AT1G14630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009989
Physical Location & Seq
Forward (+)
5019800 .. 5021653
1854 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G14630.2

Sequence Viewer

Length: 681 bp
ATGAGTGAGCTTTCATACTCTCTCCCCTCTTGGGATCTCCATAACCTTGGATCACTCTTCAACCAAAACTTCAATCTAGATGCATGGGGGCTCATTGATGAATCGCCGGAGAATATATTCTGTTCACCGGAGATGGAAATCGGGGACGTTTCCACCGGATACCTTGAAGACGCACTCATTGAATTCAGTGGGAGAAGCAAACGGAGACGTCTCTCGTTCAACGGCGCCGAGGACAAACCAGATAACGATTTAGACCATTCTCAGAATCATTGGGGTCTGTCTGAGAATTATAGTTGCACGAGTAGTCAGTTTGCAGACGAATCTCCAAATTCTTCCATCAATATATGTTCTGAAGAAAAATCCTCAATTTCGTCGAGAAACTCTTTCGAACCATCCTCGTCCACGTCAAAAAAGAATGACTATGACGAGAAGAAGAGGGTGGTGTATCCATTTGGAGTGGTAAAACCAGGTGGTCGAGAAGAAGATATAACTCTAAATGACATTAATAAGAGGATTTTAATGCCATCGGCTAGGCCGGTTCGACATCCGGTTGGAGACTTTGCATGTCGTCCGTGTGTCTCTGCAGATGGACCGGGTCTATCAGGCAAAGCCGTGGTTGCATTCACGAAGATACAAACATTAGGGAGGGGCACAATTACTATTATAAGAACTAAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

24.98

Weight (kDa)

5.19

Isoelectric Point (pI)

66.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009989)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14630 AT1G14630 AT2G01990 AT2G01990
fragaria_vesca FvH4_4g35920
malus_domestica MD13G1013900.v1.1 MD16G1011100.v1.1
prunus_persica Prupe.1G339600_v2.0.a1 Prupe.1G339600_v2.0.a1
pyrus_communis pycom13g01180 pycom16g01090
rosa_chinensis RchiOBHm_Chr4g0445521
rosa_laevigata RLG00000005733
rosa_multiflora Rmu_ssc0000253.1_g000002
rosa_roxburghii Rroxscaffold_5G00386000
rosa_rugosa Rorug04G0362100
rosa_samantha Rh4AG423600 Rh4BG435600 Rh4CG450300 Rh4DG431900
rosa_wichuraiana Rw4G036310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 665
AatII GACGTC 1 cut(s) 211
AccB1I GGYRCC 1 cut(s) 224
AclWI GGATC 2 cut(s) 42, 58
AcsI RAATTY 2 cut(s) 182, 328
AcuI CTGAAG 1 cut(s) 372
AcyI GRCGYC 2 cut(s) 208, 225
AfiI CCNNNNNNNGG 1 cut(s) 31
AgsI TTSAA 5 cut(s) 61, 73, 167, 182, 220
AjiI CACGTC 1 cut(s) 405
AjnI CCWGG 1 cut(s) 466
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
Alw26I GTCTC 4 cut(s) 199, 215, 549, 583
AlwI GGATC 2 cut(s) 42, 58
AoxI GGCC 1 cut(s) 533
ApoI RAATTY 2 cut(s) 182, 328
AseI ATTAAT 1 cut(s) 504
Asp700I GAANNNNTTC 1 cut(s) 116
AspLEI GCGC 1 cut(s) 227
AspS9I GGNCC 1 cut(s) 590
AsuC2I CCSGG 1 cut(s) 594
AsuHPI GGTGA 1 cut(s) 117
AsuII TTCGAA 1 cut(s) 387
AvaII GGWCC 1 cut(s) 590
BaeGI GKGCMC 1 cut(s) 653
BanI GGYRCC 1 cut(s) 224
BanII GRGCYC 1 cut(s) 93
BauI CACGAG 1 cut(s) 298
BbsI GAAGAC 1 cut(s) 174
BccI CCATC 5 cut(s) 127, 344, 400, 532, 581
BceAI ACGGC 2 cut(s) 238, 596
BciT130I CCWGG 1 cut(s) 468
BciVI GTATCC 2 cut(s) 152, 456
BcnI CCSGG 1 cut(s) 594
BcoDI GTCTC 4 cut(s) 199, 215, 549, 583
BfaI CTAG 2 cut(s) 77, 531
BfmI CTRYAG 1 cut(s) 582
BfoI RGCGCY 1 cut(s) 228
BfuI GTATCC 2 cut(s) 152, 456
Bme1390I CCNGG 2 cut(s) 468, 594
Bme18I GGWCC 1 cut(s) 590
BmgBI CACGTC 1 cut(s) 405
BmgT120I GGNCC 1 cut(s) 590
BmiI GGNNCC 1 cut(s) 226
BmrFI CCNGG 2 cut(s) 468, 594
BmsI GCATC 1 cut(s) 70
BpiI GAAGAC 1 cut(s) 174
Bpu14I TTCGAA 1 cut(s) 387
BpuMI CCSGG 1 cut(s) 594
BsaBI GATNNNNATC 1 cut(s) 137
BsaHI GRCGYC 2 cut(s) 208, 225
BsaJI CCNNGG 3 cut(s) 46, 228, 612
BsaWI WCCGGW 3 cut(s) 127, 155, 547
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse118I RCCGGY 1 cut(s) 535
Bse8I GATNNNNATC 1 cut(s) 137
BseBI CCWGG 1 cut(s) 468
BseDI CCNNGG 3 cut(s) 46, 228, 612
BseGI GGATG 2 cut(s) 392, 544
BseJI GATNNNNATC 1 cut(s) 137
BseLI CCNNNNNNNGG 1 cut(s) 31
BseMII CTCAG 2 cut(s) 273, 275
BseSI GKGCMC 1 cut(s) 653
BshFI GGCC 1 cut(s) 535
BshNI GGYRCC 1 cut(s) 224
BsiSI CCGG 6 cut(s) 107, 128, 156, 536, 548, 593
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 31
BsmAI GTCTC 4 cut(s) 199, 215, 549, 583
BsmBI CGTCTC 2 cut(s) 199, 215
BsmFI GGGAC 1 cut(s) 158
BsmI GAATGC 1 cut(s) 620
BsnI GGCC 1 cut(s) 535
Bsp119I TTCGAA 1 cut(s) 387
Bsp1286I GDGCHC 2 cut(s) 93, 653
Bsp143I GATC 2 cut(s) 34, 50
BspANI GGCC 1 cut(s) 535
BspCNI CTCAG 2 cut(s) 274, 274
BspLI GGNNCC 1 cut(s) 226
BspMAI CTGCAG 1 cut(s) 586
BspPI GGATC 2 cut(s) 42, 58
BspT104I TTCGAA 1 cut(s) 387
BspT107I GGYRCC 1 cut(s) 224
BsrFI RCCGGY 1 cut(s) 535
BssAI RCCGGY 1 cut(s) 535
BssECI CCNNGG 3 cut(s) 46, 228, 612
BssMI GATC 2 cut(s) 34, 50
BssNI GRCGYC 2 cut(s) 208, 225
BssSI CACGAG 1 cut(s) 298
BssT1I CCWWGG 1 cut(s) 46
Bst2BI CACGAG 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 468
Bst6I CTCTTC 2 cut(s) 62, 428
BstACI GRCGYC 2 cut(s) 208, 225
BstBI TTCGAA 1 cut(s) 387
BstDEI CTNAG 3 cut(s) 261, 282, 672
BstDSI CCRYGG 1 cut(s) 612
BstF5I GGATG 2 cut(s) 392, 544
BstH2I RGCGCY 1 cut(s) 228
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 2 cut(s) 37, 53
BstMAI GTCTC 4 cut(s) 199, 215, 549, 583
BstMBI GATC 2 cut(s) 34, 50
BstMWI GCNNNNNNNGC 1 cut(s) 617
BstNI CCWGG 1 cut(s) 468
BstNSI RCATGY 1 cut(s) 567
BstSCI CCNGG 2 cut(s) 466, 592
BstSFI CTRYAG 1 cut(s) 582
BstSLI GKGCMC 1 cut(s) 653
BstV2I GAAGAC 1 cut(s) 174
BstX2I RGATCY 1 cut(s) 34
BstXI CCANNNNNNTGG 1 cut(s) 47
BstYI RGATCY 1 cut(s) 34
BsuI GTATCC 2 cut(s) 152, 456
BsuRI GGCC 1 cut(s) 535
BtgI CCRYGG 1 cut(s) 612
BtrI CACGTC 1 cut(s) 405
BtsCI GGATG 2 cut(s) 392, 544
BtsIMutI CAGTG 1 cut(s) 193
CfoI GCGC 1 cut(s) 227
Cfr10I RCCGGY 1 cut(s) 535
Cfr13I GGNCC 1 cut(s) 590
CseI GACGC 1 cut(s) 179
CsiI ACCWGGT 1 cut(s) 466
CviAII CATG 2 cut(s) 84, 564
CviJI RGCY 5 cut(s) 10, 91, 530, 535, 611
CviKI_1 RGCY 5 cut(s) 10, 91, 530, 535, 611
DdeI CTNAG 3 cut(s) 261, 282, 672
DinI GGCGCC 1 cut(s) 226
DpnI GATC 2 cut(s) 36, 52
DpnII GATC 2 cut(s) 34, 50
Eam1104I CTCTTC 2 cut(s) 62, 428
EarI CTCTTC 2 cut(s) 62, 428
Eco130I CCWWGG 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 590
Eco57I CTGAAG 1 cut(s) 372
EcoRI GAATTC 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 466
EcoT14I CCWWGG 1 cut(s) 46
EcoT22I ATGCAT 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 93
EgeI GGCGCC 1 cut(s) 226
EheI GGCGCC 1 cut(s) 226
ErhI CCWWGG 1 cut(s) 46
Esp3I CGTCTC 2 cut(s) 199, 215
FaeI CATG 2 cut(s) 87, 567
FaqI GGGAC 1 cut(s) 158
FatI CATG 2 cut(s) 83, 563
FokI GGATG 2 cut(s) 379, 531
FriOI GRGCYC 1 cut(s) 93
FspBI CTAG 2 cut(s) 77, 531
GlaI GCGC 1 cut(s) 226
HaeII RGCGCY 1 cut(s) 228
HaeIII GGCC 1 cut(s) 535
HapII CCGG 6 cut(s) 107, 128, 156, 536, 548, 593
HgaI GACGC 1 cut(s) 179
HhaI GCGC 1 cut(s) 227
Hin1I GRCGYC 2 cut(s) 208, 225
Hin1II CATG 2 cut(s) 87, 567
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HinfI GANTC 3 cut(s) 101, 265, 320
HpaII CCGG 6 cut(s) 107, 128, 156, 536, 548, 593
HphI GGTGA 1 cut(s) 117
Hpy166II GTNNAC 2 cut(s) 125, 402
Hpy188I TCNGA 3 cut(s) 264, 283, 352
Hpy188III TCNNGA 4 cut(s) 77, 375, 476, 625
Hpy8I GTNNAC 2 cut(s) 125, 402
Hpy99I CGWCG 1 cut(s) 376
HpyCH4IV ACGT 3 cut(s) 147, 208, 404
HpyCH4V TGCA 6 cut(s) 83, 297, 314, 563, 584, 620
HpyF10VI GCNNNNNNNGC 1 cut(s) 617
HpyF3I CTNAG 3 cut(s) 261, 282, 672
HpySE526I ACGT 3 cut(s) 147, 208, 404
Hsp92I GRCGYC 2 cut(s) 208, 225
Hsp92II CATG 2 cut(s) 87, 567
HspAI GCGC 1 cut(s) 225
KasI GGCGCC 1 cut(s) 224
Kzo9I GATC 2 cut(s) 34, 50
LweI GCATC 1 cut(s) 70
MabI ACCWGGT 1 cut(s) 466
MaeI CTAG 2 cut(s) 77, 531
MaeII ACGT 3 cut(s) 147, 208, 404
MalI GATC 2 cut(s) 36, 52
MboI GATC 2 cut(s) 34, 50
MboII GAAGA 9 cut(s) 49, 179, 324, 365, 442, 445, 491, 494, 640
MflI RGATCY 1 cut(s) 34
MhlI GDGCHC 2 cut(s) 93, 653
MluCI AATT 5 cut(s) 182, 286, 328, 366, 654
Mly113I GGCGCC 1 cut(s) 225
MmeI TCCRAC 1 cut(s) 532
MnlI CCTC 7 cut(s) 37, 223, 373, 406, 429, 504, 639
Mph1103I ATGCAT 1 cut(s) 85
MroXI GAANNNNTTC 1 cut(s) 116
MseI TTAA 2 cut(s) 504, 518
MspI CCGG 6 cut(s) 107, 128, 156, 536, 548, 593
MspR9I CCNGG 2 cut(s) 468, 594
Mva1269I GAATGC 1 cut(s) 620
MvaI CCWGG 1 cut(s) 468
MwoI GCNNNNNNNGC 1 cut(s) 617
NarI GGCGCC 1 cut(s) 225
NciI CCSGG 1 cut(s) 594
NdeII GATC 2 cut(s) 34, 50
NlaIII CATG 2 cut(s) 87, 567
NlaIV GGNNCC 1 cut(s) 226
NmeAIII GCCGAG 1 cut(s) 253
NsiI ATGCAT 1 cut(s) 85
NspI RCATGY 1 cut(s) 567
NspV TTCGAA 1 cut(s) 387
PctI GAATGC 1 cut(s) 620
PdmI GAANNNNTTC 1 cut(s) 116
PfeI GAWTC 3 cut(s) 101, 265, 320
PflFI GACNNNGTC 1 cut(s) 594
PluTI GGCGCC 1 cut(s) 228
PshBI ATTAAT 1 cut(s) 504
PsiI TTATAA 1 cut(s) 665
Psp6I CCWGG 1 cut(s) 466
PspGI CCWGG 1 cut(s) 466
PspN4I GGNNCC 1 cut(s) 226
PspPI GGNCC 1 cut(s) 590
PstI CTGCAG 1 cut(s) 586
PsuI RGATCY 1 cut(s) 34
PsyI GACNNNGTC 1 cut(s) 594
SaqAI TTAA 2 cut(s) 504, 518
Sau3AI GATC 2 cut(s) 34, 50
Sau96I GGNCC 1 cut(s) 590
ScrFI CCNGG 2 cut(s) 468, 594
SduI GDGCHC 2 cut(s) 93, 653
SetI ASST 7 cut(s) 12, 48, 150, 165, 211, 407, 472
SexAI ACCWGGT 1 cut(s) 466
SfaNI GCATC 1 cut(s) 70
SfcI CTRYAG 1 cut(s) 582
SfoI GGCGCC 1 cut(s) 226
SfuI TTCGAA 1 cut(s) 387
SinI GGWCC 1 cut(s) 590
Sse9I AATT 5 cut(s) 182, 286, 328, 366, 654
SspDI GGCGCC 1 cut(s) 224
SspMI CTAG 2 cut(s) 77, 531
StyD4I CCNGG 2 cut(s) 466, 592
StyI CCWWGG 1 cut(s) 46
TaiI ACGT 3 cut(s) 150, 211, 407
TaqI TCGA 4 cut(s) 374, 387, 475, 541
TasI AATT 5 cut(s) 182, 286, 328, 366, 654
TfiI GAWTC 3 cut(s) 101, 265, 320
Tru1I TTAA 2 cut(s) 504, 518
Tru9I TTAA 2 cut(s) 504, 518
TscAI CASTG 1 cut(s) 193
TspDTI ATGAA 1 cut(s) 114
TspGWI ACGGA 2 cut(s) 217, 561
TspRI CASTG 1 cut(s) 193
Tth111I GACNNNGTC 1 cut(s) 594
VpaK11BI GGWCC 1 cut(s) 590
VspI ATTAAT 1 cut(s) 504
XapI RAATTY 2 cut(s) 182, 328
XbaI TCTAGA 1 cut(s) 76
XceI RCATGY 1 cut(s) 567
XmnI GAANNNNTTC 1 cut(s) 116
XspI CTAG 2 cut(s) 77, 531
ZraI GACGTC 1 cut(s) 209
Zsp2I ATGCAT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.