Rh4AG375600

Bacterial PH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0015409
Physical Location & Seq
Forward (+)
68266811 .. 68268184
1374 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG375600.1

Sequence Viewer

Length: 597 bp
ATGGCCTCCTCCTCCTCCACCTCAATTCTCTCACCCACTACCACCACCACCACCACCTCCATAGTCCGCCACCACTCCTCCAAGCTCCCCTTCCCTTACTCCACCAAACCCATTTCCACTACTTTCTCTAACAACAGACCACTCACCAGACTCCACGTGTCCACCCCGACCAACAAGCCCGCCAATAACACCGCCAACAAGAAACCCGCCTCGGAGACCGTCTTCTTCGACGGCGGGGCCCACTACGGCGACCTCGCGGCCAACCTCGTCCTGGGCTTCACTCTCCTCTGGCTGCCCCTAACGTTAGCCGCCGTGTTCCGGGCGTTTTTCCTGAGGTACAGGTTCACCAACCTGCGGGTGACGGTGATATCGGGACTGACGGGCCAGGACAGGAGTGACTTCTCGTACAAGGTCATCAAGGACGTTCAGGTGGTGCCACGTTTCATCGGCGAGTGGGGTGATATTATCATCACCCTCAGAGATGGCACCAAGGTCGATCTTAGAAGTGTGCCCAAGTTCAGAGAGATTGCCAAGTATTGCTTATCCATGGCTGATAAGCCTGCCGTGGTTAAAGAAACAGGAACTAAGGGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bPH_2

Protein Analysis

198

Amino Acids

21.85

Weight (kDa)

10.09

Isoelectric Point (pI)

33.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bPH_2 PF03703 110 - 180 4.7e-13 Bacterial PH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14345
fragaria_vesca FvH4_4g31650
malus_domestica MD13G1074900.v1.1
prunus_persica Prupe.1G271300_v2.0.a1
pyrus_communis pycom13g06670
rosa_chinensis RchiOBHm_Chr4g0440151
rosa_laevigata RLG00000006201
rosa_multiflora Rmu_co8332745.1_g000001 Rmu_sc0001685.1_g000020
rosa_roxburghii Rroxscaffold_5G00381080
rosa_rugosa Rorug04G0324800
rosa_samantha Rh4AG375600 Rh4BG388000 Rh4CG402600 Rh4DG382200
rosa_wichuraiana Rw4G032140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 360
AccB1I GGYRCC 2 cut(s) 433, 485
AccII CGCG 1 cut(s) 257
AciI CCGC 8 cut(s) 67, 180, 192, 207, 234, 257, 309, 355
AclI AACGTT 1 cut(s) 302
AcoI YGGCCR 1 cut(s) 258
AcvI CACGTG 1 cut(s) 157
AfaI GTAC 2 cut(s) 338, 407
AfiI CCNNNNNNNGG 3 cut(s) 271, 318, 354
AflIII ACRYGT 1 cut(s) 156
AjnI CCWGG 2 cut(s) 270, 384
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
Alw26I GTCTC 1 cut(s) 209
AoxI GGCC 4 cut(s) 3, 237, 258, 382
ApaI GGGCCC 1 cut(s) 241
ApeKI GCWGC 1 cut(s) 292
AspS9I GGNCC 3 cut(s) 237, 238, 382
AsuC2I CCSGG 1 cut(s) 320
AsuHPI GGTGA 7 cut(s) 24, 136, 337, 370, 376, 463, 470
AxyI CCTNAGG 1 cut(s) 332
BaeGI GKGCMC 2 cut(s) 241, 513
BanI GGYRCC 2 cut(s) 433, 485
BanII GRGCYC 1 cut(s) 241
BbrPI CACGTG 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 214
BbvI GCAGC 1 cut(s) 279
BccI CCATC 1 cut(s) 476
BceAI ACGGC 4 cut(s) 247, 262, 296, 548
BcgI CGANNNNNNTGC 2 cut(s) 475, 509
BciT130I CCWGG 2 cut(s) 272, 386
BcnI CCSGG 1 cut(s) 320
BcoDI GTCTC 1 cut(s) 209
BfuAI ACCTGC 1 cut(s) 360
BisI GCNGC 3 cut(s) 258, 293, 309
BlsI GCNGC 3 cut(s) 259, 294, 310
Bme1390I CCNGG 3 cut(s) 272, 320, 386
BmgT120I GGNCC 3 cut(s) 237, 238, 382
BmiI GGNNCC 4 cut(s) 238, 239, 435, 487
BmrFI CCNGG 3 cut(s) 272, 320, 386
BpiI GAAGAC 1 cut(s) 214
BpuMI CCSGG 1 cut(s) 320
BsaAI YACGTR 1 cut(s) 157
BsaI GGTCTC 1 cut(s) 209
BsaJI CCNNGG 5 cut(s) 210, 271, 489, 546, 564
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bsc4I CCNNNNNNNGG 3 cut(s) 271, 318, 354
Bse21I CCTNAGG 1 cut(s) 332
BseBI CCWGG 2 cut(s) 272, 386
BseDI CCNNGG 5 cut(s) 210, 271, 489, 546, 564
BseLI CCNNNNNNNGG 3 cut(s) 271, 318, 354
BseMII CTCAG 2 cut(s) 323, 490
BseRI GAGGAG 3 cut(s) 4, 67, 275
BseSI GKGCMC 2 cut(s) 241, 513
BseXI GCAGC 1 cut(s) 279
Bsh1236I CGCG 1 cut(s) 257
BshFI GGCC 4 cut(s) 5, 239, 260, 384
BshNI GGYRCC 2 cut(s) 433, 485
BsiSI CCGG 1 cut(s) 319
BslFI GGGAC 1 cut(s) 387
BslI CCNNNNNNNGG 3 cut(s) 271, 318, 354
BsmAI GTCTC 1 cut(s) 209
BsmFI GGGAC 1 cut(s) 387
BsnI GGCC 4 cut(s) 5, 239, 260, 384
Bso31I GGTCTC 1 cut(s) 209
Bsp120I GGGCCC 1 cut(s) 237
Bsp1286I GDGCHC 2 cut(s) 241, 513
Bsp143I GATC 1 cut(s) 496
Bsp19I CCATGG 1 cut(s) 546
BspACI CCGC 8 cut(s) 67, 180, 192, 207, 234, 257, 309, 355
BspANI GGCC 4 cut(s) 5, 239, 260, 384
BspCNI CTCAG 2 cut(s) 324, 489
BspFNI CGCG 1 cut(s) 257
BspLI GGNNCC 4 cut(s) 238, 239, 435, 487
BspMI ACCTGC 1 cut(s) 360
BspT107I GGYRCC 2 cut(s) 433, 485
BspTNI GGTCTC 1 cut(s) 209
BssECI CCNNGG 5 cut(s) 210, 271, 489, 546, 564
BssMI GATC 1 cut(s) 496
BssT1I CCWWGG 2 cut(s) 489, 546
Bst2UI CCWGG 2 cut(s) 272, 386
Bst4CI ACNGT 2 cut(s) 220, 364
BstBAI YACGTR 1 cut(s) 157
BstC8I GCNNGC 2 cut(s) 180, 561
BstDEI CTNAG 4 cut(s) 332, 476, 500, 585
BstDSI CCRYGG 2 cut(s) 546, 564
BstFNI CGCG 1 cut(s) 257
BstKTI GATC 1 cut(s) 499
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 1 cut(s) 496
BstNI CCWGG 2 cut(s) 272, 386
BstSCI CCNGG 3 cut(s) 270, 318, 384
BstSLI GKGCMC 2 cut(s) 241, 513
BstUI CGCG 1 cut(s) 257
BstV1I GCAGC 1 cut(s) 279
BstV2I GAAGAC 1 cut(s) 214
Bsu36I CCTNAGG 1 cut(s) 332
BsuRI GGCC 4 cut(s) 5, 239, 260, 384
BtgI CCRYGG 2 cut(s) 546, 564
BveI ACCTGC 1 cut(s) 360
Cac8I GCNNGC 2 cut(s) 180, 561
Cfr13I GGNCC 3 cut(s) 237, 238, 382
Csp6I GTAC 2 cut(s) 337, 406
CviAII CATG 1 cut(s) 547
CviQI GTAC 2 cut(s) 337, 406
DdeI CTNAG 4 cut(s) 332, 476, 500, 585
DpnI GATC 1 cut(s) 498
DpnII GATC 1 cut(s) 496
EaeI YGGCCR 1 cut(s) 258
EciI GGCGGA 1 cut(s) 56
Eco130I CCWWGG 2 cut(s) 489, 546
Eco24I GRGCYC 1 cut(s) 241
Eco31I GGTCTC 1 cut(s) 209
Eco32I GATATC 1 cut(s) 369
Eco72I CACGTG 1 cut(s) 157
Eco81I CCTNAGG 1 cut(s) 332
EcoO109I RGGNCCY 1 cut(s) 237
EcoRII CCWGG 2 cut(s) 270, 384
EcoRV GATATC 1 cut(s) 369
EcoT14I CCWWGG 2 cut(s) 489, 546
EcoT38I GRGCYC 1 cut(s) 241
ErhI CCWWGG 2 cut(s) 489, 546
FaeI CATG 1 cut(s) 550
FaiI YATR 2 cut(s) 62, 548
FalI AAGNNNNNCTT 4 cut(s) 74, 106, 524, 556
FaqI GGGAC 1 cut(s) 387
FatI CATG 1 cut(s) 546
FauI CCCGC 4 cut(s) 187, 214, 227, 348
Fnu4HI GCNGC 3 cut(s) 258, 293, 309
FriOI GRGCYC 1 cut(s) 241
Fsp4HI GCNGC 3 cut(s) 258, 293, 309
GluI GCNGC 3 cut(s) 258, 293, 309
HaeIII GGCC 4 cut(s) 5, 239, 260, 384
HapII CCGG 1 cut(s) 319
Hin1II CATG 1 cut(s) 550
HinfI GANTC 1 cut(s) 150
HpaII CCGG 1 cut(s) 319
HphI GGTGA 7 cut(s) 24, 136, 337, 370, 376, 463, 470
Hpy166II GTNNAC 2 cut(s) 162, 345
Hpy188I TCNGA 3 cut(s) 214, 479, 521
Hpy188III TCNNGA 2 cut(s) 331, 372
Hpy8I GTNNAC 2 cut(s) 162, 345
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 1 cut(s) 100
HpyCH4III ACNGT 2 cut(s) 220, 364
HpyCH4IV ACGT 4 cut(s) 156, 302, 423, 439
HpyF3I CTNAG 4 cut(s) 332, 476, 500, 585
HpySE526I ACGT 4 cut(s) 156, 302, 423, 439
Hsp92II CATG 1 cut(s) 550
Kzo9I GATC 1 cut(s) 496
LmnI GCTCC 1 cut(s) 90
Lsp1109I GCAGC 1 cut(s) 279
MaeII ACGT 4 cut(s) 156, 302, 423, 439
MaeIII GTNAC 2 cut(s) 358, 395
MalI GATC 1 cut(s) 498
MboI GATC 1 cut(s) 496
MboII GAAGA 2 cut(s) 214, 217
MhlI GDGCHC 2 cut(s) 241, 513
MluCI AATT 1 cut(s) 24
MlyI GAGTC 1 cut(s) 144
MseI TTAA 1 cut(s) 570
MspI CCGG 1 cut(s) 319
MspR9I CCNGG 3 cut(s) 272, 320, 386
MvaI CCWGG 2 cut(s) 272, 386
MvnI CGCG 1 cut(s) 257
NciI CCSGG 1 cut(s) 320
NcoI CCATGG 1 cut(s) 546
NdeII GATC 1 cut(s) 496
NlaIII CATG 1 cut(s) 550
NlaIV GGNNCC 4 cut(s) 238, 239, 435, 487
NmuCI GTSAC 2 cut(s) 358, 395
PkrI GCNGC 3 cut(s) 259, 294, 310
PleI GAGTC 1 cut(s) 144
PmaCI CACGTG 1 cut(s) 157
PmlI CACGTG 1 cut(s) 157
PpsI GAGTC 1 cut(s) 144
Ppu21I YACGTR 1 cut(s) 157
Psp1406I AACGTT 1 cut(s) 302
Psp6I CCWGG 2 cut(s) 270, 384
PspCI CACGTG 1 cut(s) 157
PspGI CCWGG 2 cut(s) 270, 384
PspN4I GGNNCC 4 cut(s) 238, 239, 435, 487
PspOMI GGGCCC 1 cut(s) 237
PspPI GGNCC 3 cut(s) 237, 238, 382
RsaI GTAC 2 cut(s) 338, 407
RsaNI GTAC 2 cut(s) 337, 406
SaqAI TTAA 1 cut(s) 570
SatI GCNGC 3 cut(s) 258, 293, 309
Sau3AI GATC 1 cut(s) 496
Sau96I GGNCC 3 cut(s) 237, 238, 382
SchI GAGTC 1 cut(s) 144
ScrFI CCNGG 3 cut(s) 272, 320, 386
SduI GDGCHC 2 cut(s) 241, 513
Sse9I AATT 1 cut(s) 24
SsiI CCGC 8 cut(s) 67, 180, 192, 207, 234, 257, 309, 355
StyD4I CCNGG 3 cut(s) 270, 318, 384
StyI CCWWGG 2 cut(s) 489, 546
TaaI ACNGT 2 cut(s) 220, 364
TaiI ACGT 4 cut(s) 159, 305, 426, 442
TaqI TCGA 2 cut(s) 228, 495
TasI AATT 1 cut(s) 24
TauI GCSGC 2 cut(s) 260, 311
Tru1I TTAA 1 cut(s) 570
Tru9I TTAA 1 cut(s) 570
TseFI GTSAC 2 cut(s) 358, 395
TseI GCWGC 1 cut(s) 292
Tsp45I GTSAC 2 cut(s) 358, 395
TspDTI ATGAA 1 cut(s) 433
XcmI CCANNNNNNNNNTGG 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.