Rmu_co8332745.1_g000001

Bacterial PH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8332745.1
OG0015409
Physical Location & Seq
Reverse (-)
428 .. 981
554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8332745.1_g000001.1.cds

Sequence Viewer

Length: 554 bp
ccaccaccaccacctccatagtccgccaccactcatccaagctccccttcccttactccaccaaacccatttccaccactttctctaacaacagaccactcaccagactccacgtgtccaccccgaccaacaagcccgccaacaacaccgccaacaagaaacccacctcggagaccgtcttcttcgacggcggggcccactacggcgacctcgcggccaacctggtgctgggcttcactctcctctggctgcccctaacgttagccgccgtgttccgggcgtttttcctgaggtacaggttcaccaacctgcgggtgacggtgatatcgggactgacgggccaggacaggagtgacttctcgtacaaggtcatcaaggacgttcaggtggtgccacgtttcatcggcgagtggggtgatattatcatcaccctcagagacggcaccaaggtcgatcttagaagtgtgcctaagttcagagagattgccaagtattgcttatccatggctgataagcctgccgtggttaaagaaacaggaactaagggcttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bPH_2

Protein Analysis

183

Amino Acids

20.43

Weight (kDa)

10.09

Isoelectric Point (pI)

27.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14345
fragaria_vesca FvH4_4g31650
malus_domestica MD13G1074900.v1.1
prunus_persica Prupe.1G271300_v2.0.a1
pyrus_communis pycom13g06670
rosa_chinensis RchiOBHm_Chr4g0440151
rosa_laevigata RLG00000006201
rosa_multiflora Rmu_co8332745.1_g000001 Rmu_sc0001685.1_g000020
rosa_roxburghii Rroxscaffold_5G00381080
rosa_rugosa Rorug04G0324800
rosa_samantha Rh4AG375600 Rh4BG388000 Rh4CG402600 Rh4DG382200
rosa_wichuraiana Rw4G032140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 317
AccB1I GGYRCC 2 cut(s) 390, 442
AccII CGCG 1 cut(s) 214
AciI CCGC 7 cut(s) 24, 137, 149, 191, 214, 266, 312
AclI AACGTT 1 cut(s) 259
AcoI YGGCCR 1 cut(s) 215
AcvI CACGTG 1 cut(s) 114
AfaI GTAC 2 cut(s) 295, 364
AfiI CCNNNNNNNGG 3 cut(s) 228, 275, 311
AflIII ACRYGT 1 cut(s) 113
AjnI CCWGG 2 cut(s) 221, 341
AjuI GAANNNNNNNTTGG 2 cut(s) 31, 63
AluBI AGCT 1 cut(s) 42
AluI AGCT 1 cut(s) 42
Alw26I GTCTC 2 cut(s) 166, 431
AoxI GGCC 3 cut(s) 194, 215, 339
ApaI GGGCCC 1 cut(s) 198
ApeKI GCWGC 1 cut(s) 249
AspS9I GGNCC 3 cut(s) 194, 195, 339
AsuC2I CCSGG 1 cut(s) 277
AsuHPI GGTGA 6 cut(s) 93, 294, 327, 333, 420, 427
AxyI CCTNAGG 1 cut(s) 289
BaeGI GKGCMC 1 cut(s) 198
BanI GGYRCC 2 cut(s) 390, 442
BanII GRGCYC 1 cut(s) 198
BbrPI CACGTG 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 236
BceAI ACGGC 5 cut(s) 204, 219, 253, 456, 505
BcgI CGANNNNNNTGC 2 cut(s) 432, 466
BciT130I CCWGG 2 cut(s) 223, 343
BcnI CCSGG 1 cut(s) 277
BcoDI GTCTC 2 cut(s) 166, 431
BfuAI ACCTGC 1 cut(s) 317
BisI GCNGC 3 cut(s) 215, 250, 266
BlsI GCNGC 3 cut(s) 216, 251, 267
Bme1390I CCNGG 3 cut(s) 223, 277, 343
BmgT120I GGNCC 3 cut(s) 194, 195, 339
BmiI GGNNCC 4 cut(s) 195, 196, 392, 444
BmrFI CCNGG 3 cut(s) 223, 277, 343
BpiI GAAGAC 1 cut(s) 171
BpuMI CCSGG 1 cut(s) 277
BsaAI YACGTR 1 cut(s) 114
BsaI GGTCTC 1 cut(s) 166
BsaJI CCNNGG 4 cut(s) 167, 446, 503, 521
Bsc4I CCNNNNNNNGG 3 cut(s) 228, 275, 311
Bse21I CCTNAGG 1 cut(s) 289
BseBI CCWGG 2 cut(s) 223, 343
BseDI CCNNGG 4 cut(s) 167, 446, 503, 521
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 3 cut(s) 228, 275, 311
BseMII CTCAG 2 cut(s) 280, 447
BseRI GAGGAG 1 cut(s) 232
BseSI GKGCMC 1 cut(s) 198
BseXI GCAGC 1 cut(s) 236
BseYI CCCAGC 1 cut(s) 228
Bsh1236I CGCG 1 cut(s) 214
BshFI GGCC 3 cut(s) 196, 217, 341
BshNI GGYRCC 2 cut(s) 390, 442
BsiSI CCGG 1 cut(s) 276
BslFI GGGAC 1 cut(s) 344
BslI CCNNNNNNNGG 3 cut(s) 228, 275, 311
BsmAI GTCTC 2 cut(s) 166, 431
BsmBI CGTCTC 1 cut(s) 431
BsmFI GGGAC 1 cut(s) 344
BsnI GGCC 3 cut(s) 196, 217, 341
Bso31I GGTCTC 1 cut(s) 166
Bsp120I GGGCCC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 1 cut(s) 453
Bsp19I CCATGG 1 cut(s) 503
BspACI CCGC 7 cut(s) 24, 137, 149, 191, 214, 266, 312
BspANI GGCC 3 cut(s) 196, 217, 341
BspCNI CTCAG 2 cut(s) 281, 446
BspFNI CGCG 1 cut(s) 214
BspLI GGNNCC 4 cut(s) 195, 196, 392, 444
BspMI ACCTGC 1 cut(s) 317
BspT107I GGYRCC 2 cut(s) 390, 442
BspTNI GGTCTC 1 cut(s) 166
BssECI CCNNGG 4 cut(s) 167, 446, 503, 521
BssMI GATC 1 cut(s) 453
BssT1I CCWWGG 2 cut(s) 446, 503
Bst2UI CCWGG 2 cut(s) 223, 343
Bst4CI ACNGT 2 cut(s) 177, 321
BstBAI YACGTR 1 cut(s) 114
BstC8I GCNNGC 2 cut(s) 137, 518
BstDEI CTNAG 5 cut(s) 289, 433, 457, 470, 542
BstDSI CCRYGG 2 cut(s) 503, 521
BstF5I GGATG 1 cut(s) 34
BstFNI CGCG 1 cut(s) 214
BstKTI GATC 1 cut(s) 456
BstMAI GTCTC 2 cut(s) 166, 431
BstMBI GATC 1 cut(s) 453
BstNI CCWGG 2 cut(s) 223, 343
BstSCI CCNGG 3 cut(s) 221, 275, 341
BstSLI GKGCMC 1 cut(s) 198
BstUI CGCG 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 236
BstV2I GAAGAC 1 cut(s) 171
Bsu36I CCTNAGG 1 cut(s) 289
BsuRI GGCC 3 cut(s) 196, 217, 341
BtgI CCRYGG 2 cut(s) 503, 521
BtsCI GGATG 1 cut(s) 34
BveI ACCTGC 1 cut(s) 317
Cac8I GCNNGC 2 cut(s) 137, 518
Cfr13I GGNCC 3 cut(s) 194, 195, 339
CsiI ACCWGGT 1 cut(s) 221
Csp6I GTAC 2 cut(s) 294, 363
CviAII CATG 1 cut(s) 504
CviQI GTAC 2 cut(s) 294, 363
DdeI CTNAG 5 cut(s) 289, 433, 457, 470, 542
DpnI GATC 1 cut(s) 455
DpnII GATC 1 cut(s) 453
EaeI YGGCCR 1 cut(s) 215
EciI GGCGGA 1 cut(s) 13
Eco130I CCWWGG 2 cut(s) 446, 503
Eco24I GRGCYC 1 cut(s) 198
Eco31I GGTCTC 1 cut(s) 166
Eco32I GATATC 1 cut(s) 326
Eco72I CACGTG 1 cut(s) 114
Eco81I CCTNAGG 1 cut(s) 289
EcoO109I RGGNCCY 1 cut(s) 194
EcoRII CCWGG 2 cut(s) 221, 341
EcoRV GATATC 1 cut(s) 326
EcoT14I CCWWGG 2 cut(s) 446, 503
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 2 cut(s) 446, 503
Esp3I CGTCTC 1 cut(s) 431
FaeI CATG 1 cut(s) 507
FaiI YATR 2 cut(s) 19, 505
FalI AAGNNNNNCTT 4 cut(s) 31, 63, 481, 513
FaqI GGGAC 1 cut(s) 344
FatI CATG 1 cut(s) 503
FauI CCCGC 3 cut(s) 144, 184, 305
Fnu4HI GCNGC 3 cut(s) 215, 250, 266
FokI GGATG 1 cut(s) 21
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 3 cut(s) 215, 250, 266
GluI GCNGC 3 cut(s) 215, 250, 266
GsaI CCCAGC 1 cut(s) 232
HaeIII GGCC 3 cut(s) 196, 217, 341
HapII CCGG 1 cut(s) 276
Hin1II CATG 1 cut(s) 507
HinfI GANTC 1 cut(s) 107
HpaII CCGG 1 cut(s) 276
HphI GGTGA 6 cut(s) 93, 294, 327, 333, 420, 427
Hpy166II GTNNAC 2 cut(s) 119, 302
Hpy188I TCNGA 3 cut(s) 171, 436, 478
Hpy188III TCNNGA 2 cut(s) 288, 329
Hpy8I GTNNAC 2 cut(s) 119, 302
Hpy99I CGWCG 1 cut(s) 190
HpyAV CCTTC 1 cut(s) 57
HpyCH4III ACNGT 2 cut(s) 177, 321
HpyCH4IV ACGT 4 cut(s) 113, 259, 380, 396
HpyF3I CTNAG 5 cut(s) 289, 433, 457, 470, 542
HpySE526I ACGT 4 cut(s) 113, 259, 380, 396
Hsp92II CATG 1 cut(s) 507
Kzo9I GATC 1 cut(s) 453
LmnI GCTCC 1 cut(s) 47
Lsp1109I GCAGC 1 cut(s) 236
MabI ACCWGGT 1 cut(s) 221
MaeII ACGT 4 cut(s) 113, 259, 380, 396
MaeIII GTNAC 2 cut(s) 315, 352
MalI GATC 1 cut(s) 455
MboI GATC 1 cut(s) 453
MboII GAAGA 2 cut(s) 171, 174
MhlI GDGCHC 1 cut(s) 198
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 6 cut(s) 24, 177, 220, 253, 284, 442
MseI TTAA 1 cut(s) 527
MspI CCGG 1 cut(s) 276
MspR9I CCNGG 3 cut(s) 223, 277, 343
MvaI CCWGG 2 cut(s) 223, 343
MvnI CGCG 1 cut(s) 214
NciI CCSGG 1 cut(s) 277
NcoI CCATGG 1 cut(s) 503
NdeII GATC 1 cut(s) 453
NlaIII CATG 1 cut(s) 507
NlaIV GGNNCC 4 cut(s) 195, 196, 392, 444
NmuCI GTSAC 2 cut(s) 315, 352
PkrI GCNGC 3 cut(s) 216, 251, 267
PleI GAGTC 1 cut(s) 101
PmaCI CACGTG 1 cut(s) 114
PmlI CACGTG 1 cut(s) 114
PpsI GAGTC 1 cut(s) 101
Ppu21I YACGTR 1 cut(s) 114
Psp1406I AACGTT 1 cut(s) 259
Psp6I CCWGG 2 cut(s) 221, 341
PspCI CACGTG 1 cut(s) 114
PspFI CCCAGC 1 cut(s) 228
PspGI CCWGG 2 cut(s) 221, 341
PspN4I GGNNCC 4 cut(s) 195, 196, 392, 444
PspOMI GGGCCC 1 cut(s) 194
PspPI GGNCC 3 cut(s) 194, 195, 339
RsaI GTAC 2 cut(s) 295, 364
RsaNI GTAC 2 cut(s) 294, 363
SaqAI TTAA 1 cut(s) 527
SatI GCNGC 3 cut(s) 215, 250, 266
Sau3AI GATC 1 cut(s) 453
Sau96I GGNCC 3 cut(s) 194, 195, 339
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 3 cut(s) 223, 277, 343
SduI GDGCHC 1 cut(s) 198
SexAI ACCWGGT 1 cut(s) 221
SsiI CCGC 7 cut(s) 24, 137, 149, 191, 214, 266, 312
StyD4I CCNGG 3 cut(s) 221, 275, 341
StyI CCWWGG 2 cut(s) 446, 503
TaaI ACNGT 2 cut(s) 177, 321
TaiI ACGT 4 cut(s) 116, 262, 383, 399
TaqI TCGA 2 cut(s) 185, 452
TauI GCSGC 2 cut(s) 217, 268
Tru1I TTAA 1 cut(s) 527
Tru9I TTAA 1 cut(s) 527
TseFI GTSAC 2 cut(s) 315, 352
TseI GCWGC 1 cut(s) 249
Tsp45I GTSAC 2 cut(s) 315, 352
TspDTI ATGAA 1 cut(s) 390
XcmI CCANNNNNNNNNTGG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.