FvH4_4g31650

Bacterial PH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0015409
Physical Location & Seq
Forward (+)
30700688 .. 30701272
585 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g31650.t1

Sequence Viewer

Length: 585 bp
ATGGCCGCCTCCTCCTCCACCTCTATTCTCTCTCCCACCACCACCATAGTCCACCACCACTCCTCCAAGCTCCCCTTCACCTCCACCTCCACCACTACTACTTTCACCAACAACAGACCTCTCACCAGGCTCCACGTGTCCACCCCAACCAACAAGCCCGCCAACAACACCACCACCACCAGTACCAAGAAACCCACCTCGGAGACCGTCTTCTTCGACGGCGGGGCCCACTACGGCGACCTCGCCGCCAACCTCGTTCTCGGCTTCACTCTCCTGTGGCTTCCCCTAACGTTAGCCGCTGTCTTCCGGGCCTTCTTCCTTCGGTACAGGTTCACCAACCTGCGGGTGACGGTGATATCGGGACTGACGGGACAGGACAGGAGTGACTTCTCGTACAAGGTCATCAAGGACGTTCAGGTTGTGCCGCGTTTCATCGGCGAGTGGGGTGATATTATCATCACCCTCAGAGATGGCACCAAGGTGGATCTTAGGAGTGTGCCCAAGTTCAGAGAGATTGCCAAGTATTGCTTATCCATGGCTGAAAAGCCTGCCGTGGTTAAAGAAGCAGGAACCAAGGGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bPH_2

Protein Analysis

195

Amino Acids

21.36

Weight (kDa)

10.0

Isoelectric Point (pI)

30.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bPH_2 PF03703 106 - 176 4.5e-13 Bacterial PH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14345
fragaria_vesca FvH4_4g31650
malus_domestica MD13G1074900.v1.1
prunus_persica Prupe.1G271300_v2.0.a1
pyrus_communis pycom13g06670
rosa_chinensis RchiOBHm_Chr4g0440151
rosa_laevigata RLG00000006201
rosa_multiflora Rmu_co8332745.1_g000001 Rmu_sc0001685.1_g000020
rosa_roxburghii Rroxscaffold_5G00381080
rosa_rugosa Rorug04G0324800
rosa_samantha Rh4AG375600 Rh4BG388000 Rh4CG402600 Rh4DG382200
rosa_wichuraiana Rw4G032140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 348
AccB1I GGYRCC 1 cut(s) 473
AccII CGCG 1 cut(s) 427
AciI CCGC 7 cut(s) 6, 159, 222, 246, 297, 343, 425
AclI AACGTT 1 cut(s) 290
AclWI GGATC 1 cut(s) 492
AcoI YGGCCR 1 cut(s) 3
AcvI CACGTG 1 cut(s) 136
AfaI GTAC 3 cut(s) 184, 326, 395
AfiI CCNNNNNNNGG 1 cut(s) 342
AflIII ACRYGT 1 cut(s) 135
AjnI CCWGG 1 cut(s) 125
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AleI CACNNNNGTG 1 cut(s) 479
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 1 cut(s) 492
AoxI GGCC 3 cut(s) 3, 225, 309
ApaI GGGCCC 1 cut(s) 229
AspS9I GGNCC 3 cut(s) 225, 226, 309
AsuC2I CCSGG 1 cut(s) 308
AsuHPI GGTGA 8 cut(s) 70, 97, 115, 325, 358, 364, 451, 458
BaeGI GKGCMC 2 cut(s) 229, 501
BanI GGYRCC 1 cut(s) 473
BanII GRGCYC 1 cut(s) 229
BbrPI CACGTG 1 cut(s) 136
BbsI GAAGAC 2 cut(s) 202, 295
BccI CCATC 1 cut(s) 464
BceAI ACGGC 3 cut(s) 235, 250, 536
BciT130I CCWGG 1 cut(s) 127
BcnI CCSGG 1 cut(s) 308
BcoDI GTCTC 1 cut(s) 197
BfuAI ACCTGC 1 cut(s) 348
BisI GCNGC 4 cut(s) 6, 246, 297, 425
BlsI GCNGC 4 cut(s) 7, 247, 298, 426
Bme1390I CCNGG 2 cut(s) 127, 308
BmgT120I GGNCC 3 cut(s) 225, 226, 309
BmiI GGNNCC 5 cut(s) 131, 226, 227, 475, 571
BmrFI CCNGG 2 cut(s) 127, 308
BpiI GAAGAC 2 cut(s) 202, 295
BpuMI CCSGG 1 cut(s) 308
BsaAI YACGTR 1 cut(s) 136
BsaI GGTCTC 1 cut(s) 197
BsaJI CCNNGG 5 cut(s) 198, 477, 534, 552, 573
BsaXI ACNNNNNCTCC 4 cut(s) 44, 47, 74, 77
Bsc4I CCNNNNNNNGG 1 cut(s) 342
Bse1I ACTGG 1 cut(s) 180
BseBI CCWGG 1 cut(s) 127
BseDI CCNNGG 5 cut(s) 198, 477, 534, 552, 573
BseLI CCNNNNNNNGG 1 cut(s) 342
BseMII CTCAG 1 cut(s) 478
BseNI ACTGG 1 cut(s) 180
BseRI GAGGAG 2 cut(s) 4, 52
BseSI GKGCMC 2 cut(s) 229, 501
Bsh1236I CGCG 1 cut(s) 427
BshFI GGCC 3 cut(s) 5, 227, 311
BshNI GGYRCC 1 cut(s) 473
BsiSI CCGG 1 cut(s) 307
BslFI GGGAC 2 cut(s) 375, 384
BslI CCNNNNNNNGG 1 cut(s) 342
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 2 cut(s) 375, 384
BsnI GGCC 3 cut(s) 5, 227, 311
Bso31I GGTCTC 1 cut(s) 197
Bsp120I GGGCCC 1 cut(s) 225
Bsp1286I GDGCHC 2 cut(s) 229, 501
Bsp143I GATC 1 cut(s) 484
Bsp19I CCATGG 1 cut(s) 534
BspACI CCGC 7 cut(s) 6, 159, 222, 246, 297, 343, 425
BspANI GGCC 3 cut(s) 5, 227, 311
BspCNI CTCAG 1 cut(s) 477
BspFNI CGCG 1 cut(s) 427
BspLI GGNNCC 5 cut(s) 131, 226, 227, 475, 571
BspMI ACCTGC 1 cut(s) 348
BspPI GGATC 1 cut(s) 492
BspT107I GGYRCC 1 cut(s) 473
BspTNI GGTCTC 1 cut(s) 197
BsrI ACTGG 1 cut(s) 180
BssECI CCNNGG 5 cut(s) 198, 477, 534, 552, 573
BssMI GATC 1 cut(s) 484
BssT1I CCWWGG 3 cut(s) 477, 534, 573
Bst2UI CCWGG 1 cut(s) 127
Bst4CI ACNGT 2 cut(s) 208, 352
BstBAI YACGTR 1 cut(s) 136
BstC8I GCNNGC 2 cut(s) 159, 549
BstDEI CTNAG 2 cut(s) 464, 488
BstDSI CCRYGG 2 cut(s) 534, 552
BstFNI CGCG 1 cut(s) 427
BstKTI GATC 1 cut(s) 487
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 1 cut(s) 484
BstNI CCWGG 1 cut(s) 127
BstSCI CCNGG 2 cut(s) 125, 306
BstSLI GKGCMC 2 cut(s) 229, 501
BstUI CGCG 1 cut(s) 427
BstV2I GAAGAC 2 cut(s) 202, 295
BstX2I RGATCY 1 cut(s) 484
BstYI RGATCY 1 cut(s) 484
BsuRI GGCC 3 cut(s) 5, 227, 311
BtgI CCRYGG 2 cut(s) 534, 552
BveI ACCTGC 1 cut(s) 348
Cac8I GCNNGC 2 cut(s) 159, 549
Cfr13I GGNCC 3 cut(s) 225, 226, 309
Csp6I GTAC 3 cut(s) 183, 325, 394
CviAII CATG 1 cut(s) 535
CviQI GTAC 3 cut(s) 183, 325, 394
DdeI CTNAG 2 cut(s) 464, 488
DpnI GATC 1 cut(s) 486
DpnII GATC 1 cut(s) 484
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 3 cut(s) 477, 534, 573
Eco24I GRGCYC 1 cut(s) 229
Eco31I GGTCTC 1 cut(s) 197
Eco32I GATATC 1 cut(s) 357
Eco72I CACGTG 1 cut(s) 136
EcoO109I RGGNCCY 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 125
EcoRV GATATC 1 cut(s) 357
EcoT14I CCWWGG 3 cut(s) 477, 534, 573
EcoT38I GRGCYC 1 cut(s) 229
ErhI CCWWGG 3 cut(s) 477, 534, 573
FaeI CATG 1 cut(s) 538
FaiI YATR 2 cut(s) 47, 536
FalI AAGNNNNNCTT 4 cut(s) 59, 91, 512, 544
FaqI GGGAC 2 cut(s) 375, 384
FatI CATG 1 cut(s) 534
FauI CCCGC 3 cut(s) 166, 215, 336
Fnu4HI GCNGC 4 cut(s) 6, 246, 297, 425
FriOI GRGCYC 1 cut(s) 229
Fsp4HI GCNGC 4 cut(s) 6, 246, 297, 425
GluI GCNGC 4 cut(s) 6, 246, 297, 425
HaeIII GGCC 3 cut(s) 5, 227, 311
HapII CCGG 1 cut(s) 307
Hin1II CATG 1 cut(s) 538
HpaII CCGG 1 cut(s) 307
HphI GGTGA 8 cut(s) 70, 97, 115, 325, 358, 364, 451, 458
Hpy166II GTNNAC 3 cut(s) 52, 141, 333
Hpy188I TCNGA 3 cut(s) 202, 467, 509
Hpy188III TCNNGA 1 cut(s) 360
Hpy8I GTNNAC 3 cut(s) 52, 141, 333
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 3 cut(s) 85, 322, 329
HpyCH4III ACNGT 2 cut(s) 208, 352
HpyCH4IV ACGT 3 cut(s) 135, 290, 411
HpyF3I CTNAG 2 cut(s) 464, 488
HpySE526I ACGT 3 cut(s) 135, 290, 411
Hsp92II CATG 1 cut(s) 538
Kzo9I GATC 1 cut(s) 484
LmnI GCTCC 2 cut(s) 75, 135
MaeII ACGT 3 cut(s) 135, 290, 411
MaeIII GTNAC 2 cut(s) 346, 383
MalI GATC 1 cut(s) 486
MboI GATC 1 cut(s) 484
MboII GAAGA 4 cut(s) 202, 205, 295, 307
MflI RGATCY 1 cut(s) 484
MhlI GDGCHC 2 cut(s) 229, 501
MseI TTAA 1 cut(s) 558
MslI CAYNNNNRTG 1 cut(s) 479
MspA1I CMGCKG 1 cut(s) 299
MspI CCGG 1 cut(s) 307
MspR9I CCNGG 2 cut(s) 127, 308
MvaI CCWGG 1 cut(s) 127
MvnI CGCG 1 cut(s) 427
NciI CCSGG 1 cut(s) 308
NcoI CCATGG 1 cut(s) 534
NdeII GATC 1 cut(s) 484
NlaIII CATG 1 cut(s) 538
NlaIV GGNNCC 5 cut(s) 131, 226, 227, 475, 571
NmeAIII GCCGAG 1 cut(s) 240
NmuCI GTSAC 2 cut(s) 346, 383
OliI CACNNNNGTG 1 cut(s) 479
PkrI GCNGC 4 cut(s) 7, 247, 298, 426
PmaCI CACGTG 1 cut(s) 136
PmlI CACGTG 1 cut(s) 136
Ppu21I YACGTR 1 cut(s) 136
Psp1406I AACGTT 1 cut(s) 290
Psp6I CCWGG 1 cut(s) 125
PspCI CACGTG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 125
PspN4I GGNNCC 5 cut(s) 131, 226, 227, 475, 571
PspOMI GGGCCC 1 cut(s) 225
PspPI GGNCC 3 cut(s) 225, 226, 309
PsuI RGATCY 1 cut(s) 484
RsaI GTAC 3 cut(s) 184, 326, 395
RsaNI GTAC 3 cut(s) 183, 325, 394
RseI CAYNNNNRTG 1 cut(s) 479
SaqAI TTAA 1 cut(s) 558
SatI GCNGC 4 cut(s) 6, 246, 297, 425
Sau3AI GATC 1 cut(s) 484
Sau96I GGNCC 3 cut(s) 225, 226, 309
ScrFI CCNGG 2 cut(s) 127, 308
SduI GDGCHC 2 cut(s) 229, 501
SmiMI CAYNNNNRTG 1 cut(s) 479
SsiI CCGC 7 cut(s) 6, 159, 222, 246, 297, 343, 425
StyD4I CCNGG 2 cut(s) 125, 306
StyI CCWWGG 3 cut(s) 477, 534, 573
TaaI ACNGT 2 cut(s) 208, 352
TaiI ACGT 3 cut(s) 138, 293, 414
TaqI TCGA 1 cut(s) 216
TauI GCSGC 4 cut(s) 8, 248, 299, 427
Tru1I TTAA 1 cut(s) 558
Tru9I TTAA 1 cut(s) 558
TseFI GTSAC 2 cut(s) 346, 383
Tsp45I GTSAC 2 cut(s) 346, 383
TspDTI ATGAA 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.