pycom16g01090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0009989
Physical Location & Seq
Forward (+)
651232 .. 652716
1485 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g01090.3

Sequence Viewer

Length: 924 bp
ATGGGCGAGCTTCATGACTCCATGTCCATGGCTTACACAAACAGTAGCCTTCACAGCTCTTCCCTAGGTTGGGATTGTCACAGCCACCTTGGAGTCCTCAACACAGACAGAATGTCTTTAGCTATGGAAGAGTACATGATGATGAATGCACCATTTTACTCATCGCCTCATGTAGATCAGTCGGATTTCTCGACGGGGTACTTAGAAGACGCTTTGGTTGAATTTAGCGAGCGATCCAAAAGAAGACGCTTGCTCGCGTATACCGATGGTGATAACGAGCTCAAGGACTCCTCCACTTCTCTTCTTGCGAAGAGGTACTGGAATTCAGACTGGGAAGTGTCTGAGAATTTTGATTGCATGAGCCAGCTAACTACTTCCAGTTCTGGGCTATCAGTTCTTCTAGGTGATCCTGCAAGTATAACCACACCAATGAGCAGACTCGAGTCCGAAGAGATCACAAACGACATAGTCGGCACAAAGATAAACACACCAGAAGAGCCAACAATGTCAGCTCCCGAAGCTTTTGATTCCTTCTCTTCTTCTTCTAGCAAAGACTCGGCAAACACCAACTCTGATTATTTACCTGCTCCCAAAGAAACTTTTTTAACCAATATTGCTGCTCCAGCTGTAGGTGGTGGTGATGATGAAAAGAGAAAAAAGAAGAAGAGGGTGATAACAAAGGTGGTCTATCCATTTGCGTTGGTGAAGCCGGGCGGAGTAGAAGGCGACGTGACCTTGAACGACATCAACGAGAGAATCCTAATGCCACCAACACGGCCAGTACGACACCCAGTTGGGGACTTTGCGTGTCGACCATGCGTGTCTGCCGATGGCCCTGGCCTTTCTGGCAAAGCTGTGGTGGCCCTTACCAGGATTCAAACCCAGGGCAGAGGCACAATCACTATTATCAGAACCAAAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

308

Amino Acids

33.51

Weight (kDa)

5.15

Isoelectric Point (pI)

60.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009989)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14630 AT1G14630 AT2G01990 AT2G01990
fragaria_vesca FvH4_4g35920
malus_domestica MD13G1013900.v1.1 MD16G1011100.v1.1
prunus_persica Prupe.1G339600_v2.0.a1 Prupe.1G339600_v2.0.a1
pyrus_communis pycom13g01180 pycom16g01090
rosa_chinensis RchiOBHm_Chr4g0445521
rosa_laevigata RLG00000005733
rosa_multiflora Rmu_ssc0000253.1_g000002
rosa_roxburghii Rroxscaffold_5G00386000
rosa_rugosa Rorug04G0362100
rosa_samantha Rh4AG423600 Rh4BG435600 Rh4CG450300 Rh4DG431900
rosa_wichuraiana Rw4G036310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 592
AccI GTMKAC 2 cut(s) 260, 811
AccII CGCG 1 cut(s) 257
AciI CCGC 1 cut(s) 714
AclWI GGATC 2 cut(s) 228, 401
AcoI YGGCCR 1 cut(s) 776
AcsI RAATTY 3 cut(s) 221, 322, 346
AfaI GTAC 4 cut(s) 134, 200, 317, 783
AfiI CCNNNNNNNGG 6 cut(s) 69, 70, 384, 629, 796, 870
AgsI TTSAA 3 cut(s) 221, 739, 878
AhdI GACNNNNNGTC 2 cut(s) 22, 112
AjiI CACGTC 1 cut(s) 730
AjnI CCWGG 3 cut(s) 835, 869, 882
AluBI AGCT 9 cut(s) 10, 57, 122, 280, 367, 512, 521, 626, 854
AluI AGCT 9 cut(s) 10, 57, 122, 280, 367, 512, 521, 626, 854
Alw21I GWGCWC 1 cut(s) 282
AlwI GGATC 2 cut(s) 228, 401
Ama87I CYCGRG 1 cut(s) 440
AoxI GGCC 4 cut(s) 776, 832, 838, 861
ApeKI GCWGC 1 cut(s) 617
ApoI RAATTY 3 cut(s) 221, 322, 346
AspA2I CCTAGG 1 cut(s) 64
AspS9I GGNCC 2 cut(s) 833, 862
AsuC2I CCSGG 1 cut(s) 711
AsuHPI GGTGA 5 cut(s) 281, 416, 650, 682, 715
AvaI CYCGRG 1 cut(s) 440
AvrII CCTAGG 1 cut(s) 64
BanII GRGCYC 1 cut(s) 282
BbsI GAAGAC 2 cut(s) 213, 250
Bbv12I GWGCWC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 604
BccI CCATC 2 cut(s) 260, 824
BceAI ACGGC 1 cut(s) 791
BciT130I CCWGG 3 cut(s) 837, 871, 884
BcnI CCSGG 1 cut(s) 711
BfaI CTAG 3 cut(s) 65, 401, 546
BfmI CTRYAG 1 cut(s) 627
BfuAI ACCTGC 1 cut(s) 592
BglI GCCNNNNNGGC 1 cut(s) 846
BisI GCNGC 1 cut(s) 618
BlnI CCTAGG 1 cut(s) 64
BlsI GCNGC 1 cut(s) 619
Bme1390I CCNGG 4 cut(s) 711, 837, 871, 884
BmeRI GACNNNNNGTC 2 cut(s) 22, 112
BmeT110I CYCGRG 1 cut(s) 440
BmgBI CACGTC 1 cut(s) 730
BmgT120I GGNCC 2 cut(s) 833, 862
BmrFI CCNGG 4 cut(s) 711, 837, 871, 884
BmrI ACTGGG 2 cut(s) 340, 785
BmuI ACTGGG 2 cut(s) 340, 785
BoxI GACNNNNGTC 1 cut(s) 442
BpiI GAAGAC 2 cut(s) 213, 250
BpmI CTGGAG 1 cut(s) 606
BpuEI CTTGAG 1 cut(s) 266
BpuMI CCSGG 1 cut(s) 711
BsaJI CCNNGG 6 cut(s) 27, 64, 88, 835, 882, 883
Bsc4I CCNNNNNNNGG 6 cut(s) 69, 70, 384, 629, 796, 870
Bse1I ACTGG 5 cut(s) 323, 335, 378, 779, 791
BseBI CCWGG 3 cut(s) 837, 871, 884
BseDI CCNNGG 6 cut(s) 27, 64, 88, 835, 882, 883
BseLI CCNNNNNNNGG 6 cut(s) 69, 70, 384, 629, 796, 870
BseMII CTCAG 1 cut(s) 333
BseNI ACTGG 5 cut(s) 323, 335, 378, 779, 791
BseRI GAGGAG 1 cut(s) 280
BseXI GCAGC 1 cut(s) 604
Bsh1236I CGCG 1 cut(s) 257
BshFI GGCC 4 cut(s) 778, 834, 840, 863
BsiHKAI GWGCWC 1 cut(s) 282
BsiHKCI CYCGRG 1 cut(s) 440
BsiSI CCGG 1 cut(s) 710
BslFI GGGAC 1 cut(s) 812
BslI CCNNNNNNNGG 6 cut(s) 69, 70, 384, 629, 796, 870
BsmFI GGGAC 1 cut(s) 812
BsmI GAATGC 1 cut(s) 151
BsnI GGCC 4 cut(s) 778, 834, 840, 863
BsoBI CYCGRG 1 cut(s) 440
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 4 cut(s) 175, 233, 406, 453
Bsp19I CCATGG 1 cut(s) 27
BspACI CCGC 1 cut(s) 714
BspANI GGCC 4 cut(s) 778, 834, 840, 863
BspCNI CTCAG 1 cut(s) 334
BspFNI CGCG 1 cut(s) 257
BspHI TCATGA 1 cut(s) 13
BspMI ACCTGC 1 cut(s) 592
BspPI GGATC 2 cut(s) 228, 401
BspQI GCTCTTC 2 cut(s) 64, 489
BsrI ACTGG 5 cut(s) 323, 335, 378, 779, 791
BssECI CCNNGG 6 cut(s) 27, 64, 88, 835, 882, 883
BssMI GATC 4 cut(s) 175, 233, 406, 453
BssNAI GTATAC 1 cut(s) 261
BssT1I CCWWGG 3 cut(s) 27, 64, 88
Bst1107I GTATAC 1 cut(s) 261
Bst2UI CCWGG 3 cut(s) 837, 871, 884
Bst4CI ACNGT 1 cut(s) 44
Bst6I CTCTTC 8 cut(s) 64, 123, 305, 306, 444, 489, 541, 659
BstC8I GCNNGC 5 cut(s) 8, 230, 251, 255, 365
BstDEI CTNAG 2 cut(s) 202, 342
BstDSI CCRYGG 1 cut(s) 27
BstFNI CGCG 1 cut(s) 257
BstKTI GATC 4 cut(s) 178, 236, 409, 456
BstMBI GATC 4 cut(s) 175, 233, 406, 453
BstMWI GCNNNNNNNGC 5 cut(s) 54, 518, 623, 846, 860
BstNI CCWGG 3 cut(s) 837, 871, 884
BstPAI GACNNNNGTC 1 cut(s) 442
BstSCI CCNGG 4 cut(s) 709, 835, 869, 882
BstSFI CTRYAG 1 cut(s) 627
BstUI CGCG 1 cut(s) 257
BstV1I GCAGC 1 cut(s) 604
BstV2I GAAGAC 2 cut(s) 213, 250
BstXI CCANNNNNNTGG 1 cut(s) 28
BstZ17I GTATAC 1 cut(s) 261
BsuRI GGCC 4 cut(s) 778, 834, 840, 863
BtgI CCRYGG 1 cut(s) 27
BtgZI GCGATG 1 cut(s) 147
BtrI CACGTC 1 cut(s) 730
BveI ACCTGC 1 cut(s) 592
Cac8I GCNNGC 5 cut(s) 8, 230, 251, 255, 365
CciI TCATGA 1 cut(s) 13
Cfr13I GGNCC 2 cut(s) 833, 862
CseI GACGC 2 cut(s) 218, 255
Csp6I GTAC 4 cut(s) 133, 199, 316, 782
CviAII CATG 7 cut(s) 14, 22, 28, 136, 170, 358, 816
CviQI GTAC 4 cut(s) 133, 199, 316, 782
DdeI CTNAG 2 cut(s) 202, 342
DpnI GATC 4 cut(s) 177, 235, 408, 455
DpnII GATC 4 cut(s) 175, 233, 406, 453
DriI GACNNNNNGTC 2 cut(s) 22, 112
EaeI YGGCCR 1 cut(s) 776
Eam1104I CTCTTC 8 cut(s) 64, 123, 305, 306, 444, 489, 541, 659
Eam1105I GACNNNNNGTC 2 cut(s) 22, 112
EarI CTCTTC 8 cut(s) 64, 123, 305, 306, 444, 489, 541, 659
EciI GGCGGA 1 cut(s) 729
Ecl136II GAGCTC 1 cut(s) 280
Eco130I CCWWGG 3 cut(s) 27, 64, 88
Eco24I GRGCYC 1 cut(s) 282
Eco53kI GAGCTC 1 cut(s) 280
Eco88I CYCGRG 1 cut(s) 440
EcoICRI GAGCTC 1 cut(s) 280
EcoRI GAATTC 1 cut(s) 322
EcoRII CCWGG 3 cut(s) 835, 869, 882
EcoT14I CCWWGG 3 cut(s) 27, 64, 88
EcoT38I GRGCYC 1 cut(s) 282
ErhI CCWWGG 3 cut(s) 27, 64, 88
FaeI CATG 7 cut(s) 17, 25, 31, 139, 173, 361, 819
FaqI GGGAC 1 cut(s) 812
FatI CATG 7 cut(s) 13, 21, 27, 135, 169, 357, 815
FblI GTMKAC 2 cut(s) 260, 811
Fnu4HI GCNGC 1 cut(s) 618
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 1 cut(s) 618
FspBI CTAG 3 cut(s) 65, 401, 546
GluI GCNGC 1 cut(s) 618
GsuI CTGGAG 1 cut(s) 606
HaeIII GGCC 4 cut(s) 778, 834, 840, 863
HapII CCGG 1 cut(s) 710
HgaI GACGC 2 cut(s) 218, 255
Hin1II CATG 7 cut(s) 17, 25, 31, 139, 173, 361, 819
HincII GTYRAC 1 cut(s) 812
HindII GTYRAC 1 cut(s) 812
HindIII AAGCTT 1 cut(s) 519
HinfI GANTC 9 cut(s) 17, 93, 287, 438, 443, 527, 554, 756, 874
HpaII CCGG 1 cut(s) 710
HphI GGTGA 5 cut(s) 281, 416, 650, 682, 715
Hpy166II GTNNAC 2 cut(s) 261, 812
Hpy188I TCNGA 6 cut(s) 184, 328, 343, 448, 574, 911
Hpy188III TCNNGA 3 cut(s) 14, 190, 515
Hpy8I GTNNAC 2 cut(s) 261, 812
Hpy99I CGWCG 2 cut(s) 196, 731
HpyAV CCTTC 3 cut(s) 59, 541, 716
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4IV ACGT 1 cut(s) 729
HpyCH4V TGCA 3 cut(s) 149, 357, 413
HpyF10VI GCNNNNNNNGC 5 cut(s) 54, 518, 623, 846, 860
HpyF3I CTNAG 2 cut(s) 202, 342
HpySE526I ACGT 1 cut(s) 729
Hsp92II CATG 7 cut(s) 17, 25, 31, 139, 173, 361, 819
Kzo9I GATC 4 cut(s) 175, 233, 406, 453
LguI GCTCTTC 2 cut(s) 64, 489
LmnI GCTCC 3 cut(s) 517, 592, 625
Lsp1109I GCAGC 1 cut(s) 604
MaeI CTAG 3 cut(s) 65, 401, 546
MaeII ACGT 1 cut(s) 729
MaeIII GTNAC 2 cut(s) 77, 730
MalI GATC 4 cut(s) 177, 235, 408, 455
MboI GATC 4 cut(s) 175, 233, 406, 453
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 3 cut(s) 221, 322, 346
MlyI GAGTC 6 cut(s) 11, 102, 281, 432, 452, 548
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 6 cut(s) 107, 177, 301, 306, 660, 884
MseI TTAA 2 cut(s) 605, 922
MslI CAYNNNNRTG 3 cut(s) 26, 140, 428
MspA1I CMGCKG 1 cut(s) 626
MspI CCGG 1 cut(s) 710
MspR9I CCNGG 4 cut(s) 711, 837, 871, 884
Mva1269I GAATGC 1 cut(s) 151
MvaI CCWGG 3 cut(s) 837, 871, 884
MvnI CGCG 1 cut(s) 257
MwoI GCNNNNNNNGC 5 cut(s) 54, 518, 623, 846, 860
NciI CCSGG 1 cut(s) 711
NcoI CCATGG 1 cut(s) 27
NdeII GATC 4 cut(s) 175, 233, 406, 453
NlaIII CATG 7 cut(s) 17, 25, 31, 139, 173, 361, 819
NmeAIII GCCGAG 1 cut(s) 536
NmuCI GTSAC 2 cut(s) 77, 730
PaeR7I CTCGAG 1 cut(s) 440
PagI TCATGA 1 cut(s) 13
PasI CCCWGGG 1 cut(s) 883
PciSI GCTCTTC 2 cut(s) 64, 489
PcsI WCGNNNNNNNCGW 4 cut(s) 188, 261, 747, 781
PctI GAATGC 1 cut(s) 151
PfeI GAWTC 3 cut(s) 527, 756, 874
PflFI GACNNNGTC 1 cut(s) 467
PkrI GCNGC 1 cut(s) 619
PleI GAGTC 6 cut(s) 11, 101, 281, 432, 451, 548
PpsI GAGTC 6 cut(s) 11, 101, 281, 432, 451, 548
PshAI GACNNNNGTC 1 cut(s) 442
Psp124BI GAGCTC 1 cut(s) 282
Psp6I CCWGG 3 cut(s) 835, 869, 882
PspGI CCWGG 3 cut(s) 835, 869, 882
PspPI GGNCC 2 cut(s) 833, 862
PspXI VCTCGAGB 1 cut(s) 440
PsyI GACNNNGTC 1 cut(s) 467
PvuII CAGCTG 1 cut(s) 626
RsaI GTAC 4 cut(s) 134, 200, 317, 783
RsaNI GTAC 4 cut(s) 133, 199, 316, 782
RseI CAYNNNNRTG 3 cut(s) 26, 140, 428
SacI GAGCTC 1 cut(s) 282
SalI GTCGAC 1 cut(s) 810
SapI GCTCTTC 2 cut(s) 64, 489
SaqAI TTAA 2 cut(s) 605, 922
SatI GCNGC 1 cut(s) 618
Sau3AI GATC 4 cut(s) 175, 233, 406, 453
Sau96I GGNCC 2 cut(s) 833, 862
SchI GAGTC 6 cut(s) 11, 102, 281, 432, 452, 548
ScrFI CCNGG 4 cut(s) 711, 837, 871, 884
SduI GDGCHC 1 cut(s) 282
SfcI CTRYAG 1 cut(s) 627
Sfr274I CTCGAG 1 cut(s) 440
SlaI CTCGAG 1 cut(s) 440
SmiMI CAYNNNNRTG 3 cut(s) 26, 140, 428
SmlI CTYRAG 2 cut(s) 281, 440
SmoI CTYRAG 2 cut(s) 281, 440
Sse9I AATT 3 cut(s) 221, 322, 346
SsiI CCGC 1 cut(s) 714
SspI AATATT 1 cut(s) 613
SspMI CTAG 3 cut(s) 65, 401, 546
SstI GAGCTC 1 cut(s) 282
StyD4I CCNGG 4 cut(s) 709, 835, 869, 882
StyI CCWWGG 3 cut(s) 27, 64, 88
TaaI ACNGT 1 cut(s) 44
TaiI ACGT 1 cut(s) 732
TaqI TCGA 3 cut(s) 191, 441, 811
TasI AATT 3 cut(s) 221, 322, 346
TatI WGTACW 1 cut(s) 132
TfiI GAWTC 3 cut(s) 527, 756, 874
Tru1I TTAA 2 cut(s) 605, 922
Tru9I TTAA 2 cut(s) 605, 922
TseFI GTSAC 2 cut(s) 77, 730
TseI GCWGC 1 cut(s) 617
Tsp45I GTSAC 2 cut(s) 77, 730
TspDTI ATGAA 2 cut(s) 158, 660
Tth111I GACNNNGTC 1 cut(s) 467
XapI RAATTY 3 cut(s) 221, 322, 346
XhoI CTCGAG 1 cut(s) 440
XmaJI CCTAGG 1 cut(s) 64
XmiI GTMKAC 2 cut(s) 260, 811
XspI CTAG 3 cut(s) 65, 401, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.