Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006490

Physical Location & Seq

Genomic Coordinates Forward (+)

52945973 .. 52948875

Gene Structure 2903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG372200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGTTAACACTCACAGCAAGCTCTCTCCCCATTCACACCGCCTCCACAGTCCAAAGGGGTCTACTCACTGTTCGCTCCGATGCATTCCCTTCTTTCCTTCCCAAACAAGTCGAGAACATCAAAGACCCATTTGCCCGGAAACTCGCTACACGAATAGAAAGGCTTCCCGTTAGTTTTGGTGAGAATTGTGTGATGAGTAGCTGTGTGAAGCCGTTGGTACAGAGCGAGACGAGTCCGGTGGTTCTTCTCCATGGTTTTGATAGCTCCTGTTTAGAATGGAGATACACTTATCCATTGCTTGAGGAAGCTGGCCTCGAGACTTGGGCTGTTGACATTCTTGGTTGGGGTTTCTCTGATTTAGAAAGACTCCCCCCATGTAATGTGGCCTCGAAGCGAGACCATTTTTTTCAGCTTTGGAAGTCCTACATTAAAAAGCCAATGATATTGGTTGGACCAAGCCTCGGTGCTGCTGTTGCAATTGACTTTGCAGCCAGCTATCCAGAAGCAGTTGAAAGGCTAGTTTTGATTGATGCAAGTGTGTATACAGAAGGCACCGAAAATCAACCAACCTTGTCTAAAATGTTAGCCTATGCTGGAGCATATATATTGAAGAGTTTCCCTTTGCGCTTCTATGTAACCTTTTTGTGCTTCACTGGCATATCATTGAGTACCAGCCTAGATTGGACAAATATTGGCCGCTTGCATTGCCGGTTTCCTTGGTGGGAGGATGCACTTGTGGATTTCATGATGAGTGGGGTGTACAATGTTAGTGCCCAGATAGAACAGGTAGTCAATTTTATTCTTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

269

Amino Acids

30.19

Weight (kDa)

5.76

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	79 - 209	1.3e-10	alpha/beta hydrolase fold
Hydrolase_4	PF12146	80 - 183	4.5e-10	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	80 - 192	8.9e-09	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13820
fragaria_vesca	FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_4g30130 FvH4_5g15690
malus_domestica	MD13G1063200.v1.1
prunus_persica	Prupe.1G286400_v2.0.a1 Prupe.1G286400_v2.0.a1
pyrus_communis	pycom13g05550
rosa_chinensis	RchiOBHm_Chr4g0438471
rosa_laevigata	RLG00000006361
rosa_multiflora	Rmu_sc0002327.1_g000021
rosa_roxburghii	Rroxscaffold_5G00379480
rosa_rugosa	Rorug04G0310100 Rorug04G0310100
rosa_samantha	Rh4AG360900 Rh4BG372200 Rh4CG386200 Rh4DG367000
rosa_wichuraiana	Rw0G006570 Rw0G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	551
AccI	GTMKAC	2 cut(s)	61, 542
AciI	CCGC	2 cut(s)	39, 697
AcoI	YGGCCR	1 cut(s)	694
AfaI	GTAC	3 cut(s)	219, 670, 761
AfiI	CCNNNNNNNGG	1 cut(s)	461
AgsI	TTSAA	2 cut(s)	512, 610
AluBI	AGCT	6 cut(s)	21, 201, 264, 308, 412, 495
AluI	AGCT	6 cut(s)	21, 201, 264, 308, 412, 495
Alw26I	GTCTC	3 cut(s)	221, 311, 390
Ama87I	CYCGRG	1 cut(s)	314
AoxI	GGCC	3 cut(s)	310, 384, 694
ApeKI	GCWGC	2 cut(s)	467, 488
Asp700I	GAANNNNTTC	2 cut(s)	162, 614
AspLEI	GCGC	1 cut(s)	627
AspS9I	GGNCC	1 cut(s)	452
AsuC2I	CCSGG	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	191
AvaI	CYCGRG	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	452
BaeGI	GKGCMC	1 cut(s)	775
BanI	GGYRCC	1 cut(s)	551
BbvI	GCAGC	2 cut(s)	454, 500
BceAI	ACGGC	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	136
BcoDI	GTCTC	3 cut(s)	221, 311, 390
BfaI	CTAG	2 cut(s)	518, 677
BisI	GCNGC	3 cut(s)	468, 489, 697
BlsI	GCNGC	3 cut(s)	469, 490, 698
Bme1390I	CCNGG	1 cut(s)	136
Bme18I	GGWCC	1 cut(s)	452
BmeT110I	CYCGRG	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	1 cut(s)	553
BmrFI	CCNGG	1 cut(s)	136
BmsI	GCATC	3 cut(s)	70, 520, 718
BpmI	CTGGAG	1 cut(s)	615
BpuEI	CTTGAG	1 cut(s)	320
BpuMI	CCSGG	1 cut(s)	136
BsaI	GGTCTC	1 cut(s)	390
BsaJI	CCNNGG	3 cut(s)	250, 460, 716
BsaWI	WCCGGW	1 cut(s)	235
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
Bse118I	RCCGGY	1 cut(s)	708
Bse1I	ACTGG	1 cut(s)	658
Bse3DI	GCAATG	2 cut(s)	293, 703
BseDI	CCNNGG	3 cut(s)	250, 460, 716
BseGI	GGATG	1 cut(s)	733
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseMI	GCAATG	2 cut(s)	293, 703
BseNI	ACTGG	1 cut(s)	658
BseSI	GKGCMC	1 cut(s)	775
BseXI	GCAGC	2 cut(s)	454, 500
BshFI	GGCC	3 cut(s)	312, 386, 696
BshNI	GGYRCC	1 cut(s)	551
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	3 cut(s)	136, 236, 709
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmAI	GTCTC	3 cut(s)	221, 311, 390
BsmBI	CGTCTC	1 cut(s)	221
BsmI	GAATGC	1 cut(s)	83
BsnI	GGCC	3 cut(s)	312, 386, 696
Bso31I	GGTCTC	1 cut(s)	390
BsoBI	CYCGRG	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	775
Bsp1407I	TGTACA	1 cut(s)	759
Bsp19I	CCATGG	1 cut(s)	250
BspACI	CCGC	2 cut(s)	39, 697
BspANI	GGCC	3 cut(s)	312, 386, 696
BspHI	TCATGA	1 cut(s)	744
BspLI	GGNNCC	1 cut(s)	553
BspT107I	GGYRCC	1 cut(s)	551
BspTNI	GGTCTC	1 cut(s)	390
BsrDI	GCAATG	2 cut(s)	293, 703
BsrFI	RCCGGY	1 cut(s)	708
BsrGI	TGTACA	1 cut(s)	759
BsrI	ACTGG	1 cut(s)	658
BssAI	RCCGGY	1 cut(s)	708
BssECI	CCNNGG	3 cut(s)	250, 460, 716
BssNAI	GTATAC	1 cut(s)	543
BssT1I	CCWWGG	2 cut(s)	250, 716
Bst1107I	GTATAC	1 cut(s)	543
Bst4CI	ACNGT	2 cut(s)	49, 70
Bst6I	CTCTTC	1 cut(s)	605
BstAUI	TGTACA	1 cut(s)	759
BstC8I	GCNNGC	4 cut(s)	19, 310, 493, 701
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	1 cut(s)	733
BstHHI	GCGC	1 cut(s)	627
BstMAI	GTCTC	3 cut(s)	221, 311, 390
BstMWI	GCNNNNNNNGC	3 cut(s)	473, 654, 705
BstSCI	CCNGG	1 cut(s)	134
BstSLI	GKGCMC	1 cut(s)	775
BstV1I	GCAGC	2 cut(s)	454, 500
BstZ17I	GTATAC	1 cut(s)	543
BsuRI	GGCC	3 cut(s)	312, 386, 696
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	733
BtsIMutI	CAGTG	2 cut(s)	66, 651
Cac8I	GCNNGC	4 cut(s)	19, 310, 493, 701
CciI	TCATGA	1 cut(s)	744
CfoI	GCGC	1 cut(s)	627
Cfr10I	RCCGGY	1 cut(s)	708
Cfr13I	GGNCC	1 cut(s)	452
Csp6I	GTAC	3 cut(s)	218, 669, 760
CviAII	CATG	3 cut(s)	251, 375, 745
CviQI	GTAC	3 cut(s)	218, 669, 760
EaeI	YGGCCR	1 cut(s)	694
Eam1104I	CTCTTC	1 cut(s)	605
EarI	CTCTTC	1 cut(s)	605
Eco130I	CCWWGG	2 cut(s)	250, 716
Eco31I	GGTCTC	1 cut(s)	390
Eco47I	GGWCC	1 cut(s)	452
Eco88I	CYCGRG	1 cut(s)	314
EcoT14I	CCWWGG	2 cut(s)	250, 716
EcoT22I	ATGCAT	1 cut(s)	85
ErhI	CCWWGG	2 cut(s)	250, 716
Esp3I	CGTCTC	1 cut(s)	221
FaeI	CATG	3 cut(s)	254, 378, 748
FatI	CATG	3 cut(s)	250, 374, 744
FblI	GTMKAC	2 cut(s)	61, 542
Fnu4HI	GCNGC	3 cut(s)	468, 489, 697
FokI	GGATG	1 cut(s)	740
Fsp4HI	GCNGC	3 cut(s)	468, 489, 697
FspBI	CTAG	2 cut(s)	518, 677
GlaI	GCGC	1 cut(s)	626
GluI	GCNGC	3 cut(s)	468, 489, 697
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	3 cut(s)	312, 386, 696
HapII	CCGG	3 cut(s)	136, 236, 709
HhaI	GCGC	1 cut(s)	627
Hin1II	CATG	3 cut(s)	254, 378, 748
Hin6I	GCGC	1 cut(s)	625
HinP1I	GCGC	1 cut(s)	625
HincII	GTYRAC	2 cut(s)	6, 331
HindII	GTYRAC	2 cut(s)	6, 331
HinfI	GANTC	2 cut(s)	232, 366
HpaI	GTTAAC	1 cut(s)	6
HpaII	CCGG	3 cut(s)	136, 236, 709
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	5 cut(s)	6, 62, 331, 543, 760
Hpy188I	TCNGA	2 cut(s)	79, 355
Hpy188III	TCNNGA	4 cut(s)	112, 316, 500, 745
Hpy8I	GTNNAC	5 cut(s)	6, 62, 331, 543, 760
HpyAV	CCTTC	3 cut(s)	99, 107, 542
HpyCH4III	ACNGT	2 cut(s)	49, 70
HpyCH4V	TGCA	6 cut(s)	83, 476, 488, 533, 703, 731
HpyF10VI	GCNNNNNNNGC	3 cut(s)	473, 654, 705
Hsp92II	CATG	3 cut(s)	254, 378, 748
HspAI	GCGC	1 cut(s)	625
KspAI	GTTAAC	1 cut(s)	6
LmnI	GCTCC	3 cut(s)	80, 269, 596
Lsp1109I	GCAGC	2 cut(s)	454, 500
LweI	GCATC	3 cut(s)	70, 520, 718
MaeI	CTAG	2 cut(s)	518, 677
MaeIII	GTNAC	1 cut(s)	634
MboII	GAAGA	3 cut(s)	236, 622, 794
MfeI	CAATTG	1 cut(s)	477
MhlI	GDGCHC	1 cut(s)	775
MluCI	AATT	3 cut(s)	184, 477, 793
MlyI	GAGTC	2 cut(s)	241, 360
MmeI	TCCRAC	1 cut(s)	430
MnlI	CCTC	6 cut(s)	52, 295, 323, 397, 470, 718
Mph1103I	ATGCAT	1 cut(s)	85
MroXI	GAANNNNTTC	2 cut(s)	162, 614
MseI	TTAA	2 cut(s)	5, 429
MspI	CCGG	3 cut(s)	136, 236, 709
MspR9I	CCNGG	1 cut(s)	136
MunI	CAATTG	1 cut(s)	477
Mva1269I	GAATGC	1 cut(s)	83
MwoI	GCNNNNNNNGC	3 cut(s)	473, 654, 705
NciI	CCSGG	1 cut(s)	136
NcoI	CCATGG	1 cut(s)	250
NlaIII	CATG	3 cut(s)	254, 378, 748
NlaIV	GGNNCC	1 cut(s)	553
NsiI	ATGCAT	1 cut(s)	85
PaeR7I	CTCGAG	1 cut(s)	314
PagI	TCATGA	1 cut(s)	744
PctI	GAATGC	1 cut(s)	83
PdmI	GAANNNNTTC	2 cut(s)	162, 614
PkrI	GCNGC	3 cut(s)	469, 490, 698
PleI	GAGTC	2 cut(s)	240, 360
PpsI	GAGTC	2 cut(s)	240, 360
PspN4I	GGNNCC	1 cut(s)	553
PspPI	GGNCC	1 cut(s)	452
RsaI	GTAC	3 cut(s)	219, 670, 761
RsaNI	GTAC	3 cut(s)	218, 669, 760
SaqAI	TTAA	2 cut(s)	5, 429
SatI	GCNGC	3 cut(s)	468, 489, 697
Sau96I	GGNCC	1 cut(s)	452
SchI	GAGTC	2 cut(s)	241, 360
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	1 cut(s)	775
SetI	ASST	9 cut(s)	23, 203, 266, 310, 414, 497, 572, 641, 789
SfaNI	GCATC	3 cut(s)	70, 520, 718
Sfr274I	CTCGAG	1 cut(s)	314
SinI	GGWCC	1 cut(s)	452
SlaI	CTCGAG	1 cut(s)	314
SmlI	CTYRAG	2 cut(s)	299, 314
SmoI	CTYRAG	2 cut(s)	299, 314
Sse9I	AATT	3 cut(s)	184, 477, 793
SsiI	CCGC	2 cut(s)	39, 697
SspI	AATATT	1 cut(s)	691
SspMI	CTAG	2 cut(s)	518, 677
StyD4I	CCNGG	1 cut(s)	134
StyI	CCWWGG	2 cut(s)	250, 716
TaaI	ACNGT	2 cut(s)	49, 70
TaqI	TCGA	3 cut(s)	111, 315, 389
TasI	AATT	3 cut(s)	184, 477, 793
TatI	WGTACW	1 cut(s)	759
TauI	GCSGC	1 cut(s)	699
Tru1I	TTAA	2 cut(s)	5, 429
Tru9I	TTAA	2 cut(s)	5, 429
TscAI	CASTG	2 cut(s)	73, 658
TseI	GCWGC	2 cut(s)	467, 488
TspDTI	ATGAA	2 cut(s)	733, 794
TspRI	CASTG	2 cut(s)	73, 658
VpaK11BI	GGWCC	1 cut(s)	452
XhoI	CTCGAG	1 cut(s)	314
XmiI	GTMKAC	2 cut(s)	61, 542
XmnI	GAANNNNTTC	2 cut(s)	162, 614
XspI	CTAG	2 cut(s)	518, 677
Zsp2I	ATGCAT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.