Rw4G032140

Bacterial PH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0015409
Physical Location & Seq
Forward (+)
59267769 .. 59269108
1340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G032140.1

Sequence Viewer

Length: 588 bp
ATGGCCTCCACCTCAATTCTCTCACCCACCACCACCACCACCACCACCTCCATAGTCCGCCACCACTCATCCAAGCTCCCCTTCCCTTACTCCACCAAACCCATTTCCACCACTTTCTCTAACAACAGACCACTCACCAGACTCCACGTGTCCACCCCGACCAACAAGCCCGCCAACAACACCGCCAACAAGAAACCCACCTCGGAGTCCGTCTTCTTCGACGGCGGGGCCCACTACGGCGACCTCGCGGCCAACCTGGTCCTGGGCTTCACTCTCCTCTGGCTGCCCCTAACGTTAGCCGCCGTGTTCCGGGCGTTTTTCCTGAGGTACAGGTTCACCAACCTGCGGGTGACGGTGATATCGGGACTGACGGGCCAGGACAGGAGTGACTTCTCGTACAAGGTCATCAAGGACGTTCAGGTGGTGCCACGTTTCATCGGCGAGTGGGGTGATATTATCATCACCCTCAGAGATGGCACCAAGGTCGATCTTAGAAGTGTGCCCAAGTTCAGAGAGATTGCCAAGTATTGCTTATCCATGGCTGATAAGCCAGCCGTAGTTAAAGAAACAGGAACTAAGGGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bPH_2

Protein Analysis

195

Amino Acids

21.6

Weight (kDa)

10.09

Isoelectric Point (pI)

31.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bPH_2 PF03703 107 - 177 4.6e-13 Bacterial PH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14345
fragaria_vesca FvH4_4g31650
malus_domestica MD13G1074900.v1.1
prunus_persica Prupe.1G271300_v2.0.a1
pyrus_communis pycom13g06670
rosa_chinensis RchiOBHm_Chr4g0440151
rosa_laevigata RLG00000006201
rosa_multiflora Rmu_co8332745.1_g000001 Rmu_sc0001685.1_g000020
rosa_roxburghii Rroxscaffold_5G00381080
rosa_rugosa Rorug04G0324800
rosa_samantha Rh4AG375600 Rh4BG388000 Rh4CG402600 Rh4DG382200
rosa_wichuraiana Rw4G032140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 351
AccB1I GGYRCC 2 cut(s) 424, 476
AccII CGCG 1 cut(s) 248
AciI CCGC 7 cut(s) 58, 171, 183, 225, 248, 300, 346
AclI AACGTT 1 cut(s) 293
AcoI YGGCCR 1 cut(s) 249
AcvI CACGTG 1 cut(s) 148
AfaI GTAC 2 cut(s) 329, 398
AfiI CCNNNNNNNGG 3 cut(s) 262, 309, 345
AflIII ACRYGT 1 cut(s) 147
AjnI CCWGG 3 cut(s) 255, 261, 375
AjuI GAANNNNNNNTTGG 2 cut(s) 65, 97
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
AoxI GGCC 4 cut(s) 3, 228, 249, 373
ApaI GGGCCC 1 cut(s) 232
ApeKI GCWGC 1 cut(s) 283
AspS9I GGNCC 4 cut(s) 228, 229, 259, 373
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 7 cut(s) 15, 127, 328, 361, 367, 454, 461
AvaII GGWCC 1 cut(s) 259
AxyI CCTNAGG 1 cut(s) 323
BaeGI GKGCMC 2 cut(s) 232, 504
BanI GGYRCC 2 cut(s) 424, 476
BanII GRGCYC 1 cut(s) 232
BbrPI CACGTG 1 cut(s) 148
BbsI GAAGAC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 270
BccI CCATC 1 cut(s) 467
BceAI ACGGC 4 cut(s) 238, 253, 287, 539
BcgI CGANNNNNNTGC 2 cut(s) 466, 500
BciT130I CCWGG 3 cut(s) 257, 263, 377
BcnI CCSGG 1 cut(s) 311
BfuAI ACCTGC 1 cut(s) 351
BisI GCNGC 3 cut(s) 249, 284, 300
BlsI GCNGC 3 cut(s) 250, 285, 301
Bme1390I CCNGG 4 cut(s) 257, 263, 311, 377
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 4 cut(s) 228, 229, 259, 373
BmiI GGNNCC 4 cut(s) 229, 230, 426, 478
BmrFI CCNGG 4 cut(s) 257, 263, 311, 377
BpiI GAAGAC 1 cut(s) 205
BpuMI CCSGG 1 cut(s) 311
BsaAI YACGTR 1 cut(s) 148
BsaJI CCNNGG 4 cut(s) 201, 262, 480, 537
Bsc4I CCNNNNNNNGG 3 cut(s) 262, 309, 345
Bse21I CCTNAGG 1 cut(s) 323
BseBI CCWGG 3 cut(s) 257, 263, 377
BseDI CCNNGG 4 cut(s) 201, 262, 480, 537
BseGI GGATG 1 cut(s) 68
BseLI CCNNNNNNNGG 3 cut(s) 262, 309, 345
BseMII CTCAG 2 cut(s) 314, 481
BseRI GAGGAG 1 cut(s) 266
BseSI GKGCMC 2 cut(s) 232, 504
BseXI GCAGC 1 cut(s) 270
Bsh1236I CGCG 1 cut(s) 248
BshFI GGCC 4 cut(s) 5, 230, 251, 375
BshNI GGYRCC 2 cut(s) 424, 476
BsiSI CCGG 1 cut(s) 310
BslFI GGGAC 1 cut(s) 378
BslI CCNNNNNNNGG 3 cut(s) 262, 309, 345
BsmFI GGGAC 1 cut(s) 378
BsnI GGCC 4 cut(s) 5, 230, 251, 375
Bsp120I GGGCCC 1 cut(s) 228
Bsp1286I GDGCHC 2 cut(s) 232, 504
Bsp143I GATC 1 cut(s) 487
Bsp19I CCATGG 1 cut(s) 537
BspACI CCGC 7 cut(s) 58, 171, 183, 225, 248, 300, 346
BspANI GGCC 4 cut(s) 5, 230, 251, 375
BspCNI CTCAG 2 cut(s) 315, 480
BspFNI CGCG 1 cut(s) 248
BspLI GGNNCC 4 cut(s) 229, 230, 426, 478
BspMI ACCTGC 1 cut(s) 351
BspT107I GGYRCC 2 cut(s) 424, 476
BssECI CCNNGG 4 cut(s) 201, 262, 480, 537
BssMI GATC 1 cut(s) 487
BssT1I CCWWGG 2 cut(s) 480, 537
Bst2UI CCWGG 3 cut(s) 257, 263, 377
Bst4CI ACNGT 1 cut(s) 355
BstBAI YACGTR 1 cut(s) 148
BstC8I GCNNGC 2 cut(s) 171, 552
BstDEI CTNAG 4 cut(s) 323, 467, 491, 576
BstDSI CCRYGG 1 cut(s) 537
BstF5I GGATG 1 cut(s) 68
BstFNI CGCG 1 cut(s) 248
BstKTI GATC 1 cut(s) 490
BstMBI GATC 1 cut(s) 487
BstNI CCWGG 3 cut(s) 257, 263, 377
BstSCI CCNGG 4 cut(s) 255, 261, 309, 375
BstSLI GKGCMC 2 cut(s) 232, 504
BstUI CGCG 1 cut(s) 248
BstV1I GCAGC 1 cut(s) 270
BstV2I GAAGAC 1 cut(s) 205
Bsu36I CCTNAGG 1 cut(s) 323
BsuRI GGCC 4 cut(s) 5, 230, 251, 375
BtgI CCRYGG 1 cut(s) 537
BtsCI GGATG 1 cut(s) 68
BveI ACCTGC 1 cut(s) 351
Cac8I GCNNGC 2 cut(s) 171, 552
Cfr13I GGNCC 4 cut(s) 228, 229, 259, 373
CsiI ACCWGGT 1 cut(s) 255
Csp6I GTAC 2 cut(s) 328, 397
CviAII CATG 1 cut(s) 538
CviQI GTAC 2 cut(s) 328, 397
DdeI CTNAG 4 cut(s) 323, 467, 491, 576
DpnI GATC 1 cut(s) 489
DpnII GATC 1 cut(s) 487
EaeI YGGCCR 1 cut(s) 249
EciI GGCGGA 1 cut(s) 47
Eco130I CCWWGG 2 cut(s) 480, 537
Eco24I GRGCYC 1 cut(s) 232
Eco32I GATATC 1 cut(s) 360
Eco47I GGWCC 1 cut(s) 259
Eco72I CACGTG 1 cut(s) 148
Eco81I CCTNAGG 1 cut(s) 323
EcoO109I RGGNCCY 1 cut(s) 228
EcoRII CCWGG 3 cut(s) 255, 261, 375
EcoRV GATATC 1 cut(s) 360
EcoT14I CCWWGG 2 cut(s) 480, 537
EcoT38I GRGCYC 1 cut(s) 232
ErhI CCWWGG 2 cut(s) 480, 537
FaeI CATG 1 cut(s) 541
FaiI YATR 2 cut(s) 53, 539
FalI AAGNNNNNCTT 4 cut(s) 65, 97, 515, 547
FaqI GGGAC 1 cut(s) 378
FatI CATG 1 cut(s) 537
FauI CCCGC 3 cut(s) 178, 218, 339
Fnu4HI GCNGC 3 cut(s) 249, 284, 300
FokI GGATG 1 cut(s) 55
FriOI GRGCYC 1 cut(s) 232
Fsp4HI GCNGC 3 cut(s) 249, 284, 300
GluI GCNGC 3 cut(s) 249, 284, 300
HaeIII GGCC 4 cut(s) 5, 230, 251, 375
HapII CCGG 1 cut(s) 310
Hin1II CATG 1 cut(s) 541
HinfI GANTC 2 cut(s) 141, 206
HpaII CCGG 1 cut(s) 310
HphI GGTGA 7 cut(s) 15, 127, 328, 361, 367, 454, 461
Hpy166II GTNNAC 2 cut(s) 153, 336
Hpy188I TCNGA 3 cut(s) 205, 470, 512
Hpy188III TCNNGA 2 cut(s) 322, 363
Hpy8I GTNNAC 2 cut(s) 153, 336
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4IV ACGT 4 cut(s) 147, 293, 414, 430
HpyF3I CTNAG 4 cut(s) 323, 467, 491, 576
HpySE526I ACGT 4 cut(s) 147, 293, 414, 430
Hsp92II CATG 1 cut(s) 541
Kzo9I GATC 1 cut(s) 487
LmnI GCTCC 1 cut(s) 81
Lsp1109I GCAGC 1 cut(s) 270
MabI ACCWGGT 1 cut(s) 255
MaeII ACGT 4 cut(s) 147, 293, 414, 430
MaeIII GTNAC 2 cut(s) 349, 386
MalI GATC 1 cut(s) 489
MboI GATC 1 cut(s) 487
MboII GAAGA 2 cut(s) 205, 208
MhlI GDGCHC 2 cut(s) 232, 504
MluCI AATT 1 cut(s) 15
MlyI GAGTC 2 cut(s) 135, 215
MnlI CCTC 8 cut(s) 16, 22, 58, 211, 254, 287, 318, 476
MseI TTAA 1 cut(s) 561
MspI CCGG 1 cut(s) 310
MspR9I CCNGG 4 cut(s) 257, 263, 311, 377
MvaI CCWGG 3 cut(s) 257, 263, 377
MvnI CGCG 1 cut(s) 248
NciI CCSGG 1 cut(s) 311
NcoI CCATGG 1 cut(s) 537
NdeII GATC 1 cut(s) 487
NlaIII CATG 1 cut(s) 541
NlaIV GGNNCC 4 cut(s) 229, 230, 426, 478
NmuCI GTSAC 2 cut(s) 349, 386
PkrI GCNGC 3 cut(s) 250, 285, 301
PleI GAGTC 2 cut(s) 135, 214
PmaCI CACGTG 1 cut(s) 148
PmlI CACGTG 1 cut(s) 148
PpsI GAGTC 2 cut(s) 135, 214
Ppu21I YACGTR 1 cut(s) 148
Psp1406I AACGTT 1 cut(s) 293
Psp6I CCWGG 3 cut(s) 255, 261, 375
PspCI CACGTG 1 cut(s) 148
PspGI CCWGG 3 cut(s) 255, 261, 375
PspN4I GGNNCC 4 cut(s) 229, 230, 426, 478
PspOMI GGGCCC 1 cut(s) 228
PspPI GGNCC 4 cut(s) 228, 229, 259, 373
RsaI GTAC 2 cut(s) 329, 398
RsaNI GTAC 2 cut(s) 328, 397
SaqAI TTAA 1 cut(s) 561
SatI GCNGC 3 cut(s) 249, 284, 300
Sau3AI GATC 1 cut(s) 487
Sau96I GGNCC 4 cut(s) 228, 229, 259, 373
SchI GAGTC 2 cut(s) 135, 215
ScrFI CCNGG 4 cut(s) 257, 263, 311, 377
SduI GDGCHC 2 cut(s) 232, 504
SexAI ACCWGGT 1 cut(s) 255
SinI GGWCC 1 cut(s) 259
Sse9I AATT 1 cut(s) 15
SsiI CCGC 7 cut(s) 58, 171, 183, 225, 248, 300, 346
StyD4I CCNGG 4 cut(s) 255, 261, 309, 375
StyI CCWWGG 2 cut(s) 480, 537
TaaI ACNGT 1 cut(s) 355
TaiI ACGT 4 cut(s) 150, 296, 417, 433
TaqI TCGA 2 cut(s) 219, 486
TasI AATT 1 cut(s) 15
TauI GCSGC 2 cut(s) 251, 302
Tru1I TTAA 1 cut(s) 561
Tru9I TTAA 1 cut(s) 561
TseFI GTSAC 2 cut(s) 349, 386
TseI GCWGC 1 cut(s) 283
Tsp45I GTSAC 2 cut(s) 349, 386
TspDTI ATGAA 1 cut(s) 424
TspGWI ACGGA 1 cut(s) 199
VpaK11BI GGWCC 1 cut(s) 259
XcmI CCANNNNNNNNNTGG 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.