Rmu_sc0001685.1_g000020

Bacterial PH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001685.1
OG0015409
Physical Location & Seq
Forward (+)
101090 .. 101668
579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001685.1_g000020.1.cds

Sequence Viewer

Length: 579 bp
atggcctccacctcaattctctcacccaccaccaccacctccatagtccgccaccactcatccaagctccccttcccttactccaccaaacccatttccaccactttctctaacaacagaccactcaccagactccacgtgtccaccccgaccaacaagcccgccaacaacaccgccaacaagaaacccacctcggagaccgtcttcttcgacggcggggcccactacggcgacctcgcggccaacctggtgctgggcttcactctcctctggctgcccctaacgttagccgccgtgttccgggcgtttttcctgaggtacaggttcaccaacctgcgggtgacggtgatatcgggactgacgggccaggacaggagtgacttctcgtacaaggtcatcaaggacgttcaggtggtgccacgtttcatcggcgagtggggtgatattatcatcaccctcagagatggcaccaaggtcgatcttagaagtgtgcctaagttcagagagattgccaagtattgcttatccatggctgataagcctgccgtggttaaagaaacaggaactaagggcttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bPH_2

Protein Analysis

192

Amino Acids

21.32

Weight (kDa)

10.09

Isoelectric Point (pI)

30.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14345
fragaria_vesca FvH4_4g31650
malus_domestica MD13G1074900.v1.1
prunus_persica Prupe.1G271300_v2.0.a1
pyrus_communis pycom13g06670
rosa_chinensis RchiOBHm_Chr4g0440151
rosa_laevigata RLG00000006201
rosa_multiflora Rmu_co8332745.1_g000001 Rmu_sc0001685.1_g000020
rosa_roxburghii Rroxscaffold_5G00381080
rosa_rugosa Rorug04G0324800
rosa_samantha Rh4AG375600 Rh4BG388000 Rh4CG402600 Rh4DG382200
rosa_wichuraiana Rw4G032140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 342
AccB1I GGYRCC 2 cut(s) 415, 467
AccII CGCG 1 cut(s) 239
AciI CCGC 7 cut(s) 49, 162, 174, 216, 239, 291, 337
AclI AACGTT 1 cut(s) 284
AcoI YGGCCR 1 cut(s) 240
AcvI CACGTG 1 cut(s) 139
AfaI GTAC 2 cut(s) 320, 389
AfiI CCNNNNNNNGG 3 cut(s) 253, 300, 336
AflIII ACRYGT 1 cut(s) 138
AjnI CCWGG 2 cut(s) 246, 366
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
Alw26I GTCTC 1 cut(s) 191
AoxI GGCC 4 cut(s) 3, 219, 240, 364
ApaI GGGCCC 1 cut(s) 223
ApeKI GCWGC 1 cut(s) 274
AspS9I GGNCC 3 cut(s) 219, 220, 364
AsuC2I CCSGG 1 cut(s) 302
AsuHPI GGTGA 7 cut(s) 15, 118, 319, 352, 358, 445, 452
AxyI CCTNAGG 1 cut(s) 314
BaeGI GKGCMC 1 cut(s) 223
BanI GGYRCC 2 cut(s) 415, 467
BanII GRGCYC 1 cut(s) 223
BbrPI CACGTG 1 cut(s) 139
BbsI GAAGAC 1 cut(s) 196
BbvI GCAGC 1 cut(s) 261
BccI CCATC 1 cut(s) 458
BceAI ACGGC 4 cut(s) 229, 244, 278, 530
BcgI CGANNNNNNTGC 2 cut(s) 457, 491
BciT130I CCWGG 2 cut(s) 248, 368
BcnI CCSGG 1 cut(s) 302
BcoDI GTCTC 1 cut(s) 191
BfuAI ACCTGC 1 cut(s) 342
BisI GCNGC 3 cut(s) 240, 275, 291
BlsI GCNGC 3 cut(s) 241, 276, 292
Bme1390I CCNGG 3 cut(s) 248, 302, 368
BmgT120I GGNCC 3 cut(s) 219, 220, 364
BmiI GGNNCC 4 cut(s) 220, 221, 417, 469
BmrFI CCNGG 3 cut(s) 248, 302, 368
BpiI GAAGAC 1 cut(s) 196
BpuMI CCSGG 1 cut(s) 302
BsaAI YACGTR 1 cut(s) 139
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 4 cut(s) 192, 471, 528, 546
Bsc4I CCNNNNNNNGG 3 cut(s) 253, 300, 336
Bse21I CCTNAGG 1 cut(s) 314
BseBI CCWGG 2 cut(s) 248, 368
BseDI CCNNGG 4 cut(s) 192, 471, 528, 546
BseGI GGATG 1 cut(s) 59
BseLI CCNNNNNNNGG 3 cut(s) 253, 300, 336
BseMII CTCAG 2 cut(s) 305, 472
BseRI GAGGAG 1 cut(s) 257
BseSI GKGCMC 1 cut(s) 223
BseXI GCAGC 1 cut(s) 261
BseYI CCCAGC 1 cut(s) 253
Bsh1236I CGCG 1 cut(s) 239
BshFI GGCC 4 cut(s) 5, 221, 242, 366
BshNI GGYRCC 2 cut(s) 415, 467
BsiSI CCGG 1 cut(s) 301
BslFI GGGAC 1 cut(s) 369
BslI CCNNNNNNNGG 3 cut(s) 253, 300, 336
BsmAI GTCTC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 369
BsnI GGCC 4 cut(s) 5, 221, 242, 366
Bso31I GGTCTC 1 cut(s) 191
Bsp120I GGGCCC 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 223
Bsp143I GATC 1 cut(s) 478
Bsp19I CCATGG 1 cut(s) 528
BspACI CCGC 7 cut(s) 49, 162, 174, 216, 239, 291, 337
BspANI GGCC 4 cut(s) 5, 221, 242, 366
BspCNI CTCAG 2 cut(s) 306, 471
BspFNI CGCG 1 cut(s) 239
BspLI GGNNCC 4 cut(s) 220, 221, 417, 469
BspMI ACCTGC 1 cut(s) 342
BspT107I GGYRCC 2 cut(s) 415, 467
BspTNI GGTCTC 1 cut(s) 191
BssECI CCNNGG 4 cut(s) 192, 471, 528, 546
BssMI GATC 1 cut(s) 478
BssT1I CCWWGG 2 cut(s) 471, 528
Bst2UI CCWGG 2 cut(s) 248, 368
Bst4CI ACNGT 2 cut(s) 202, 346
BstBAI YACGTR 1 cut(s) 139
BstC8I GCNNGC 2 cut(s) 162, 543
BstDEI CTNAG 5 cut(s) 314, 458, 482, 495, 567
BstDSI CCRYGG 2 cut(s) 528, 546
BstF5I GGATG 1 cut(s) 59
BstFNI CGCG 1 cut(s) 239
BstKTI GATC 1 cut(s) 481
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 1 cut(s) 478
BstNI CCWGG 2 cut(s) 248, 368
BstSCI CCNGG 3 cut(s) 246, 300, 366
BstSLI GKGCMC 1 cut(s) 223
BstUI CGCG 1 cut(s) 239
BstV1I GCAGC 1 cut(s) 261
BstV2I GAAGAC 1 cut(s) 196
Bsu36I CCTNAGG 1 cut(s) 314
BsuRI GGCC 4 cut(s) 5, 221, 242, 366
BtgI CCRYGG 2 cut(s) 528, 546
BtsCI GGATG 1 cut(s) 59
BveI ACCTGC 1 cut(s) 342
Cac8I GCNNGC 2 cut(s) 162, 543
Cfr13I GGNCC 3 cut(s) 219, 220, 364
CsiI ACCWGGT 1 cut(s) 246
Csp6I GTAC 2 cut(s) 319, 388
CviAII CATG 1 cut(s) 529
CviQI GTAC 2 cut(s) 319, 388
DdeI CTNAG 5 cut(s) 314, 458, 482, 495, 567
DpnI GATC 1 cut(s) 480
DpnII GATC 1 cut(s) 478
EaeI YGGCCR 1 cut(s) 240
EciI GGCGGA 1 cut(s) 38
Eco130I CCWWGG 2 cut(s) 471, 528
Eco24I GRGCYC 1 cut(s) 223
Eco31I GGTCTC 1 cut(s) 191
Eco32I GATATC 1 cut(s) 351
Eco72I CACGTG 1 cut(s) 139
Eco81I CCTNAGG 1 cut(s) 314
EcoO109I RGGNCCY 1 cut(s) 219
EcoRII CCWGG 2 cut(s) 246, 366
EcoRV GATATC 1 cut(s) 351
EcoT14I CCWWGG 2 cut(s) 471, 528
EcoT38I GRGCYC 1 cut(s) 223
ErhI CCWWGG 2 cut(s) 471, 528
FaeI CATG 1 cut(s) 532
FaiI YATR 2 cut(s) 44, 530
FalI AAGNNNNNCTT 4 cut(s) 56, 88, 506, 538
FaqI GGGAC 1 cut(s) 369
FatI CATG 1 cut(s) 528
FauI CCCGC 3 cut(s) 169, 209, 330
Fnu4HI GCNGC 3 cut(s) 240, 275, 291
FokI GGATG 1 cut(s) 46
FriOI GRGCYC 1 cut(s) 223
Fsp4HI GCNGC 3 cut(s) 240, 275, 291
GluI GCNGC 3 cut(s) 240, 275, 291
GsaI CCCAGC 1 cut(s) 257
HaeIII GGCC 4 cut(s) 5, 221, 242, 366
HapII CCGG 1 cut(s) 301
Hin1II CATG 1 cut(s) 532
HinfI GANTC 1 cut(s) 132
HpaII CCGG 1 cut(s) 301
HphI GGTGA 7 cut(s) 15, 118, 319, 352, 358, 445, 452
Hpy166II GTNNAC 2 cut(s) 144, 327
Hpy188I TCNGA 3 cut(s) 196, 461, 503
Hpy188III TCNNGA 2 cut(s) 313, 354
Hpy8I GTNNAC 2 cut(s) 144, 327
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 2 cut(s) 202, 346
HpyCH4IV ACGT 4 cut(s) 138, 284, 405, 421
HpyF3I CTNAG 5 cut(s) 314, 458, 482, 495, 567
HpySE526I ACGT 4 cut(s) 138, 284, 405, 421
Hsp92II CATG 1 cut(s) 532
Kzo9I GATC 1 cut(s) 478
LmnI GCTCC 1 cut(s) 72
Lsp1109I GCAGC 1 cut(s) 261
MabI ACCWGGT 1 cut(s) 246
MaeII ACGT 4 cut(s) 138, 284, 405, 421
MaeIII GTNAC 2 cut(s) 340, 377
MalI GATC 1 cut(s) 480
MboI GATC 1 cut(s) 478
MboII GAAGA 2 cut(s) 196, 199
MhlI GDGCHC 1 cut(s) 223
MluCI AATT 1 cut(s) 15
MlyI GAGTC 1 cut(s) 126
MnlI CCTC 8 cut(s) 16, 22, 49, 202, 245, 278, 309, 467
MseI TTAA 1 cut(s) 552
MspI CCGG 1 cut(s) 301
MspR9I CCNGG 3 cut(s) 248, 302, 368
MvaI CCWGG 2 cut(s) 248, 368
MvnI CGCG 1 cut(s) 239
NciI CCSGG 1 cut(s) 302
NcoI CCATGG 1 cut(s) 528
NdeII GATC 1 cut(s) 478
NlaIII CATG 1 cut(s) 532
NlaIV GGNNCC 4 cut(s) 220, 221, 417, 469
NmuCI GTSAC 2 cut(s) 340, 377
PkrI GCNGC 3 cut(s) 241, 276, 292
PleI GAGTC 1 cut(s) 126
PmaCI CACGTG 1 cut(s) 139
PmlI CACGTG 1 cut(s) 139
PpsI GAGTC 1 cut(s) 126
Ppu21I YACGTR 1 cut(s) 139
Psp1406I AACGTT 1 cut(s) 284
Psp6I CCWGG 2 cut(s) 246, 366
PspCI CACGTG 1 cut(s) 139
PspFI CCCAGC 1 cut(s) 253
PspGI CCWGG 2 cut(s) 246, 366
PspN4I GGNNCC 4 cut(s) 220, 221, 417, 469
PspOMI GGGCCC 1 cut(s) 219
PspPI GGNCC 3 cut(s) 219, 220, 364
RsaI GTAC 2 cut(s) 320, 389
RsaNI GTAC 2 cut(s) 319, 388
SaqAI TTAA 1 cut(s) 552
SatI GCNGC 3 cut(s) 240, 275, 291
Sau3AI GATC 1 cut(s) 478
Sau96I GGNCC 3 cut(s) 219, 220, 364
SchI GAGTC 1 cut(s) 126
ScrFI CCNGG 3 cut(s) 248, 302, 368
SduI GDGCHC 1 cut(s) 223
SexAI ACCWGGT 1 cut(s) 246
Sse9I AATT 1 cut(s) 15
SsiI CCGC 7 cut(s) 49, 162, 174, 216, 239, 291, 337
StyD4I CCNGG 3 cut(s) 246, 300, 366
StyI CCWWGG 2 cut(s) 471, 528
TaaI ACNGT 2 cut(s) 202, 346
TaiI ACGT 4 cut(s) 141, 287, 408, 424
TaqI TCGA 2 cut(s) 210, 477
TasI AATT 1 cut(s) 15
TauI GCSGC 2 cut(s) 242, 293
Tru1I TTAA 1 cut(s) 552
Tru9I TTAA 1 cut(s) 552
TseFI GTSAC 2 cut(s) 340, 377
TseI GCWGC 1 cut(s) 274
Tsp45I GTSAC 2 cut(s) 340, 377
TspDTI ATGAA 1 cut(s) 415
XcmI CCANNNNNNNNNTGG 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.