Prupe.1G271300_v2.0.a1

Bacterial PH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015409
Physical Location & Seq
Reverse (-)
27835188 .. 27835894
707 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G271300.1

Sequence Viewer

Length: 609 bp
ATGGCCTCCACTCCAATTCTCTCTCCCACTCCCACAACCACCTCTTTAGTCCACCACCACCACCACCAATCTTTGCACCTCTCCTCCAAACTACCCTTTCCCACCAGACCCACTACTTGCAATAACAACAGACCACTCACCAGACTCCACGTGTCCACCCCAACAAACAAACCGAACACCACCACCACCACCACCACCACCACAACCTCCAAGAAACCCACGACGGAGACCATCTTCTTCGACGGCGGAGCCCACTACGGCGACCTGTTGGCCAACCTTATTCTGGGCTTCACTCTTCTCTGGCTGCCGTTAACTCTGGCCGCCGTTTTCAGGGCCTTCTTTTTGAGGTACAGGTTCACCAACCTGCGGGTGACGGTGATCTCGGGACTGACAGGTCAGGATAGGAGCGATTTCTCGTACAAAGTGATCAAGGATGTTCAGGTGGTGCCGCGTTTTATCGGTGAGTGGGGTGATATTATCATCACTCTGAGAGATGGTACGAAGGTGGACCTGAGGAGTGTGCCTAAGTTCAGAGAGATTGCCAAGTATTGCCTCTCGTTGGCTGATAAGCCTGCCGTTTTGAAGGAAAAAGGATCTAAAGGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bPH_2

Protein Analysis

203

Amino Acids

22.54

Weight (kDa)

10.05

Isoelectric Point (pI)

30.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14345
fragaria_vesca FvH4_4g31650
malus_domestica MD13G1074900.v1.1
prunus_persica Prupe.1G271300_v2.0.a1
pyrus_communis pycom13g06670
rosa_chinensis RchiOBHm_Chr4g0440151
rosa_laevigata RLG00000006201
rosa_multiflora Rmu_co8332745.1_g000001 Rmu_sc0001685.1_g000020
rosa_roxburghii Rroxscaffold_5G00381080
rosa_rugosa Rorug04G0324800
rosa_samantha Rh4AG375600 Rh4BG388000 Rh4CG402600 Rh4DG382200
rosa_wichuraiana Rw4G032140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 393
Acc36I ACCTGC 1 cut(s) 372
AccB1I GGYRCC 1 cut(s) 445
AccII CGCG 1 cut(s) 451
AciI CCGC 4 cut(s) 246, 321, 367, 449
AclWI GGATC 1 cut(s) 601
AcoI YGGCCR 2 cut(s) 270, 318
AcvI CACGTG 1 cut(s) 151
AfaI GTAC 3 cut(s) 350, 419, 499
AfiI CCNNNNNNNGG 4 cut(s) 283, 330, 366, 559
AflIII ACRYGT 1 cut(s) 150
AgsI TTSAA 1 cut(s) 583
Alw26I GTCTC 1 cut(s) 221
AlwI GGATC 1 cut(s) 601
Ama87I CYCGRG 1 cut(s) 382
AoxI GGCC 4 cut(s) 3, 270, 318, 333
ApeKI GCWGC 1 cut(s) 304
AspS9I GGNCC 2 cut(s) 333, 508
AsuHPI GGTGA 6 cut(s) 130, 349, 382, 388, 473, 482
AvaI CYCGRG 1 cut(s) 382
AvaII GGWCC 1 cut(s) 508
AxyI CCTNAGG 1 cut(s) 512
BaeI ACNNNNGTAYC 2 cut(s) 489, 522
BalI TGGCCA 1 cut(s) 272
BanI GGYRCC 1 cut(s) 445
BanII GRGCYC 1 cut(s) 253
BbrPI CACGTG 1 cut(s) 151
BbvI GCAGC 1 cut(s) 291
BccI CCATC 2 cut(s) 239, 488
BceAI ACGGC 5 cut(s) 259, 274, 292, 308, 560
BclI TGATCA 1 cut(s) 426
BcoDI GTCTC 1 cut(s) 221
BfuAI ACCTGC 1 cut(s) 372
BisI GCNGC 3 cut(s) 305, 321, 449
BlsI GCNGC 3 cut(s) 306, 322, 450
Bme18I GGWCC 1 cut(s) 508
BmeT110I CYCGRG 1 cut(s) 382
BmgT120I GGNCC 2 cut(s) 333, 508
BmiI GGNNCC 2 cut(s) 250, 447
BsaAI YACGTR 1 cut(s) 151
BsaI GGTCTC 1 cut(s) 221
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bsc4I CCNNNNNNNGG 4 cut(s) 283, 330, 366, 559
Bse21I CCTNAGG 1 cut(s) 512
BseGI GGATG 1 cut(s) 439
BseLI CCNNNNNNNGG 4 cut(s) 283, 330, 366, 559
BseMII CTCAG 2 cut(s) 479, 503
BseRI GAGGAG 2 cut(s) 73, 529
BseXI GCAGC 1 cut(s) 291
Bsh1236I CGCG 1 cut(s) 451
BshFI GGCC 4 cut(s) 5, 272, 320, 335
BshNI GGYRCC 1 cut(s) 445
BsiHKCI CYCGRG 1 cut(s) 382
BslFI GGGAC 1 cut(s) 399
BslI CCNNNNNNNGG 4 cut(s) 283, 330, 366, 559
BsmAI GTCTC 1 cut(s) 221
BsmFI GGGAC 1 cut(s) 399
BsnI GGCC 4 cut(s) 5, 272, 320, 335
Bso31I GGTCTC 1 cut(s) 221
BsoBI CYCGRG 1 cut(s) 382
Bsp1286I GDGCHC 1 cut(s) 253
Bsp143I GATC 3 cut(s) 378, 426, 593
BspACI CCGC 4 cut(s) 246, 321, 367, 449
BspANI GGCC 4 cut(s) 5, 272, 320, 335
BspCNI CTCAG 2 cut(s) 480, 504
BspFNI CGCG 1 cut(s) 451
BspLI GGNNCC 2 cut(s) 250, 447
BspMI ACCTGC 1 cut(s) 372
BspPI GGATC 1 cut(s) 601
BspT107I GGYRCC 1 cut(s) 445
BspTNI GGTCTC 1 cut(s) 221
BssMI GATC 3 cut(s) 378, 426, 593
Bst4CI ACNGT 1 cut(s) 376
Bst6I CTCTTC 1 cut(s) 300
BstBAI YACGTR 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 573
BstDEI CTNAG 3 cut(s) 488, 512, 525
BstF5I GGATG 1 cut(s) 439
BstFNI CGCG 1 cut(s) 451
BstKTI GATC 3 cut(s) 381, 429, 596
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 3 cut(s) 378, 426, 593
BstUI CGCG 1 cut(s) 451
BstV1I GCAGC 1 cut(s) 291
BstX2I RGATCY 1 cut(s) 593
BstYI RGATCY 1 cut(s) 593
Bsu36I CCTNAGG 1 cut(s) 512
BsuRI GGCC 4 cut(s) 5, 272, 320, 335
BtsCI GGATG 1 cut(s) 439
BveI ACCTGC 1 cut(s) 372
Cac8I GCNNGC 1 cut(s) 573
Cfr13I GGNCC 2 cut(s) 333, 508
Csp6I GTAC 3 cut(s) 349, 418, 498
CviQI GTAC 3 cut(s) 349, 418, 498
DdeI CTNAG 3 cut(s) 488, 512, 525
DpnI GATC 3 cut(s) 380, 428, 595
DpnII GATC 3 cut(s) 378, 426, 593
DrdI GACNNNNNNGTC 1 cut(s) 393
DseDI GACNNNNNNGTC 1 cut(s) 393
EaeI YGGCCR 2 cut(s) 270, 318
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
EciI GGCGGA 1 cut(s) 261
Eco24I GRGCYC 1 cut(s) 253
Eco31I GGTCTC 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 508
Eco72I CACGTG 1 cut(s) 151
Eco81I CCTNAGG 1 cut(s) 512
Eco88I CYCGRG 1 cut(s) 382
EcoO109I RGGNCCY 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 253
FaqI GGGAC 1 cut(s) 399
FauI CCCGC 1 cut(s) 360
FbaI TGATCA 1 cut(s) 426
Fnu4HI GCNGC 3 cut(s) 305, 321, 449
FokI GGATG 1 cut(s) 446
FriOI GRGCYC 1 cut(s) 253
Fsp4HI GCNGC 3 cut(s) 305, 321, 449
GluI GCNGC 3 cut(s) 305, 321, 449
HaeIII GGCC 4 cut(s) 5, 272, 320, 335
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HinfI GANTC 1 cut(s) 144
HpaI GTTAAC 1 cut(s) 312
HphI GGTGA 6 cut(s) 130, 349, 382, 388, 473, 482
Hpy166II GTNNAC 5 cut(s) 52, 156, 312, 357, 508
Hpy188I TCNGA 2 cut(s) 489, 533
Hpy188III TCNNGA 2 cut(s) 384, 398
Hpy8I GTNNAC 5 cut(s) 52, 156, 312, 357, 508
Hpy99I CGWCG 2 cut(s) 226, 245
HpyAV CCTTC 3 cut(s) 346, 496, 577
HpyCH4III ACNGT 1 cut(s) 376
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 2 cut(s) 76, 120
HpyF3I CTNAG 3 cut(s) 488, 512, 525
HpySE526I ACGT 1 cut(s) 150
Ksp22I TGATCA 1 cut(s) 426
KspAI GTTAAC 1 cut(s) 312
Kzo9I GATC 3 cut(s) 378, 426, 593
LmnI GCTCC 2 cut(s) 248, 405
Lsp1109I GCAGC 1 cut(s) 291
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 370
MalI GATC 3 cut(s) 380, 428, 595
MboI GATC 3 cut(s) 378, 426, 593
MboII GAAGA 3 cut(s) 226, 229, 287
MflI RGATCY 1 cut(s) 593
MhlI GDGCHC 1 cut(s) 253
MlsI TGGCCA 1 cut(s) 272
MluCI AATT 1 cut(s) 15
MluNI TGGCCA 1 cut(s) 272
MlyI GAGTC 1 cut(s) 138
MnlI CCTC 8 cut(s) 16, 52, 89, 94, 217, 339, 507, 563
Mox20I TGGCCA 1 cut(s) 272
MscI TGGCCA 1 cut(s) 272
MseI TTAA 2 cut(s) 311, 607
Msp20I TGGCCA 1 cut(s) 272
MvnI CGCG 1 cut(s) 451
NdeII GATC 3 cut(s) 378, 426, 593
NlaIV GGNNCC 2 cut(s) 250, 447
NmuCI GTSAC 1 cut(s) 370
PkrI GCNGC 3 cut(s) 306, 322, 450
PleI GAGTC 1 cut(s) 138
PmaCI CACGTG 1 cut(s) 151
PmlI CACGTG 1 cut(s) 151
PpsI GAGTC 1 cut(s) 138
Ppu21I YACGTR 1 cut(s) 151
PspCI CACGTG 1 cut(s) 151
PspN4I GGNNCC 2 cut(s) 250, 447
PspPI GGNCC 2 cut(s) 333, 508
PsuI RGATCY 1 cut(s) 593
RsaI GTAC 3 cut(s) 350, 419, 499
RsaNI GTAC 3 cut(s) 349, 418, 498
SaqAI TTAA 2 cut(s) 311, 607
SatI GCNGC 3 cut(s) 305, 321, 449
Sau3AI GATC 3 cut(s) 378, 426, 593
Sau96I GGNCC 2 cut(s) 333, 508
SchI GAGTC 1 cut(s) 138
SduI GDGCHC 1 cut(s) 253
SinI GGWCC 1 cut(s) 508
Sse9I AATT 1 cut(s) 15
SsiI CCGC 4 cut(s) 246, 321, 367, 449
TaaI ACNGT 1 cut(s) 376
TaiI ACGT 1 cut(s) 153
TaqI TCGA 1 cut(s) 240
TasI AATT 1 cut(s) 15
TauI GCSGC 2 cut(s) 323, 451
Tru1I TTAA 2 cut(s) 311, 607
Tru9I TTAA 2 cut(s) 311, 607
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 1 cut(s) 304
Tsp45I GTSAC 1 cut(s) 370
TspGWI ACGGA 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 508
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.