pycom13g06670

Bacterial PH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0015409
Physical Location & Seq
Forward (+)
4378305 .. 4378919
615 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g06670.1

Sequence Viewer

Length: 615 bp
ATGGCCTCCACCCCAATCCTCTCCCCCACCACAACCACCACCACTTCCTCCTTAGTCCACCACCACCACCAATCTCTACACTTCTGTAAATTACCCTTTCCCAACTCCCTCATCAAACCCAGCACTCTCAATTCCAACAGACCACTTACCAGACTTCACGTGTCCACCCCAACAAACAAACCCAGCAACACCACCGCCACATCGACCTCCACCTCCAAGAAACCCACGACGGAGACCATCTACTTCGACGGCGGAGCTCACTATGGCGACCTCCTGGCCAACCTTATCCTGGGTTTCACTCTTCTCTGGCTGGCCTTGACTTTAGCTGCGGTCTTCAGGGCCTTCTTTTTGAGGTACAGGTTCACCAACCTGCGTGTGACGGTAATCTCGGGACTGACAGGTCAGGACAGGAGCGACTTCTCGTACAAGGTGATCAAGGATGTCCAGGTGGTGCCGCGATTCATCGGCGAATGGGGTGATATTATCATCACCCTCAAAGACGGCACCAAGGTTGACCTGAGGAGTGTGCCCAAGTTCAGGGAGATTGCCAAGTATTGCCTCTCTTTGGCGGAAAAGCCGGCCGTATTGAAGGAAACGGGAACCAAAGGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bPH_2

Protein Analysis

205

Amino Acids

22.61

Weight (kDa)

9.88

Isoelectric Point (pI)

27.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bPH_2 PF03703 116 - 186 2.9e-13 Bacterial PH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14345
fragaria_vesca FvH4_4g31650
malus_domestica MD13G1074900.v1.1
prunus_persica Prupe.1G271300_v2.0.a1
pyrus_communis pycom13g06670
rosa_chinensis RchiOBHm_Chr4g0440151
rosa_laevigata RLG00000006201
rosa_multiflora Rmu_co8332745.1_g000001 Rmu_sc0001685.1_g000020
rosa_roxburghii Rroxscaffold_5G00381080
rosa_rugosa Rorug04G0324800
rosa_samantha Rh4AG375600 Rh4BG388000 Rh4CG402600 Rh4DG382200
rosa_wichuraiana Rw4G032140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 399
Acc36I ACCTGC 1 cut(s) 378
AccB1I GGYRCC 2 cut(s) 451, 503
AccII CGCG 1 cut(s) 457
AciI CCGC 5 cut(s) 195, 252, 329, 455, 569
AcoI YGGCCR 2 cut(s) 276, 579
AcuI CTGAAG 1 cut(s) 319
AcvI CACGTG 1 cut(s) 160
AfaI GTAC 2 cut(s) 356, 425
AfiI CCNNNNNNNGG 3 cut(s) 289, 537, 565
AflIII ACRYGT 1 cut(s) 159
AgsI TTSAA 1 cut(s) 589
AjnI CCWGG 3 cut(s) 273, 288, 444
AluBI AGCT 2 cut(s) 257, 326
AluI AGCT 2 cut(s) 257, 326
Alw21I GWGCWC 1 cut(s) 259
Alw26I GTCTC 1 cut(s) 227
Ama87I CYCGRG 1 cut(s) 388
AoxI GGCC 5 cut(s) 3, 276, 312, 339, 579
ApeKI GCWGC 1 cut(s) 326
AspS9I GGNCC 1 cut(s) 339
AsuHPI GGTGA 4 cut(s) 355, 442, 481, 488
AvaI CYCGRG 1 cut(s) 388
AxyI CCTNAGG 1 cut(s) 518
BaeGI GKGCMC 1 cut(s) 531
BalI TGGCCA 1 cut(s) 278
BanI GGYRCC 2 cut(s) 451, 503
BanII GRGCYC 1 cut(s) 259
BbrPI CACGTG 1 cut(s) 160
BbsI GAAGAC 1 cut(s) 325
Bbv12I GWGCWC 1 cut(s) 259
BbvI GCAGC 1 cut(s) 313
BccI CCATC 1 cut(s) 245
BceAI ACGGC 3 cut(s) 265, 517, 566
BciT130I CCWGG 3 cut(s) 275, 290, 446
BclI TGATCA 1 cut(s) 432
BcoDI GTCTC 1 cut(s) 227
BfuAI ACCTGC 1 cut(s) 378
BisI GCNGC 2 cut(s) 327, 455
BlsI GCNGC 2 cut(s) 328, 456
Bme1390I CCNGG 3 cut(s) 275, 290, 446
BmeT110I CYCGRG 1 cut(s) 388
BmgT120I GGNCC 1 cut(s) 339
BmiI GGNNCC 3 cut(s) 453, 505, 601
BmrFI CCNGG 3 cut(s) 275, 290, 446
BpiI GAAGAC 1 cut(s) 325
BsaAI YACGTR 1 cut(s) 160
BsaI GGTCTC 1 cut(s) 227
BsaJI CCNNGG 2 cut(s) 289, 507
Bsc4I CCNNNNNNNGG 3 cut(s) 289, 537, 565
Bse118I RCCGGY 1 cut(s) 577
Bse21I CCTNAGG 1 cut(s) 518
BseBI CCWGG 3 cut(s) 275, 290, 446
BseDI CCNNGG 2 cut(s) 289, 507
BseGI GGATG 1 cut(s) 445
BseLI CCNNNNNNNGG 3 cut(s) 289, 537, 565
BseMII CTCAG 1 cut(s) 509
BseRI GAGGAG 1 cut(s) 535
BseSI GKGCMC 1 cut(s) 531
BseX3I CGGCCG 1 cut(s) 579
BseXI GCAGC 1 cut(s) 313
BseYI CCCAGC 2 cut(s) 119, 182
Bsh1236I CGCG 1 cut(s) 457
Bsh1285I CGRYCG 1 cut(s) 582
BshFI GGCC 5 cut(s) 5, 278, 314, 341, 581
BshNI GGYRCC 2 cut(s) 451, 503
BsiEI CGRYCG 1 cut(s) 582
BsiHKAI GWGCWC 1 cut(s) 259
BsiHKCI CYCGRG 1 cut(s) 388
BsiSI CCGG 1 cut(s) 578
BslFI GGGAC 1 cut(s) 405
BslI CCNNNNNNNGG 3 cut(s) 289, 537, 565
BsmAI GTCTC 1 cut(s) 227
BsmFI GGGAC 1 cut(s) 405
BsnI GGCC 5 cut(s) 5, 278, 314, 341, 581
Bso31I GGTCTC 1 cut(s) 227
BsoBI CYCGRG 1 cut(s) 388
Bsp1286I GDGCHC 2 cut(s) 259, 531
Bsp143I GATC 1 cut(s) 432
BspACI CCGC 5 cut(s) 195, 252, 329, 455, 569
BspANI GGCC 5 cut(s) 5, 278, 314, 341, 581
BspCNI CTCAG 1 cut(s) 510
BspFNI CGCG 1 cut(s) 457
BspLI GGNNCC 3 cut(s) 453, 505, 601
BspMI ACCTGC 1 cut(s) 378
BspT107I GGYRCC 2 cut(s) 451, 503
BspTNI GGTCTC 1 cut(s) 227
BsrFI RCCGGY 1 cut(s) 577
BssAI RCCGGY 1 cut(s) 577
BssECI CCNNGG 2 cut(s) 289, 507
BssMI GATC 1 cut(s) 432
BssT1I CCWWGG 1 cut(s) 507
Bst2UI CCWGG 3 cut(s) 275, 290, 446
Bst4CI ACNGT 1 cut(s) 382
Bst6I CTCTTC 1 cut(s) 306
BstBAI YACGTR 1 cut(s) 160
BstC8I GCNNGC 2 cut(s) 312, 579
BstDEI CTNAG 2 cut(s) 52, 518
BstF5I GGATG 1 cut(s) 445
BstFNI CGCG 1 cut(s) 457
BstKTI GATC 1 cut(s) 435
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 1 cut(s) 432
BstMCI CGRYCG 1 cut(s) 582
BstNI CCWGG 3 cut(s) 275, 290, 446
BstSCI CCNGG 3 cut(s) 273, 288, 444
BstSLI GKGCMC 1 cut(s) 531
BstUI CGCG 1 cut(s) 457
BstV1I GCAGC 1 cut(s) 313
BstV2I GAAGAC 1 cut(s) 325
BstZI CGGCCG 1 cut(s) 579
Bsu36I CCTNAGG 1 cut(s) 518
BsuRI GGCC 5 cut(s) 5, 278, 314, 341, 581
BtsCI GGATG 1 cut(s) 445
BveI ACCTGC 1 cut(s) 378
Cac8I GCNNGC 2 cut(s) 312, 579
Cfr10I RCCGGY 1 cut(s) 577
Cfr13I GGNCC 1 cut(s) 339
Csp6I GTAC 2 cut(s) 355, 424
CviQI GTAC 2 cut(s) 355, 424
DdeI CTNAG 2 cut(s) 52, 518
DpnI GATC 1 cut(s) 434
DpnII GATC 1 cut(s) 432
DrdI GACNNNNNNGTC 1 cut(s) 399
DseDI GACNNNNNNGTC 1 cut(s) 399
EaeI YGGCCR 2 cut(s) 276, 579
EagI CGGCCG 1 cut(s) 579
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
EciI GGCGGA 2 cut(s) 267, 584
Ecl136II GAGCTC 1 cut(s) 257
EclXI CGGCCG 1 cut(s) 579
Eco130I CCWWGG 1 cut(s) 507
Eco24I GRGCYC 1 cut(s) 259
Eco31I GGTCTC 1 cut(s) 227
Eco52I CGGCCG 1 cut(s) 579
Eco53kI GAGCTC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 319
Eco72I CACGTG 1 cut(s) 160
Eco81I CCTNAGG 1 cut(s) 518
Eco88I CYCGRG 1 cut(s) 388
EcoICRI GAGCTC 1 cut(s) 257
EcoO109I RGGNCCY 1 cut(s) 339
EcoRII CCWGG 3 cut(s) 273, 288, 444
EcoT14I CCWWGG 1 cut(s) 507
EcoT38I GRGCYC 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 507
FaiI YATR 1 cut(s) 264
FaqI GGGAC 1 cut(s) 405
FbaI TGATCA 1 cut(s) 432
Fnu4HI GCNGC 2 cut(s) 327, 455
FokI GGATG 1 cut(s) 452
FriOI GRGCYC 1 cut(s) 259
Fsp4HI GCNGC 2 cut(s) 327, 455
GluI GCNGC 2 cut(s) 327, 455
GsaI CCCAGC 2 cut(s) 123, 186
HaeIII GGCC 5 cut(s) 5, 278, 314, 341, 581
HapII CCGG 1 cut(s) 578
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HinfI GANTC 1 cut(s) 459
HpaII CCGG 1 cut(s) 578
HphI GGTGA 4 cut(s) 355, 442, 481, 488
Hpy166II GTNNAC 4 cut(s) 58, 165, 363, 514
Hpy188III TCNNGA 2 cut(s) 390, 404
Hpy8I GTNNAC 4 cut(s) 58, 165, 363, 514
Hpy99I CGWCG 2 cut(s) 232, 251
HpyAV CCTTC 2 cut(s) 352, 583
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4IV ACGT 1 cut(s) 159
HpyF3I CTNAG 2 cut(s) 52, 518
HpySE526I ACGT 1 cut(s) 159
KroI GCCGGC 1 cut(s) 577
KroNI GCCGGC 1 cut(s) 579
Ksp22I TGATCA 1 cut(s) 432
Kzo9I GATC 1 cut(s) 432
LmnI GCTCC 2 cut(s) 254, 411
Lsp1109I GCAGC 1 cut(s) 313
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 1 cut(s) 376
MalI GATC 1 cut(s) 434
MboI GATC 1 cut(s) 432
MboII GAAGA 2 cut(s) 293, 325
MhlI GDGCHC 2 cut(s) 259, 531
MlsI TGGCCA 1 cut(s) 278
MluCI AATT 2 cut(s) 89, 130
MluNI TGGCCA 1 cut(s) 278
MmeI TCCRAC 1 cut(s) 159
Mox20I TGGCCA 1 cut(s) 278
MroNI GCCGGC 1 cut(s) 577
MscI TGGCCA 1 cut(s) 278
MseI TTAA 1 cut(s) 613
Msp20I TGGCCA 1 cut(s) 278
MspI CCGG 1 cut(s) 578
MspR9I CCNGG 3 cut(s) 275, 290, 446
MvaI CCWGG 3 cut(s) 275, 290, 446
MvnI CGCG 1 cut(s) 457
NaeI GCCGGC 1 cut(s) 579
NdeII GATC 1 cut(s) 432
NgoMIV GCCGGC 1 cut(s) 577
NlaIV GGNNCC 3 cut(s) 453, 505, 601
NmuCI GTSAC 1 cut(s) 376
PdiI GCCGGC 1 cut(s) 579
PfeI GAWTC 1 cut(s) 459
PkrI GCNGC 2 cut(s) 328, 456
PmaCI CACGTG 1 cut(s) 160
PmlI CACGTG 1 cut(s) 160
Ppu21I YACGTR 1 cut(s) 160
Psp124BI GAGCTC 1 cut(s) 259
Psp6I CCWGG 3 cut(s) 273, 288, 444
PspCI CACGTG 1 cut(s) 160
PspFI CCCAGC 2 cut(s) 119, 182
PspGI CCWGG 3 cut(s) 273, 288, 444
PspN4I GGNNCC 3 cut(s) 453, 505, 601
PspPI GGNCC 1 cut(s) 339
RsaI GTAC 2 cut(s) 356, 425
RsaNI GTAC 2 cut(s) 355, 424
SacI GAGCTC 1 cut(s) 259
SaqAI TTAA 1 cut(s) 613
SatI GCNGC 2 cut(s) 327, 455
Sau3AI GATC 1 cut(s) 432
Sau96I GGNCC 1 cut(s) 339
ScrFI CCNGG 3 cut(s) 275, 290, 446
SduI GDGCHC 2 cut(s) 259, 531
Sse9I AATT 2 cut(s) 89, 130
SsiI CCGC 5 cut(s) 195, 252, 329, 455, 569
SstI GAGCTC 1 cut(s) 259
StyD4I CCNGG 3 cut(s) 273, 288, 444
StyI CCWWGG 1 cut(s) 507
TaaI ACNGT 1 cut(s) 382
TaiI ACGT 1 cut(s) 162
TaqI TCGA 2 cut(s) 203, 246
TasI AATT 2 cut(s) 89, 130
TauI GCSGC 1 cut(s) 457
TfiI GAWTC 1 cut(s) 459
Tru1I TTAA 1 cut(s) 613
Tru9I TTAA 1 cut(s) 613
TseFI GTSAC 1 cut(s) 376
TseI GCWGC 1 cut(s) 326
Tsp45I GTSAC 1 cut(s) 376
TspDTI ATGAA 1 cut(s) 451
TspGWI ACGGA 1 cut(s) 245
XcmI CCANNNNNNNNNTGG 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.