, 276, 625, 714, 752
Alw21I	GWGCWC	1 cut(s)	716
Alw26I	GTCTC	1 cut(s)	92
AlwNI	CAGNNNCTG	1 cut(s)	48
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	4 cut(s)	91, 165, 475, 707
ApeKI	GCWGC	2 cut(s)	248, 269
ApoI	RAATTY	1 cut(s)	737
Asp700I	GAANNNNTTC	2 cut(s)	395, 741
AspLEI	GCGC	1 cut(s)	408
AspS9I	GGNCC	1 cut(s)	233
AvaI	CYCGRG	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	233
BaeGI	GKGCMC	1 cut(s)	556
BanII	GRGCYC	1 cut(s)	716
BbsI	GAAGAC	1 cut(s)	609
Bbv12I	GWGCWC	1 cut(s)	716
BbvI	GCAGC	2 cut(s)	235, 281
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	2 cut(s)	299, 458
BisI	GCNGC	3 cut(s)	249, 270, 478
BlsI	GCNGC	3 cut(s)	250, 271, 479
BmcAI	AGTACT	1 cut(s)	778
Bme18I	GGWCC	1 cut(s)	233
BmeT110I	CYCGRG	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	233
BmsI	GCATC	3 cut(s)	301, 499, 646
BpiI	GAAGAC	1 cut(s)	609
BpmI	CTGGAG	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	241, 497
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 683
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	1 cut(s)	439
Bse3DI	GCAATG	2 cut(s)	74, 484
BseDI	CCNNGG	2 cut(s)	241, 497
BseGI	GGATG	1 cut(s)	514
BseLI	CCNNNNNNNGG	2 cut(s)	242, 683
BseMI	GCAATG	2 cut(s)	74, 484
BseMII	CTCAG	1 cut(s)	767
BseNI	ACTGG	1 cut(s)	439
BseSI	GKGCMC	1 cut(s)	556
BseXI	GCAGC	2 cut(s)	235, 281
BshFI	GGCC	4 cut(s)	93, 167, 477, 709
BsiHKAI	GWGCWC	1 cut(s)	716
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	90
BslI	CCNNNNNNNGG	2 cut(s)	242, 683
BsmAI	GTCTC	1 cut(s)	92
BsnI	GGCC	4 cut(s)	93, 167, 477, 709
BsoBI	CYCGRG	1 cut(s)	95
Bsp1286I	GDGCHC	2 cut(s)	556, 716
Bsp1407I	TGTACA	1 cut(s)	540
Bsp143I	GATC	1 cut(s)	609
BspACI	CCGC	2 cut(s)	478, 684
BspANI	GGCC	4 cut(s)	93, 167, 477, 709
BspCNI	CTCAG	1 cut(s)	766
BspHI	TCATGA	1 cut(s)	525
BsrDI	GCAATG	2 cut(s)	74, 484
BsrFI	RCCGGY	1 cut(s)	89
BsrGI	TGTACA	1 cut(s)	540
BsrI	ACTGG	1 cut(s)	439
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	2 cut(s)	241, 497
BssMI	GATC	1 cut(s)	609
BssNAI	GTATAC	1 cut(s)	324
BssT1I	CCWWGG	1 cut(s)	497
Bst1107I	GTATAC	1 cut(s)	324
Bst6I	CTCTTC	2 cut(s)	35, 386
BstAUI	TGTACA	1 cut(s)	540
BstC8I	GCNNGC	3 cut(s)	91, 274, 482
BstDEI	CTNAG	1 cut(s)	753
BstF5I	GGATG	1 cut(s)	514
BstHHI	GCGC	1 cut(s)	408
BstKTI	GATC	1 cut(s)	612
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	609
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 486
BstSLI	GKGCMC	1 cut(s)	556
BstV1I	GCAGC	2 cut(s)	235, 281
BstV2I	GAAGAC	1 cut(s)	609
BstZ17I	GTATAC	1 cut(s)	324
BsuRI	GGCC	4 cut(s)	93, 167, 477, 709
BtsCI	GGATG	1 cut(s)	514
BtsIMutI	CAGTG	2 cut(s)	333, 432
Cac8I	GCNNGC	3 cut(s)	91, 274, 482
CaiI	CAGNNNCTG	1 cut(s)	48
CciI	TCATGA	1 cut(s)	525
CfoI	GCGC	1 cut(s)	408
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	233
Csp6I	GTAC	3 cut(s)	541, 757, 777
CviAII	CATG	3 cut(s)	156, 526, 698
CviQI	GTAC	3 cut(s)	541, 757, 777
DdeI	CTNAG	1 cut(s)	753
DpnI	GATC	1 cut(s)	611
DpnII	GATC	1 cut(s)	609
EaeI	YGGCCR	1 cut(s)	475
Eam1104I	CTCTTC	2 cut(s)	35, 386
EarI	CTCTTC	2 cut(s)	35, 386
Ecl136II	GAGCTC	1 cut(s)	714
Eco130I	CCWWGG	1 cut(s)	497
Eco24I	GRGCYC	1 cut(s)	716
Eco47I	GGWCC	1 cut(s)	233
Eco53kI	GAGCTC	1 cut(s)	714
Eco88I	CYCGRG	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	714
EcoT14I	CCWWGG	1 cut(s)	497
EcoT38I	GRGCYC	1 cut(s)	716
ErhI	CCWWGG	1 cut(s)	497
FaeI	CATG	3 cut(s)	159, 529, 701
FatI	CATG	3 cut(s)	155, 525, 697
FauNDI	CATATG	1 cut(s)	590
FblI	GTMKAC	1 cut(s)	323
Fnu4HI	GCNGC	3 cut(s)	249, 270, 478
FokI	GGATG	1 cut(s)	521
FriOI	GRGCYC	1 cut(s)	716
Fsp4HI	GCNGC	3 cut(s)	249, 270, 478
FspBI	CTAG	2 cut(s)	299, 458
GlaI	GCGC	1 cut(s)	407
GluI	GCNGC	3 cut(s)	249, 270, 478
GsuI	CTGGAG	1 cut(s)	396
HaeIII	GGCC	4 cut(s)	93, 167, 477, 709
HapII	CCGG	1 cut(s)	90
HhaI	GCGC	1 cut(s)	408
Hin1II	CATG	3 cut(s)	159, 529, 701
Hin6I	GCGC	1 cut(s)	406
HinP1I	GCGC	1 cut(s)	406
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	2 cut(s)	147, 730
HpaII	CCGG	1 cut(s)	90
Hpy166II	GTNNAC	3 cut(s)	112, 324, 541
Hpy188I	TCNGA	3 cut(s)	136, 646, 788
Hpy188III	TCNNGA	5 cut(s)	97, 281, 526, 734, 746
Hpy8I	GTNNAC	3 cut(s)	112, 324, 541
HpyAV	CCTTC	1 cut(s)	323
HpyCH4V	TGCA	7 cut(s)	257, 269, 314, 484, 512, 640, 659
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 486
HpyF3I	CTNAG	1 cut(s)	753
Hsp92II	CATG	3 cut(s)	159, 529, 701
HspAI	GCGC	1 cut(s)	406
KroI	GCCGGC	1 cut(s)	89
KroNI	GCCGGC	1 cut(s)	91
Kzo9I	GATC	1 cut(s)	609
LmnI	GCTCC	2 cut(s)	50, 377
Lsp1109I	GCAGC	2 cut(s)	235, 281
LweI	GCATC	3 cut(s)	301, 499, 646
MaeI	CTAG	2 cut(s)	299, 458
MaeIII	GTNAC	2 cut(s)	176, 415
MalI	GATC	1 cut(s)	611
MboI	GATC	1 cut(s)	609
MboII	GAAGA	3 cut(s)	22, 403, 614
MfeI	CAATTG	1 cut(s)	258
MhlI	GDGCHC	2 cut(s)	556, 716
MluCI	AATT	4 cut(s)	258, 660, 737, 782
MlyI	GAGTC	1 cut(s)	141
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	9 cut(s)	76, 104, 178, 251, 499, 570, 592, 705, 757
MroNI	GCCGGC	1 cut(s)	89
MroXI	GAANNNNTTC	2 cut(s)	395, 741
MseI	TTAA	1 cut(s)	210
MspI	CCGG	1 cut(s)	90
MunI	CAATTG	1 cut(s)	258
MwoI	GCNNNNNNNGC	2 cut(s)	254, 486
NaeI	GCCGGC	1 cut(s)	91
NdeI	CATATG	1 cut(s)	590
NdeII	GATC	1 cut(s)	609
NgoMIV	GCCGGC	1 cut(s)	89
NlaIII	CATG	3 cut(s)	159, 529, 701
NmeAIII	GCCGAG	1 cut(s)	735
NmuCI	GTSAC	1 cut(s)	176
PaeR7I	CTCGAG	1 cut(s)	95
PagI	TCATGA	1 cut(s)	525
PdiI	GCCGGC	1 cut(s)	91
PdmI	GAANNNNTTC	2 cut(s)	395, 741
PfeI	GAWTC	1 cut(s)	730
PkrI	GCNGC	3 cut(s)	250, 271, 479
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
Psp124BI	GAGCTC	1 cut(s)	716
PspPI	GGNCC	1 cut(s)	233
PstNI	CAGNNNCTG	1 cut(s)	48
RsaI	GTAC	3 cut(s)	542, 758, 778
RsaNI	GTAC	3 cut(s)	541, 757, 777
SacI	GAGCTC	1 cut(s)	716
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	3 cut(s)	249, 270, 478
Sau3AI	GATC	1 cut(s)	609
Sau96I	GGNCC	1 cut(s)	233
ScaI	AGTACT	1 cut(s)	778
SchI	GAGTC	1 cut(s)	141
SduI	GDGCHC	2 cut(s)	556, 716
SfaNI	GCATC	3 cut(s)	301, 499, 646
Sfr274I	CTCGAG	1 cut(s)	95
SinI	GGWCC	1 cut(s)	233
SlaI	CTCGAG	1 cut(s)	95
SmlI	CTYRAG	2 cut(s)	80, 95
SmoI	CTYRAG	2 cut(s)	80, 95
Sse9I	AATT	4 cut(s)	258, 660, 737, 782
SsiI	CCGC	2 cut(s)	478, 684
SspI	AATATT	1 cut(s)	472
SspMI	CTAG	2 cut(s)	299, 458
SstI	GAGCTC	1 cut(s)	716
StyI	CCWWGG	1 cut(s)	497
TaqI	TCGA	3 cut(s)	96, 170, 745
TasI	AATT	4 cut(s)	258, 660, 737, 782
TatI	WGTACW	3 cut(s)	540, 756, 776
TauI	GCSGC	1 cut(s)	480
TfiI	GAWTC	1 cut(s)	730
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	2 cut(s)	340, 439
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	2 cut(s)	248, 269
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	1 cut(s)	514
TspRI	CASTG	2 cut(s)	340, 439
VpaK11BI	GGWCC	1 cut(s)	233
XapI	RAATTY	1 cut(s)	737
XhoI	CTCGAG	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	323
XmnI	GAANNNNTTC	2 cut(s)	395, 741
XspI	CTAG	2 cut(s)	299, 458
ZrmI	AGTACT	1 cut(s)	778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.