AT1G14345

Bacterial PH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015409
Physical Location & Seq
Forward (+)
4899045 .. 4900054
1010 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G14345.1

Sequence Viewer

Length: 591 bp
ATGGCAGCTTCTTCCTCAATTCCGCCGTCAACCGCCGTAACCTCCGTCGTTCGCAAATCTCTCCTCCTCTCAACCACCTTCTCCTTCCCCGCTTCTTCATTGTCTCCCTCCACGAAACTACCACAAAGACACATTCAAAGATTGCTCCTAGCTTCCTCCTCCGCATCCGCATCCACCGTTCCTTCCGATTCCAAACCGGCGAAGAAAGAAACAGTCTACTTCGACGGCGGAGCTCATTACGGAGATCTATTAGCCAATCTCATTCTAGGTCTAACCATCCTTTGGCTCCCACTAACCTTAGCTGCAGTGTCTCGAGCTTTTAACCTTCGTTACAGGTTCACTAACCTCCGCGTGACGGTTATTTCGGGACTCACCGGAGATGATCGGAGCGATTTCTCGTACAAAGTGATAAAAGACGTTCAAGTTGTGCCGAGGTTCATCGGAGAATGGGGAGATATCATCATTACTTTGAAAGATGGAACTAAAGTGGATTTGAGAAGTGTCCCTAAGTTCAGAGAGATTGCTAAGTACTGTTTATCTATGGCTGATCAACCTGCTGTTTTGAAAGAATCTGGTGCTAAAGGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bPH_2

Protein Analysis

196

Amino Acids

21.22

Weight (kDa)

9.81

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bPH_2 PF03703 107 - 178 6.5e-13 Bacterial PH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14345
fragaria_vesca FvH4_4g31650
malus_domestica MD13G1074900.v1.1
prunus_persica Prupe.1G271300_v2.0.a1
pyrus_communis pycom13g06670
rosa_chinensis RchiOBHm_Chr4g0440151
rosa_laevigata RLG00000006201
rosa_multiflora Rmu_co8332745.1_g000001 Rmu_sc0001685.1_g000020
rosa_roxburghii Rroxscaffold_5G00381080
rosa_rugosa Rorug04G0324800
rosa_samantha Rh4AG375600 Rh4BG388000 Rh4CG402600 Rh4DG382200
rosa_wichuraiana Rw4G032140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 562
AccB7I CCANNNNNTGG 1 cut(s) 282
AccI GTMKAC 1 cut(s) 216
AccII CGCG 1 cut(s) 351
AciI CCGC 7 cut(s) 23, 33, 90, 162, 168, 228, 349
AfaI GTAC 2 cut(s) 401, 530
AfiI CCNNNNNNNGG 2 cut(s) 282, 355
AgsI TTSAA 4 cut(s) 137, 422, 472, 565
AluBI AGCT 5 cut(s) 8, 152, 233, 302, 317
AluI AGCT 5 cut(s) 8, 152, 233, 302, 317
Alw21I GWGCWC 1 cut(s) 235
Alw26I GTCTC 2 cut(s) 108, 315
Ama87I CYCGRG 1 cut(s) 312
ApeKI GCWGC 2 cut(s) 5, 302
ArsI GACNNNNNNTTYG 2 cut(s) 346, 378
AsuHPI GGTGA 1 cut(s) 364
AvaI CYCGRG 1 cut(s) 312
BanII GRGCYC 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 235
BbvI GCAGC 2 cut(s) 17, 289
BccI CCATC 2 cut(s) 284, 470
BceAI ACGGC 3 cut(s) 10, 20, 241
BclI TGATCA 1 cut(s) 547
BcoDI GTCTC 2 cut(s) 108, 315
BfaI CTAG 2 cut(s) 149, 266
BfmI CTRYAG 1 cut(s) 303
BfuAI ACCTGC 1 cut(s) 562
BglII AGATCT 1 cut(s) 244
BisI GCNGC 2 cut(s) 6, 303
BlsI GCNGC 2 cut(s) 7, 304
BmcAI AGTACT 1 cut(s) 530
BmeT110I CYCGRG 1 cut(s) 312
BmiI GGNNCC 1 cut(s) 287
BmsI GCATC 2 cut(s) 173, 179
Bpu10I CCTNAGC 1 cut(s) 298
BsaJI CCNNGG 1 cut(s) 431
BsaWI WCCGGW 1 cut(s) 374
Bsc4I CCNNNNNNNGG 2 cut(s) 282, 355
Bse118I RCCGGY 1 cut(s) 196
BseDI CCNNGG 1 cut(s) 431
BseGI GGATG 3 cut(s) 164, 170, 276
BseLI CCNNNNNNNGG 2 cut(s) 282, 355
BseRI GAGGAG 3 cut(s) 53, 56, 148
BseXI GCAGC 2 cut(s) 17, 289
Bsh1236I CGCG 1 cut(s) 351
BsiHKAI GWGCWC 1 cut(s) 235
BsiHKCI CYCGRG 1 cut(s) 312
BsiSI CCGG 2 cut(s) 197, 375
BslFI GGGAC 2 cut(s) 381, 488
BslI CCNNNNNNNGG 2 cut(s) 282, 355
BsmAI GTCTC 2 cut(s) 108, 315
BsmFI GGGAC 2 cut(s) 381, 488
BsoBI CYCGRG 1 cut(s) 312
Bsp1286I GDGCHC 1 cut(s) 235
Bsp143I GATC 3 cut(s) 244, 382, 547
BspACI CCGC 7 cut(s) 23, 33, 90, 162, 168, 228, 349
BspFNI CGCG 1 cut(s) 351
BspLI GGNNCC 1 cut(s) 287
BspMAI CTGCAG 1 cut(s) 307
BspMI ACCTGC 1 cut(s) 562
BsrFI RCCGGY 1 cut(s) 196
BssAI RCCGGY 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 431
BssMI GATC 3 cut(s) 244, 382, 547
Bst4CI ACNGT 4 cut(s) 178, 214, 358, 533
BstDEI CTNAG 3 cut(s) 298, 507, 525
BstF5I GGATG 3 cut(s) 164, 170, 276
BstFNI CGCG 1 cut(s) 351
BstKTI GATC 3 cut(s) 247, 385, 550
BstMAI GTCTC 2 cut(s) 108, 315
BstMBI GATC 3 cut(s) 244, 382, 547
BstSFI CTRYAG 1 cut(s) 303
BstUI CGCG 1 cut(s) 351
BstV1I GCAGC 2 cut(s) 17, 289
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BtsCI GGATG 3 cut(s) 164, 170, 276
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 312
BveI ACCTGC 1 cut(s) 562
Cfr10I RCCGGY 1 cut(s) 196
Csp6I GTAC 2 cut(s) 400, 529
CviJI RGCY 9 cut(s) 8, 152, 233, 254, 286, 302, 317, 545, 585
CviKI_1 RGCY 9 cut(s) 8, 152, 233, 254, 286, 302, 317, 545, 585
CviQI GTAC 2 cut(s) 400, 529
DdeI CTNAG 3 cut(s) 298, 507, 525
DpnI GATC 3 cut(s) 246, 384, 549
DpnII GATC 3 cut(s) 244, 382, 547
EciI GGCGGA 2 cut(s) 12, 243
Ecl136II GAGCTC 1 cut(s) 233
Eco24I GRGCYC 1 cut(s) 235
Eco32I GATATC 1 cut(s) 457
Eco53kI GAGCTC 1 cut(s) 233
Eco88I CYCGRG 1 cut(s) 312
EcoICRI GAGCTC 1 cut(s) 233
EcoRV GATATC 1 cut(s) 457
EcoT38I GRGCYC 1 cut(s) 235
FaiI YATR 1 cut(s) 542
FaqI GGGAC 2 cut(s) 381, 488
FauI CCCGC 1 cut(s) 97
FbaI TGATCA 1 cut(s) 547
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 2 cut(s) 6, 303
FokI GGATG 3 cut(s) 151, 157, 263
FriOI GRGCYC 1 cut(s) 235
Fsp4HI GCNGC 2 cut(s) 6, 303
FspBI CTAG 2 cut(s) 149, 266
GluI GCNGC 2 cut(s) 6, 303
HapII CCGG 2 cut(s) 197, 375
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 3 cut(s) 188, 369, 569
HpaII CCGG 2 cut(s) 197, 375
HphI GGTGA 1 cut(s) 364
Hpy166II GTNNAC 3 cut(s) 30, 217, 339
Hpy188I TCNGA 4 cut(s) 187, 387, 443, 515
Hpy188III TCNNGA 2 cut(s) 312, 366
Hpy8I GTNNAC 3 cut(s) 30, 217, 339
Hpy99I CGWCG 2 cut(s) 50, 227
HpyAV CCTTC 4 cut(s) 88, 94, 192, 335
HpyCH4III ACNGT 4 cut(s) 178, 214, 358, 533
HpyCH4IV ACGT 1 cut(s) 417
HpyCH4V TGCA 1 cut(s) 305
HpyF3I CTNAG 3 cut(s) 298, 507, 525
HpySE526I ACGT 1 cut(s) 417
Ksp22I TGATCA 1 cut(s) 547
Kzo9I GATC 3 cut(s) 244, 382, 547
LmnI GCTCC 4 cut(s) 150, 230, 291, 387
LpnPI CCDG 5 cut(s) 210, 319, 388, 558, 567
Lsp1109I GCAGC 2 cut(s) 17, 289
LweI GCATC 2 cut(s) 173, 179
MaeI CTAG 2 cut(s) 149, 266
MaeII ACGT 1 cut(s) 417
MaeIII GTNAC 3 cut(s) 37, 329, 352
MalI GATC 3 cut(s) 246, 384, 549
MboI GATC 3 cut(s) 244, 382, 547
MboII GAAGA 3 cut(s) 3, 87, 214
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 235
MluCI AATT 1 cut(s) 18
MlyI GAGTC 1 cut(s) 363
MnlI CCTC 9 cut(s) 25, 52, 74, 77, 118, 166, 169, 356, 426
MseI TTAA 1 cut(s) 321
MspI CCGG 2 cut(s) 197, 375
MvnI CGCG 1 cut(s) 351
NdeII GATC 3 cut(s) 244, 382, 547
NlaIV GGNNCC 1 cut(s) 287
NmeAIII GCCGAG 1 cut(s) 456
NmuCI GTSAC 1 cut(s) 352
PaeR7I CTCGAG 1 cut(s) 312
PfeI GAWTC 2 cut(s) 188, 569
PflMI CCANNNNNTGG 1 cut(s) 282
PkrI GCNGC 2 cut(s) 7, 304
PleI GAGTC 1 cut(s) 363
PpsI GAGTC 1 cut(s) 363
Psp124BI GAGCTC 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 287
PstI CTGCAG 1 cut(s) 307
PsuI RGATCY 1 cut(s) 244
RsaI GTAC 2 cut(s) 401, 530
RsaNI GTAC 2 cut(s) 400, 529
SacI GAGCTC 1 cut(s) 235
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 2 cut(s) 6, 303
Sau3AI GATC 3 cut(s) 244, 382, 547
ScaI AGTACT 1 cut(s) 530
SchI GAGTC 1 cut(s) 363
SduI GDGCHC 1 cut(s) 235
SfaNI GCATC 2 cut(s) 173, 179
SfcI CTRYAG 1 cut(s) 303
Sfr274I CTCGAG 1 cut(s) 312
SlaI CTCGAG 1 cut(s) 312
SmlI CTYRAG 1 cut(s) 312
SmoI CTYRAG 1 cut(s) 312
Sse9I AATT 1 cut(s) 18
SsiI CCGC 7 cut(s) 23, 33, 90, 162, 168, 228, 349
SspMI CTAG 2 cut(s) 149, 266
SstI GAGCTC 1 cut(s) 235
TaaI ACNGT 4 cut(s) 178, 214, 358, 533
TaiI ACGT 1 cut(s) 420
TaqI TCGA 2 cut(s) 222, 313
TasI AATT 1 cut(s) 18
TatI WGTACW 1 cut(s) 528
TfiI GAWTC 2 cut(s) 188, 569
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 1 cut(s) 312
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 2 cut(s) 5, 302
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 2 cut(s) 87, 427
TspGWI ACGGA 2 cut(s) 34, 255
TspRI CASTG 1 cut(s) 312
Van91I CCANNNNNTGG 1 cut(s) 282
XhoI CTCGAG 1 cut(s) 312
XmiI GTMKAC 1 cut(s) 216
XspI CTAG 2 cut(s) 149, 266
ZrmI AGTACT 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.