RLG00000006201

Bacterial PH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0015409
Physical Location & Seq
Reverse (-)
5191227 .. 5191808
582 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006201

Sequence Viewer

Length: 582 bp
ATGGCCTCCTCCACCTCAATTCTCTCACCCACCACCACCACCTCTATAGTCCGCCACCACTCCTCCAAGCTCCCCTTCCCTTACTCCACCAAACACATTTCCACTACTTTCTCTAACAACAGACCACTCACCAGACTCCACGTGTCCACCCCGACCAACAAGCCCGCCAACAACACCGCCAACAAGAAACCCACCTCGGAGACCGTCTTCTTCGACGGGGGGGCCCACTACGGCGACCTCGCGGCCAACCTCGTCTTGGGCTTCACTCTCCTCTGGCTGCCCCTAACGTTAGCCGCCGTGTTCCGGGCGTTTTTCCTGAGGTACAGGTTCACCAACCTGCGGGTGACGGTGATATCGGGACTGACGGGCCAGGACAGGAGTGACTTCTCGTACAAGGTCATCAAGGACGTTCAGGTGGTGCCACGTTTCATCGGCGAATGGGGTGATATTATCATCACCCTCAGAGATGGCACCAAGGTCGATCTTAGGAGTGTGCCTAAGTTCAGAGAGATTGCCAAGTATTGCTTATCCATGGCTGATAAGCCTGCCGTGGTTAAAGAAACAGGAACTAAGGGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bPH_2

Protein Analysis

194

Amino Acids

21.44

Weight (kDa)

10.09

Isoelectric Point (pI)

34.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bPH_2 PF03703 105 - 175 4.5e-13 Bacterial PH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14345
fragaria_vesca FvH4_4g31650
malus_domestica MD13G1074900.v1.1
prunus_persica Prupe.1G271300_v2.0.a1
pyrus_communis pycom13g06670
rosa_chinensis RchiOBHm_Chr4g0440151
rosa_laevigata RLG00000006201
rosa_multiflora Rmu_co8332745.1_g000001 Rmu_sc0001685.1_g000020
rosa_roxburghii Rroxscaffold_5G00381080
rosa_rugosa Rorug04G0324800
rosa_samantha Rh4AG375600 Rh4BG388000 Rh4CG402600 Rh4DG382200
rosa_wichuraiana Rw4G032140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 345
AccB1I GGYRCC 2 cut(s) 418, 470
AccII CGCG 1 cut(s) 242
AciI CCGC 6 cut(s) 52, 165, 177, 242, 294, 340
AclI AACGTT 1 cut(s) 287
AcoI YGGCCR 1 cut(s) 243
AcvI CACGTG 1 cut(s) 142
AfaI GTAC 2 cut(s) 323, 392
AfiI CCNNNNNNNGG 3 cut(s) 256, 303, 339
AflIII ACRYGT 1 cut(s) 141
AjnI CCWGG 1 cut(s) 369
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 194
AoxI GGCC 4 cut(s) 3, 222, 243, 367
ApaI GGGCCC 1 cut(s) 226
ApeKI GCWGC 1 cut(s) 277
AspS9I GGNCC 3 cut(s) 222, 223, 367
AsuC2I CCSGG 1 cut(s) 305
AsuHPI GGTGA 7 cut(s) 18, 121, 322, 355, 361, 448, 455
AxyI CCTNAGG 1 cut(s) 317
BaeGI GKGCMC 1 cut(s) 226
BanI GGYRCC 2 cut(s) 418, 470
BanII GRGCYC 1 cut(s) 226
BbrPI CACGTG 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 199
BbvI GCAGC 1 cut(s) 264
BccI CCATC 1 cut(s) 461
BceAI ACGGC 3 cut(s) 247, 281, 533
BcgI CGANNNNNNTGC 2 cut(s) 460, 494
BciT130I CCWGG 1 cut(s) 371
BcnI CCSGG 1 cut(s) 305
BcoDI GTCTC 1 cut(s) 194
BfmI CTRYAG 1 cut(s) 45
BfuAI ACCTGC 1 cut(s) 345
BisI GCNGC 3 cut(s) 243, 278, 294
BlsI GCNGC 3 cut(s) 244, 279, 295
Bme1390I CCNGG 2 cut(s) 305, 371
BmgT120I GGNCC 3 cut(s) 222, 223, 367
BmiI GGNNCC 4 cut(s) 223, 224, 420, 472
BmrFI CCNGG 2 cut(s) 305, 371
BpiI GAAGAC 1 cut(s) 199
BpuMI CCSGG 1 cut(s) 305
BsaAI YACGTR 1 cut(s) 142
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 4 cut(s) 195, 474, 531, 549
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 3 cut(s) 256, 303, 339
Bse21I CCTNAGG 1 cut(s) 317
BseBI CCWGG 1 cut(s) 371
BseDI CCNNGG 4 cut(s) 195, 474, 531, 549
BseLI CCNNNNNNNGG 3 cut(s) 256, 303, 339
BseMII CTCAG 2 cut(s) 308, 475
BseRI GAGGAG 2 cut(s) 52, 260
BseSI GKGCMC 1 cut(s) 226
BseXI GCAGC 1 cut(s) 264
Bsh1236I CGCG 1 cut(s) 242
BshFI GGCC 4 cut(s) 5, 224, 245, 369
BshNI GGYRCC 2 cut(s) 418, 470
BsiSI CCGG 1 cut(s) 304
BslFI GGGAC 1 cut(s) 372
BslI CCNNNNNNNGG 3 cut(s) 256, 303, 339
BsmAI GTCTC 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 372
BsnI GGCC 4 cut(s) 5, 224, 245, 369
Bso31I GGTCTC 1 cut(s) 194
Bsp120I GGGCCC 1 cut(s) 222
Bsp1286I GDGCHC 1 cut(s) 226
Bsp143I GATC 1 cut(s) 481
Bsp19I CCATGG 1 cut(s) 531
BspACI CCGC 6 cut(s) 52, 165, 177, 242, 294, 340
BspANI GGCC 4 cut(s) 5, 224, 245, 369
BspCNI CTCAG 2 cut(s) 309, 474
BspFNI CGCG 1 cut(s) 242
BspLI GGNNCC 4 cut(s) 223, 224, 420, 472
BspMI ACCTGC 1 cut(s) 345
BspT107I GGYRCC 2 cut(s) 418, 470
BspTNI GGTCTC 1 cut(s) 194
BssECI CCNNGG 4 cut(s) 195, 474, 531, 549
BssMI GATC 1 cut(s) 481
BssT1I CCWWGG 2 cut(s) 474, 531
Bst2UI CCWGG 1 cut(s) 371
Bst4CI ACNGT 2 cut(s) 205, 349
BstBAI YACGTR 1 cut(s) 142
BstC8I GCNNGC 2 cut(s) 165, 546
BstDEI CTNAG 5 cut(s) 317, 461, 485, 498, 570
BstDSI CCRYGG 2 cut(s) 531, 549
BstFNI CGCG 1 cut(s) 242
BstKTI GATC 1 cut(s) 484
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 1 cut(s) 481
BstNI CCWGG 1 cut(s) 371
BstSCI CCNGG 2 cut(s) 303, 369
BstSFI CTRYAG 1 cut(s) 45
BstSLI GKGCMC 1 cut(s) 226
BstUI CGCG 1 cut(s) 242
BstV1I GCAGC 1 cut(s) 264
BstV2I GAAGAC 1 cut(s) 199
Bsu36I CCTNAGG 1 cut(s) 317
BsuRI GGCC 4 cut(s) 5, 224, 245, 369
BtgI CCRYGG 2 cut(s) 531, 549
BveI ACCTGC 1 cut(s) 345
Cac8I GCNNGC 2 cut(s) 165, 546
Cfr13I GGNCC 3 cut(s) 222, 223, 367
Csp6I GTAC 2 cut(s) 322, 391
CviAII CATG 1 cut(s) 532
CviQI GTAC 2 cut(s) 322, 391
DdeI CTNAG 5 cut(s) 317, 461, 485, 498, 570
DpnI GATC 1 cut(s) 483
DpnII GATC 1 cut(s) 481
EaeI YGGCCR 1 cut(s) 243
EciI GGCGGA 1 cut(s) 41
Eco130I CCWWGG 2 cut(s) 474, 531
Eco24I GRGCYC 1 cut(s) 226
Eco31I GGTCTC 1 cut(s) 194
Eco32I GATATC 1 cut(s) 354
Eco72I CACGTG 1 cut(s) 142
Eco81I CCTNAGG 1 cut(s) 317
EcoO109I RGGNCCY 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 369
EcoRV GATATC 1 cut(s) 354
EcoT14I CCWWGG 2 cut(s) 474, 531
EcoT38I GRGCYC 1 cut(s) 226
ErhI CCWWGG 2 cut(s) 474, 531
FaeI CATG 1 cut(s) 535
FaiI YATR 2 cut(s) 47, 533
FalI AAGNNNNNCTT 4 cut(s) 59, 91, 509, 541
FaqI GGGAC 1 cut(s) 372
FatI CATG 1 cut(s) 531
FauI CCCGC 2 cut(s) 172, 333
Fnu4HI GCNGC 3 cut(s) 243, 278, 294
FriOI GRGCYC 1 cut(s) 226
Fsp4HI GCNGC 3 cut(s) 243, 278, 294
GluI GCNGC 3 cut(s) 243, 278, 294
HaeIII GGCC 4 cut(s) 5, 224, 245, 369
HapII CCGG 1 cut(s) 304
Hin1II CATG 1 cut(s) 535
HinfI GANTC 1 cut(s) 135
HpaII CCGG 1 cut(s) 304
HphI GGTGA 7 cut(s) 18, 121, 322, 355, 361, 448, 455
Hpy166II GTNNAC 2 cut(s) 147, 330
Hpy188I TCNGA 3 cut(s) 199, 464, 506
Hpy188III TCNNGA 2 cut(s) 316, 357
Hpy8I GTNNAC 2 cut(s) 147, 330
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 85
HpyCH4III ACNGT 2 cut(s) 205, 349
HpyCH4IV ACGT 4 cut(s) 141, 287, 408, 424
HpyF3I CTNAG 5 cut(s) 317, 461, 485, 498, 570
HpySE526I ACGT 4 cut(s) 141, 287, 408, 424
Hsp92II CATG 1 cut(s) 535
Kzo9I GATC 1 cut(s) 481
LmnI GCTCC 1 cut(s) 75
Lsp1109I GCAGC 1 cut(s) 264
MaeII ACGT 4 cut(s) 141, 287, 408, 424
MaeIII GTNAC 2 cut(s) 343, 380
MalI GATC 1 cut(s) 483
MboI GATC 1 cut(s) 481
MboII GAAGA 2 cut(s) 199, 202
MhlI GDGCHC 1 cut(s) 226
MluCI AATT 1 cut(s) 18
MlyI GAGTC 1 cut(s) 129
MseI TTAA 1 cut(s) 555
MspI CCGG 1 cut(s) 304
MspR9I CCNGG 2 cut(s) 305, 371
MvaI CCWGG 1 cut(s) 371
MvnI CGCG 1 cut(s) 242
NciI CCSGG 1 cut(s) 305
NcoI CCATGG 1 cut(s) 531
NdeII GATC 1 cut(s) 481
NlaIII CATG 1 cut(s) 535
NlaIV GGNNCC 4 cut(s) 223, 224, 420, 472
NmuCI GTSAC 2 cut(s) 343, 380
PkrI GCNGC 3 cut(s) 244, 279, 295
PleI GAGTC 1 cut(s) 129
PmaCI CACGTG 1 cut(s) 142
PmlI CACGTG 1 cut(s) 142
PpsI GAGTC 1 cut(s) 129
Ppu21I YACGTR 1 cut(s) 142
Psp1406I AACGTT 1 cut(s) 287
Psp6I CCWGG 1 cut(s) 369
PspCI CACGTG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 369
PspN4I GGNNCC 4 cut(s) 223, 224, 420, 472
PspOMI GGGCCC 1 cut(s) 222
PspPI GGNCC 3 cut(s) 222, 223, 367
RsaI GTAC 2 cut(s) 323, 392
RsaNI GTAC 2 cut(s) 322, 391
SaqAI TTAA 1 cut(s) 555
SatI GCNGC 3 cut(s) 243, 278, 294
Sau3AI GATC 1 cut(s) 481
Sau96I GGNCC 3 cut(s) 222, 223, 367
SchI GAGTC 1 cut(s) 129
ScrFI CCNGG 2 cut(s) 305, 371
SduI GDGCHC 1 cut(s) 226
SfcI CTRYAG 1 cut(s) 45
Sse9I AATT 1 cut(s) 18
SsiI CCGC 6 cut(s) 52, 165, 177, 242, 294, 340
StyD4I CCNGG 2 cut(s) 303, 369
StyI CCWWGG 2 cut(s) 474, 531
TaaI ACNGT 2 cut(s) 205, 349
TaiI ACGT 4 cut(s) 144, 290, 411, 427
TaqI TCGA 2 cut(s) 213, 480
TasI AATT 1 cut(s) 18
TauI GCSGC 2 cut(s) 245, 296
Tru1I TTAA 1 cut(s) 555
Tru9I TTAA 1 cut(s) 555
TseFI GTSAC 2 cut(s) 343, 380
TseI GCWGC 1 cut(s) 277
Tsp45I GTSAC 2 cut(s) 343, 380
TspDTI ATGAA 1 cut(s) 418
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.