Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006490

Physical Location & Seq

Genomic Coordinates Forward (+)

59840915 .. 59843529

Gene Structure 2615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00379480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGTTAACACTCACAGCCAGCTCGCTCCCCATTCACACCGCCTCCACAGTCCAAAGGGGTCTCACTGTTCGCTCCGATGCATTCCCTTCTTTCCTTCCCAAAGAGGTCGAGAACATCAAAGACCCATTTGCCCGGAAACTCGCTACACGAATCGAAAGGCTTCCCGTTAGTTTTGGCGAGAATTGTGTTATGAGTAGCTGTGTGAAGCCGTTGGTTCGGAGCGAGACGAGTCCGGTGGTTCTTCTCCATGGTTTTGACAGCTCCTGTTTGGAATGGAGATACACTTATCCATTACTTGAGGAAGCTGGCCTTGAGACTTGGGCTGTTGACATTCTTGGTTGGGGTTTCTCTGATTTAGAAAGACTTCCCCCATGTAATGTGGCCTCGAAGCGTGACCATTTTTTTCAGCTTTGGAAGTCCTACATTAAAAAGCCAATGATATTGGTTGGACCAAGCCTCGGTGCTGCTGTTGCAATTGACTTTGCAGCCAGCTATCCAGAAGCAGTTGAAAGGCTAGTTTTGATTGATGCAAGTGTGTATACAGAAGGCACCGAAAATCAACCAACCTTGTCTAAAATGTTAGCCTATGCTGGAGCATATATATTGAAGAGTTTCCCTTTGCGCTTCTATGTAACCTTTTTGTGCTTCACTGGCATATCATTGAGTACCAGCCTAGATTGGACAAATATTGGCCGCTTGCATTGCCGGTTTCCTTGGTGGGAGGATGCACTTGTGGATTTCATGATGAGTGGGGTGTACAATGTTAGTGCCCAGATAGAACAGGTAAAGCAGAGGACACTTATCATATGGGGCGAGGAAGACCAGATCATTAGCAACAAGCTTGGAGTGAGATTGCACTCTGAACTGCCAGATGCAATTATACGACAAATACCAGATTGCGGACACATTCCTCATGTAGAAAGGCCAAGCTCTGTTGCGAAAATGATTTTGGAATTTGTTCGAGAAGCTCAGTGCAAACAGGTTGAATATAGTACTCAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

334

Amino Acids

37.69

Weight (kDa)

5.86

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	78 - 208	2.2e-10	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	79 - 313	2.5e-15	Alpha/beta hydrolase family
Hydrolase_4	PF12146	79 - 182	8.2e-10	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13820
fragaria_vesca	FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_5g15690
malus_domestica	MD13G1063200.v1.1
prunus_persica	Prupe.1G286400_v2.0.a1 Prupe.1G286400_v2.0.a1
pyrus_communis	pycom13g05550
rosa_chinensis	RchiOBHm_Chr4g0438471
rosa_laevigata	RLG00000006361
rosa_multiflora	Rmu_sc0002327.1_g000021
rosa_roxburghii	Rroxscaffold_5G00379480
rosa_rugosa	Rorug04G0310100 Rorug04G0310100
rosa_samantha	Rh4AG360900 Rh4BG372200 Rh4CG386200 Rh4DG367000
rosa_wichuraiana	Rw0G006570 Rw0G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	548
AccI	GTMKAC	1 cut(s)	539
AciI	CCGC	3 cut(s)	39, 694, 900
AcoI	YGGCCR	1 cut(s)	691
AcsI	RAATTY	1 cut(s)	953
AfaI	GTAC	3 cut(s)	667, 758, 994
AfiI	CCNNNNNNNGG	2 cut(s)	458, 899
AgsI	TTSAA	3 cut(s)	509, 607, 986
AjuI	GAANNNNNNNTTGG	2 cut(s)	932, 964
AluBI	AGCT	9 cut(s)	21, 198, 261, 305, 409, 492, 841, 930, 968
AluI	AGCT	9 cut(s)	21, 198, 261, 305, 409, 492, 841, 930, 968
Alw26I	GTCTC	3 cut(s)	65, 218, 308
AlwNI	CAGNNNCTG	1 cut(s)	264
AoxI	GGCC	4 cut(s)	307, 381, 691, 923
ApeKI	GCWGC	2 cut(s)	464, 485
ApoI	RAATTY	1 cut(s)	953
Asp700I	GAANNNNTTC	4 cut(s)	159, 363, 611, 957
AspLEI	GCGC	1 cut(s)	624
AspS9I	GGNCC	1 cut(s)	449
AsuC2I	CCSGG	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	449
BaeGI	GKGCMC	1 cut(s)	772
BanI	GGYRCC	1 cut(s)	548
BbsI	GAAGAC	1 cut(s)	825
BbvI	GCAGC	2 cut(s)	451, 497
BceAI	ACGGC	1 cut(s)	193
BcnI	CCSGG	1 cut(s)	133
BcoDI	GTCTC	3 cut(s)	65, 218, 308
BfaI	CTAG	2 cut(s)	515, 674
BisI	GCNGC	3 cut(s)	465, 486, 694
BlsI	GCNGC	3 cut(s)	466, 487, 695
BmcAI	AGTACT	1 cut(s)	994
Bme1390I	CCNGG	1 cut(s)	133
Bme18I	GGWCC	1 cut(s)	449
BmgT120I	GGNCC	1 cut(s)	449
BmiI	GGNNCC	1 cut(s)	550
BmrFI	CCNGG	1 cut(s)	133
BmsI	GCATC	4 cut(s)	67, 517, 715, 862
BpiI	GAAGAC	1 cut(s)	825
BpmI	CTGGAG	1 cut(s)	612
BpuEI	CTTGAG	2 cut(s)	317, 332
BpuMI	CCSGG	1 cut(s)	133
BsaI	GGTCTC	1 cut(s)	65
BsaJI	CCNNGG	3 cut(s)	247, 457, 713
BsaWI	WCCGGW	1 cut(s)	232
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	2 cut(s)	458, 899
Bse118I	RCCGGY	1 cut(s)	705
Bse1I	ACTGG	1 cut(s)	655
Bse3DI	GCAATG	1 cut(s)	700
BseDI	CCNNGG	3 cut(s)	247, 457, 713
BseGI	GGATG	1 cut(s)	730
BseLI	CCNNNNNNNGG	2 cut(s)	458, 899
BseMI	GCAATG	1 cut(s)	700
BseMII	CTCAG	1 cut(s)	983
BseNI	ACTGG	1 cut(s)	655
BseSI	GKGCMC	1 cut(s)	772
BseXI	GCAGC	2 cut(s)	451, 497
BshFI	GGCC	4 cut(s)	309, 383, 693, 925
BshNI	GGYRCC	1 cut(s)	548
BsiSI	CCGG	3 cut(s)	133, 233, 706
BslI	CCNNNNNNNGG	2 cut(s)	458, 899
BsmAI	GTCTC	3 cut(s)	65, 218, 308
BsmBI	CGTCTC	1 cut(s)	218
BsmI	GAATGC	1 cut(s)	80
BsnI	GGCC	4 cut(s)	309, 383, 693, 925
Bso31I	GGTCTC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	772
Bsp1407I	TGTACA	1 cut(s)	756
Bsp143I	GATC	1 cut(s)	825
Bsp19I	CCATGG	1 cut(s)	247
BspACI	CCGC	3 cut(s)	39, 694, 900
BspANI	GGCC	4 cut(s)	309, 383, 693, 925
BspCNI	CTCAG	1 cut(s)	982
BspHI	TCATGA	1 cut(s)	741
BspLI	GGNNCC	1 cut(s)	550
BspT107I	GGYRCC	1 cut(s)	548
BspTNI	GGTCTC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	700
BsrFI	RCCGGY	1 cut(s)	705
BsrGI	TGTACA	1 cut(s)	756
BsrI	ACTGG	1 cut(s)	655
BssAI	RCCGGY	1 cut(s)	705
BssECI	CCNNGG	3 cut(s)	247, 457, 713
BssMI	GATC	1 cut(s)	825
BssNAI	GTATAC	1 cut(s)	540
BssT1I	CCWWGG	2 cut(s)	247, 713
Bst1107I	GTATAC	1 cut(s)	540
Bst4CI	ACNGT	2 cut(s)	49, 67
Bst6I	CTCTTC	1 cut(s)	602
BstAUI	TGTACA	1 cut(s)	756
BstC8I	GCNNGC	5 cut(s)	19, 23, 307, 490, 698
BstDEI	CTNAG	1 cut(s)	969
BstDSI	CCRYGG	1 cut(s)	247
BstF5I	GGATG	1 cut(s)	730
BstHHI	GCGC	1 cut(s)	624
BstKTI	GATC	1 cut(s)	828
BstMAI	GTCTC	3 cut(s)	65, 218, 308
BstMBI	GATC	1 cut(s)	825
BstMWI	GCNNNNNNNGC	3 cut(s)	470, 651, 702
BstSCI	CCNGG	1 cut(s)	131
BstSLI	GKGCMC	1 cut(s)	772
BstV1I	GCAGC	2 cut(s)	451, 497
BstV2I	GAAGAC	1 cut(s)	825
BstZ17I	GTATAC	1 cut(s)	540
BsuRI	GGCC	4 cut(s)	309, 383, 693, 925
BtgI	CCRYGG	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	730
BtsIMutI	CAGTG	3 cut(s)	63, 648, 977
Cac8I	GCNNGC	5 cut(s)	19, 23, 307, 490, 698
CaiI	CAGNNNCTG	1 cut(s)	264
CciI	TCATGA	1 cut(s)	741
CfoI	GCGC	1 cut(s)	624
Cfr10I	RCCGGY	1 cut(s)	705
Cfr13I	GGNCC	1 cut(s)	449
Csp6I	GTAC	3 cut(s)	666, 757, 993
CviAII	CATG	4 cut(s)	248, 372, 742, 914
CviQI	GTAC	3 cut(s)	666, 757, 993
DdeI	CTNAG	1 cut(s)	969
DpnI	GATC	1 cut(s)	827
DpnII	GATC	1 cut(s)	825
EaeI	YGGCCR	1 cut(s)	691
Eam1104I	CTCTTC	1 cut(s)	602
EarI	CTCTTC	1 cut(s)	602
Eco130I	CCWWGG	2 cut(s)	247, 713
Eco31I	GGTCTC	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	449
EcoT14I	CCWWGG	2 cut(s)	247, 713
EcoT22I	ATGCAT	1 cut(s)	82
ErhI	CCWWGG	2 cut(s)	247, 713
Esp3I	CGTCTC	1 cut(s)	218
FaeI	CATG	4 cut(s)	251, 375, 745, 917
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FatI	CATG	4 cut(s)	247, 371, 741, 913
FauNDI	CATATG	1 cut(s)	806
FblI	GTMKAC	1 cut(s)	539
Fnu4HI	GCNGC	3 cut(s)	465, 486, 694
FokI	GGATG	1 cut(s)	737
Fsp4HI	GCNGC	3 cut(s)	465, 486, 694
FspBI	CTAG	2 cut(s)	515, 674
GlaI	GCGC	1 cut(s)	623
GluI	GCNGC	3 cut(s)	465, 486, 694
GsuI	CTGGAG	1 cut(s)	612
HaeIII	GGCC	4 cut(s)	309, 383, 693, 925
HapII	CCGG	3 cut(s)	133, 233, 706
HhaI	GCGC	1 cut(s)	624
Hin1II	CATG	4 cut(s)	251, 375, 745, 917
Hin6I	GCGC	1 cut(s)	622
HinP1I	GCGC	1 cut(s)	622
HincII	GTYRAC	2 cut(s)	6, 328
HindII	GTYRAC	2 cut(s)	6, 328
HindIII	AAGCTT	1 cut(s)	839
HinfI	GANTC	2 cut(s)	150, 229
HpaI	GTTAAC	1 cut(s)	6
HpaII	CCGG	3 cut(s)	133, 233, 706
Hpy166II	GTNNAC	4 cut(s)	6, 328, 540, 757
Hpy188I	TCNGA	5 cut(s)	76, 219, 352, 862, 1004
Hpy188III	TCNNGA	4 cut(s)	109, 497, 742, 962
Hpy8I	GTNNAC	4 cut(s)	6, 328, 540, 757
HpyAV	CCTTC	3 cut(s)	96, 104, 539
HpyCH4III	ACNGT	2 cut(s)	49, 67
HpyCH4V	TGCA	9 cut(s)	80, 473, 485, 530, 700, 728, 856, 875, 975
HpyF10VI	GCNNNNNNNGC	3 cut(s)	470, 651, 702
HpyF3I	CTNAG	1 cut(s)	969
Hsp92II	CATG	4 cut(s)	251, 375, 745, 917
HspAI	GCGC	1 cut(s)	622
KspAI	GTTAAC	1 cut(s)	6
Kzo9I	GATC	1 cut(s)	825
LmnI	GCTCC	5 cut(s)	30, 77, 219, 266, 593
Lsp1109I	GCAGC	2 cut(s)	451, 497
LweI	GCATC	4 cut(s)	67, 517, 715, 862
MaeI	CTAG	2 cut(s)	515, 674
MaeIII	GTNAC	2 cut(s)	392, 631
MalI	GATC	1 cut(s)	827
MboI	GATC	1 cut(s)	825
MboII	GAAGA	3 cut(s)	233, 619, 830
MfeI	CAATTG	1 cut(s)	474
MhlI	GDGCHC	1 cut(s)	772
MluCI	AATT	5 cut(s)	181, 474, 876, 953, 998
MlyI	GAGTC	1 cut(s)	238
MmeI	TCCRAC	1 cut(s)	427
MnlI	CCTC	9 cut(s)	52, 97, 292, 394, 467, 715, 786, 808, 921
Mph1103I	ATGCAT	1 cut(s)	82
MroXI	GAANNNNTTC	4 cut(s)	159, 363, 611, 957
MseI	TTAA	2 cut(s)	5, 426
MspI	CCGG	3 cut(s)	133, 233, 706
MspR9I	CCNGG	1 cut(s)	133
MunI	CAATTG	1 cut(s)	474
Mva1269I	GAATGC	1 cut(s)	80
MwoI	GCNNNNNNNGC	3 cut(s)	470, 651, 702
NciI	CCSGG	1 cut(s)	133
NcoI	CCATGG	1 cut(s)	247
NdeI	CATATG	1 cut(s)	806
NdeII	GATC	1 cut(s)	825
NlaIII	CATG	4 cut(s)	251, 375, 745, 917
NlaIV	GGNNCC	1 cut(s)	550
NmuCI	GTSAC	1 cut(s)	392
NsiI	ATGCAT	1 cut(s)	82
PagI	TCATGA	1 cut(s)	741
PctI	GAATGC	1 cut(s)	80
PdmI	GAANNNNTTC	4 cut(s)	159, 363, 611, 957
PfeI	GAWTC	1 cut(s)	150
PkrI	GCNGC	3 cut(s)	466, 487, 695
PleI	GAGTC	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	550
PspPI	GGNCC	1 cut(s)	449
PstNI	CAGNNNCTG	1 cut(s)	264
RsaI	GTAC	3 cut(s)	667, 758, 994
RsaNI	GTAC	3 cut(s)	666, 757, 993
SaqAI	TTAA	2 cut(s)	5, 426
SatI	GCNGC	3 cut(s)	465, 486, 694
Sau3AI	GATC	1 cut(s)	825
Sau96I	GGNCC	1 cut(s)	449
ScaI	AGTACT	1 cut(s)	994
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	772
SfaNI	GCATC	4 cut(s)	67, 517, 715, 862
SinI	GGWCC	1 cut(s)	449
SmlI	CTYRAG	2 cut(s)	296, 311
SmoI	CTYRAG	2 cut(s)	296, 311
Sse9I	AATT	5 cut(s)	181, 474, 876, 953, 998
SsiI	CCGC	3 cut(s)	39, 694, 900
SspI	AATATT	1 cut(s)	688
SspMI	CTAG	2 cut(s)	515, 674
StyD4I	CCNGG	1 cut(s)	131
StyI	CCWWGG	2 cut(s)	247, 713
TaaI	ACNGT	2 cut(s)	49, 67
TaqI	TCGA	4 cut(s)	108, 153, 386, 961
TasI	AATT	5 cut(s)	181, 474, 876, 953, 998
TatI	WGTACW	2 cut(s)	756, 992
TauI	GCSGC	1 cut(s)	696
TfiI	GAWTC	1 cut(s)	150
Tru1I	TTAA	2 cut(s)	5, 426
Tru9I	TTAA	2 cut(s)	5, 426
TscAI	CASTG	3 cut(s)	70, 655, 977
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	2 cut(s)	464, 485
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	1 cut(s)	730
TspRI	CASTG	3 cut(s)	70, 655, 977
VpaK11BI	GGWCC	1 cut(s)	449
XapI	RAATTY	1 cut(s)	953
XmiI	GTMKAC	1 cut(s)	539
XmnI	GAANNNNTTC	4 cut(s)	159, 363, 611, 957
XspI	CTAG	2 cut(s)	515, 674
ZrmI	AGTACT	1 cut(s)	994
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.