Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0006490

Physical Location & Seq

Genomic Coordinates Forward (+)

4378948 .. 4382499

Gene Structure 3552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1063200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGCTAACTCTCACAGGCGGCTCCACACCCATTGCCGCGAAATGCACGGTCCAAATCAAAAGGCGGTTCAGGGTTCCCTCCGCCGCTGCCGGGTTCCCTTCTTTCCTTCCCAAAGAGGTCGAAAAGATCAAAGACCCGTTTGCCCGCAAGCTCGCCGCCCGAATTGAAAGGCTACCCGTGAGTTTTGGAGAGAATAGTGTGATGAGTAGTTGTGTGAAGCCATTAGTGCAGAGCGAGACGAGTCCCGTGGTTCTTCTCCATGGTTTTGACAGCTCCTGTTTAGAATGGAGATATACTTATCCATTGCTCGAGGAAGCGGGATTGGAGACTTGGGCTGTTGACATTCTTGGTTGGGGTTTCTCCGATTTAGAAAGACTTCCCTCCTGCAATGTGGTCTCTAAGCGTGAGCATTTTTTTCAGCTTTGGAAATCCTACATTAAGAGGCCAATGATATTGGTTGGACCAAGCCTTGGTGCTGCTGTTGCAATTGACTTTGCAGTCAGCCATCCAGAAGCGGTCGAAAGGCTGGTGTTGGTTGATGCAAGTGTGTATACAGAAGGCACGGGAAATCTAGCAACCATGCCTAAAATGTTAGCCTATGCTGGAGTGTATATACTGAAGAGTCTCCCACTGCGCATCTATGCAAACTTTTTGAGCTTCAGTGGCATATCACTTGCTACCAGTTTAGATTGGGCTAATATTGGCCGCTTGCATTGTCTGTTTCCTTGGTGGGAGGATGCAGCTGTGGATTTCATGATGAGTGGGGGTTATAATGTTAGTGCCCAGATAGAACAGGTAAAGCAAAGGACGCTTATCATATGGGGTGAGGATGACCAGATTATTAGCAGCAAGCTTGGAGTGAGATTGCACTGCGAATTGCCAAATGCTATTTTACGACAAATACCAGAATGCGGACACCTTCCTCACGTGGAAAAGCCAAGCTCAGCTGCTAAGTTGGTTGTGGAATTTGTTCAACAAGATCAGTACAAAGAAGTCCAATGCATTGCTCAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

339

Amino Acids

37.56

Weight (kDa)

6.66

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	82 - 201	2.3e-08	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	83 - 313	1.2e-14	Alpha/beta hydrolase family
Hydrolase_4	PF12146	83 - 185	1.1e-09	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13820
fragaria_vesca	FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_5g15690
malus_domestica	MD13G1063200.v1.1
prunus_persica	Prupe.1G286400_v2.0.a1 Prupe.1G286400_v2.0.a1
pyrus_communis	pycom13g05550
rosa_chinensis	RchiOBHm_Chr4g0438471
rosa_laevigata	RLG00000006361
rosa_multiflora	Rmu_sc0002327.1_g000021
rosa_roxburghii	Rroxscaffold_5G00379480
rosa_rugosa	Rorug04G0310100 Rorug04G0310100
rosa_samantha	Rh4AG360900 Rh4BG372200 Rh4CG386200 Rh4DG367000
rosa_wichuraiana	Rw0G006570 Rw0G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	771
AasI	GACNNNNNNGTC	1 cut(s)	497
Acc16I	TGCGCA	1 cut(s)	635
AccB7I	CCANNNNNTGG	1 cut(s)	470
AccI	GTMKAC	1 cut(s)	551
AccII	CGCG	1 cut(s)	38
AcoI	YGGCCR	1 cut(s)	703
AcsI	RAATTY	1 cut(s)	965
AcuI	CTGAAG	2 cut(s)	638, 643
AcvI	CACGTG	1 cut(s)	928
AfaI	GTAC	1 cut(s)	986
AfiI	CCNNNNNNNGG	3 cut(s)	90, 470, 911
AgsI	TTSAA	2 cut(s)	167, 974
AluBI	AGCT	8 cut(s)	151, 273, 421, 657, 743, 853, 942, 947
AluI	AGCT	8 cut(s)	151, 273, 421, 657, 743, 853, 942, 947
Alw26I	GTCTC	4 cut(s)	230, 320, 400, 629
AlwNI	CAGNNNCTG	1 cut(s)	276
Ama87I	CYCGRG	1 cut(s)	308
AoxI	GGCC	2 cut(s)	443, 703
ApeKI	GCWGC	5 cut(s)	86, 476, 740, 846, 947
ApoI	RAATTY	1 cut(s)	965
Asp700I	GAANNNNTTC	2 cut(s)	375, 969
AspLEI	GCGC	1 cut(s)	636
AspS9I	GGNCC	2 cut(s)	49, 461
AsuC2I	CCSGG	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	836
AvaI	CYCGRG	1 cut(s)	308
AvaII	GGWCC	2 cut(s)	49, 461
BaeGI	GKGCMC	1 cut(s)	784
BbrPI	CACGTG	1 cut(s)	928
BbvI	GCAGC	5 cut(s)	73, 463, 752, 858, 934
BccI	CCATC	1 cut(s)	513
BcnI	CCSGG	1 cut(s)	91
BcoDI	GTCTC	4 cut(s)	230, 320, 400, 629
BfaI	CTAG	1 cut(s)	572
BlpI	GCTNAGC	1 cut(s)	943
Bme1390I	CCNGG	1 cut(s)	91
Bme18I	GGWCC	2 cut(s)	49, 461
BmeT110I	CYCGRG	1 cut(s)	308
BmgT120I	GGNCC	2 cut(s)	49, 461
BmiI	GGNNCC	3 cut(s)	22, 75, 95
BmrFI	CCNGG	1 cut(s)	91
BmsI	GCATC	3 cut(s)	529, 645, 727
BpmI	CTGGAG	1 cut(s)	624
Bpu1102I	GCTNAGC	1 cut(s)	943
BpuEI	CTTGAG	1 cut(s)	993
BpuMI	CCSGG	1 cut(s)	91
BsaAI	YACGTR	1 cut(s)	928
BsaI	GGTCTC	1 cut(s)	400
BsaJI	CCNNGG	4 cut(s)	246, 259, 469, 725
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 470, 911
Bse1I	ACTGG	1 cut(s)	681
Bse3DI	GCAATG	4 cut(s)	30, 302, 394, 1002
BseDI	CCNNGG	4 cut(s)	246, 259, 469, 725
BseGI	GGATG	3 cut(s)	505, 742, 835
BseLI	CCNNNNNNNGG	3 cut(s)	90, 470, 911
BseMI	GCAATG	4 cut(s)	30, 302, 394, 1002
BseMII	CTCAG	1 cut(s)	957
BseNI	ACTGG	1 cut(s)	681
BseSI	GKGCMC	1 cut(s)	784
BseXI	GCAGC	5 cut(s)	73, 463, 752, 858, 934
BsgI	GTGCAG	1 cut(s)	248
Bsh1236I	CGCG	1 cut(s)	38
Bsh1285I	CGRYCG	1 cut(s)	519
BshFI	GGCC	2 cut(s)	445, 705
BsiEI	CGRYCG	1 cut(s)	519
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	1 cut(s)	90
BslFI	GGGAC	1 cut(s)	228
BslI	CCNNNNNNNGG	3 cut(s)	90, 470, 911
BsmAI	GTCTC	4 cut(s)	230, 320, 400, 629
BsmBI	CGTCTC	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	228
BsmI	GAATGC	1 cut(s)	914
BsnI	GGCC	2 cut(s)	445, 705
Bso31I	GGTCTC	1 cut(s)	400
BsoBI	CYCGRG	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	784
Bsp143I	GATC	2 cut(s)	126, 979
Bsp1720I	GCTNAGC	1 cut(s)	943
Bsp19I	CCATGG	1 cut(s)	259
BspANI	GGCC	2 cut(s)	445, 705
BspCNI	CTCAG	1 cut(s)	956
BspFNI	CGCG	1 cut(s)	38
BspHI	TCATGA	1 cut(s)	753
BspLI	GGNNCC	3 cut(s)	22, 75, 95
BspTNI	GGTCTC	1 cut(s)	400
BsrDI	GCAATG	4 cut(s)	30, 302, 394, 1002
BsrI	ACTGG	1 cut(s)	681
BssECI	CCNNGG	4 cut(s)	246, 259, 469, 725
BssMI	GATC	2 cut(s)	126, 979
BssNAI	GTATAC	1 cut(s)	552
BssT1I	CCWWGG	3 cut(s)	259, 469, 725
Bst1107I	GTATAC	1 cut(s)	552
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	1 cut(s)	614
BstBAI	YACGTR	1 cut(s)	928
BstC8I	GCNNGC	5 cut(s)	145, 149, 153, 710, 851
BstDEI	CTNAG	3 cut(s)	399, 943, 951
BstDSI	CCRYGG	2 cut(s)	246, 259
BstF5I	GGATG	3 cut(s)	505, 742, 835
BstFNI	CGCG	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	636
BstKTI	GATC	2 cut(s)	129, 982
BstMAI	GTCTC	4 cut(s)	230, 320, 400, 629
BstMBI	GATC	2 cut(s)	126, 979
BstMCI	CGRYCG	1 cut(s)	519
BstMWI	GCNNNNNNNGC	4 cut(s)	226, 482, 663, 808
BstSCI	CCNGG	1 cut(s)	89
BstSLI	GKGCMC	1 cut(s)	784
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	5 cut(s)	73, 463, 752, 858, 934
BstZ17I	GTATAC	1 cut(s)	552
BsuRI	GGCC	2 cut(s)	445, 705
BtgI	CCRYGG	2 cut(s)	246, 259
BtsCI	GGATG	3 cut(s)	505, 742, 835
BtsI	GCAGTG	2 cut(s)	629, 868
BtsIMutI	CAGTG	3 cut(s)	629, 667, 868
Cac8I	GCNNGC	5 cut(s)	145, 149, 153, 710, 851
CaiI	CAGNNNCTG	1 cut(s)	276
CciI	TCATGA	1 cut(s)	753
CfoI	GCGC	1 cut(s)	636
Cfr13I	GGNCC	2 cut(s)	49, 461
CseI	GACGC	1 cut(s)	817
Csp6I	GTAC	1 cut(s)	985
CspCI	CAANNNNNGTGG	2 cut(s)	13, 48
CviAII	CATG	3 cut(s)	260, 580, 754
CviQI	GTAC	1 cut(s)	985
DdeI	CTNAG	3 cut(s)	399, 943, 951
DpnI	GATC	2 cut(s)	128, 981
DpnII	GATC	2 cut(s)	126, 979
DrdI	GACNNNNNNGTC	1 cut(s)	497
DseDI	GACNNNNNNGTC	1 cut(s)	497
EaeI	YGGCCR	1 cut(s)	703
Eam1104I	CTCTTC	1 cut(s)	614
EarI	CTCTTC	1 cut(s)	614
EciI	GGCGGA	1 cut(s)	70
Eco130I	CCWWGG	3 cut(s)	259, 469, 725
Eco31I	GGTCTC	1 cut(s)	400
Eco47I	GGWCC	2 cut(s)	49, 461
Eco57I	CTGAAG	2 cut(s)	638, 643
Eco72I	CACGTG	1 cut(s)	928
Eco88I	CYCGRG	1 cut(s)	308
EcoT14I	CCWWGG	3 cut(s)	259, 469, 725
EcoT22I	ATGCAT	1 cut(s)	1004
ErhI	CCWWGG	3 cut(s)	259, 469, 725
Esp3I	CGTCTC	1 cut(s)	230
FaeI	CATG	3 cut(s)	263, 583, 757
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	3 cut(s)	259, 579, 753
FauI	CCCGC	2 cut(s)	152, 310
FauNDI	CATATG	1 cut(s)	818
FblI	GTMKAC	1 cut(s)	551
FokI	GGATG	3 cut(s)	492, 749, 842
FspBI	CTAG	1 cut(s)	572
FspI	TGCGCA	1 cut(s)	635
GlaI	GCGC	1 cut(s)	635
GsuI	CTGGAG	1 cut(s)	624
HaeIII	GGCC	2 cut(s)	445, 705
HapII	CCGG	1 cut(s)	90
HgaI	GACGC	1 cut(s)	817
HhaI	GCGC	1 cut(s)	636
Hin1II	CATG	3 cut(s)	263, 583, 757
Hin6I	GCGC	1 cut(s)	634
HinP1I	GCGC	1 cut(s)	634
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HindIII	AAGCTT	1 cut(s)	851
HinfI	GANTC	2 cut(s)	241, 622
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	1 cut(s)	836
Hpy166II	GTNNAC	2 cut(s)	340, 552
Hpy188I	TCNGA	1 cut(s)	364
Hpy188III	TCNNGA	2 cut(s)	509, 754
Hpy8I	GTNNAC	2 cut(s)	340, 552
HpyAV	CCTTC	4 cut(s)	108, 116, 551, 929
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	927
HpyF10VI	GCNNNNNNNGC	4 cut(s)	226, 482, 663, 808
HpyF3I	CTNAG	3 cut(s)	399, 943, 951
HpySE526I	ACGT	1 cut(s)	927
Hsp92II	CATG	3 cut(s)	263, 583, 757
HspAI	GCGC	1 cut(s)	634
Kzo9I	GATC	2 cut(s)	126, 979
LmnI	GCTCC	2 cut(s)	26, 278
Lsp1109I	GCAGC	5 cut(s)	73, 463, 752, 858, 934
LweI	GCATC	3 cut(s)	529, 645, 727
MaeI	CTAG	1 cut(s)	572
MaeII	ACGT	1 cut(s)	927
MalI	GATC	2 cut(s)	128, 981
MboI	GATC	2 cut(s)	126, 979
MboII	GAAGA	2 cut(s)	245, 631
MfeI	CAATTG	1 cut(s)	486
MhlI	GDGCHC	1 cut(s)	784
MluCI	AATT	4 cut(s)	162, 486, 875, 965
MlyI	GAGTC	2 cut(s)	250, 631
MmeI	TCCRAC	1 cut(s)	439
MnlI	CCTC	8 cut(s)	88, 109, 304, 391, 435, 727, 820, 933
Mph1103I	ATGCAT	1 cut(s)	1004
MroXI	GAANNNNTTC	2 cut(s)	375, 969
MseI	TTAA	1 cut(s)	438
MspA1I	CMGCKG	3 cut(s)	86, 743, 947
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	91
MunI	CAATTG	1 cut(s)	486
Mva1269I	GAATGC	1 cut(s)	914
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	4 cut(s)	226, 482, 663, 808
NciI	CCSGG	1 cut(s)	91
NcoI	CCATGG	1 cut(s)	259
NdeI	CATATG	1 cut(s)	818
NdeII	GATC	2 cut(s)	126, 979
NlaIII	CATG	3 cut(s)	263, 583, 757
NlaIV	GGNNCC	3 cut(s)	22, 75, 95
NsbI	TGCGCA	1 cut(s)	635
NsiI	ATGCAT	1 cut(s)	1004
PaeR7I	CTCGAG	1 cut(s)	308
PagI	TCATGA	1 cut(s)	753
PctI	GAATGC	1 cut(s)	914
PdmI	GAANNNNTTC	2 cut(s)	375, 969
PflMI	CCANNNNNTGG	1 cut(s)	470
PleI	GAGTC	2 cut(s)	249, 630
PmaCI	CACGTG	1 cut(s)	928
PmlI	CACGTG	1 cut(s)	928
PpsI	GAGTC	2 cut(s)	249, 630
Ppu21I	YACGTR	1 cut(s)	928
PsiI	TTATAA	1 cut(s)	771
PspCI	CACGTG	1 cut(s)	928
PspN4I	GGNNCC	3 cut(s)	22, 75, 95
PspPI	GGNCC	2 cut(s)	49, 461
PspXI	VCTCGAGB	1 cut(s)	308
PstNI	CAGNNNCTG	1 cut(s)	276
PvuII	CAGCTG	2 cut(s)	743, 947
RsaI	GTAC	1 cut(s)	986
RsaNI	GTAC	1 cut(s)	985
SaqAI	TTAA	1 cut(s)	438
Sau3AI	GATC	2 cut(s)	126, 979
Sau96I	GGNCC	2 cut(s)	49, 461
SchI	GAGTC	2 cut(s)	250, 631
ScrFI	CCNGG	1 cut(s)	91
SduI	GDGCHC	1 cut(s)	784
SfaNI	GCATC	3 cut(s)	529, 645, 727
Sfr274I	CTCGAG	1 cut(s)	308
SinI	GGWCC	2 cut(s)	49, 461
SlaI	CTCGAG	1 cut(s)	308
SmlI	CTYRAG	2 cut(s)	308, 1008
SmoI	CTYRAG	2 cut(s)	308, 1008
Sse9I	AATT	4 cut(s)	162, 486, 875, 965
SspI	AATATT	1 cut(s)	700
SspMI	CTAG	1 cut(s)	572
StyD4I	CCNGG	1 cut(s)	89
StyI	CCWWGG	3 cut(s)	259, 469, 725
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	1 cut(s)	930
TaqI	TCGA	3 cut(s)	120, 309, 519
TasI	AATT	4 cut(s)	162, 486, 875, 965
TatI	WGTACW	1 cut(s)	984
TauI	GCSGC	5 cut(s)	21, 38, 86, 158, 708
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	3 cut(s)	636, 667, 875
TseI	GCWGC	5 cut(s)	86, 476, 740, 846, 947
TspDTI	ATGAA	1 cut(s)	742
TspRI	CASTG	3 cut(s)	636, 667, 875
Van91I	CCANNNNNTGG	1 cut(s)	470
VpaK11BI	GGWCC	2 cut(s)	49, 461
XapI	RAATTY	1 cut(s)	965
XhoI	CTCGAG	1 cut(s)	308
XmiI	GTMKAC	1 cut(s)	551
XmnI	GAANNNNTTC	2 cut(s)	375, 969
XspI	CTAG	1 cut(s)	572
Zsp2I	ATGCAT	1 cut(s)	1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.