pycom13g01180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0009989
Physical Location & Seq
Forward (+)
760404 .. 761991
1588 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g01180.4

Sequence Viewer

Length: 900 bp
ATGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGGTGAGCTTCATCACTCCATGTCCATGGCTTACACGAACAGTAGCCTCCACAACTCTTCCCAACGTTGGGATTGTCACGGCCACCTTGGAGTTCTCAACACAGACAGAATGTCTTTAGCTATGGATGAGTACATGATGATGAACGCAGCATTTTGCTCATCACCTCATGTAGATCAGTCAGATTTCTCGACGGGGTACTTAGAAGACGCTTTGGTTGAATTTGGTGAGCGATCCAAAAGGAGACGCTTGCTCGTGTATACCAATGATGATAACGAGCTCAAAGACTCCACTACTATTCTTGCGAAGCTAACTACTTCCAGTACTGGGCTATCAGTTCTACTTGGTGATCCTTTATGTATAACCAGACCAATGAACAGACTCGTTTCCGAGGAGATCACAAATGACATCGTCAACGCAAAGATAAACACACCAGAAGAGCCAACAATTTCAGCTCCTGAAGCTTTTGATTCCTCCTCTTCTTCTTGCAAAGACTCGGCCAACACCAACTCTGATTATTTACCTACTCCCAAAGATACCCTTTTTTCAAATATTGCTGCTCCAGCTGCCGGTGGTGGTGGTGATGAAAAGAGAAAAAAGAAGAAGAGGGTGATAACAAGGGTAGTTTATCCATTTGCGTTGGTGAAGCCGGGCGGAGTAGAAGGCGACGTCACCTTAAGCGACATCAACGAGAGGATCCTGATGCCACCAACACGGCCAGTACGACACCCAGTTGGGGACTTTGCATGTCGGCCATGCGTGTCTGCGGATGGCCCTGGCCTTTCTGGCAAAGCTGTGGTGGCCCTTACCAGAATTCAAACCCAGGGCAGAGGCACAATCACTATTATCAGAACCAAAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

300

Amino Acids

32.85

Weight (kDa)

6.2

Isoelectric Point (pI)

48.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009989)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14630 AT1G14630 AT2G01990 AT2G01990
fragaria_vesca FvH4_4g35920
malus_domestica MD13G1013900.v1.1 MD16G1011100.v1.1
prunus_persica Prupe.1G339600_v2.0.a1 Prupe.1G339600_v2.0.a1
pyrus_communis pycom13g01180 pycom16g01090
rosa_chinensis RchiOBHm_Chr4g0445521
rosa_laevigata RLG00000005733
rosa_multiflora Rmu_ssc0000253.1_g000002
rosa_roxburghii Rroxscaffold_5G00386000
rosa_rugosa Rorug04G0362100
rosa_samantha Rh4AG423600 Rh4BG435600 Rh4CG450300 Rh4DG431900
rosa_wichuraiana Rw4G036310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 708
AccI GTMKAC 1 cut(s) 296
AciI CCGC 2 cut(s) 690, 803
AclI AACGTT 1 cut(s) 103
AclWI GGATC 4 cut(s) 264, 380, 727, 740
AcoI YGGCCR 4 cut(s) 118, 534, 752, 788
AcsI RAATTY 2 cut(s) 257, 849
AcuI CTGAAG 1 cut(s) 516
AcyI GRCGYC 1 cut(s) 705
AfaI GTAC 4 cut(s) 170, 236, 361, 759
AfiI CCNNNNNNNGG 5 cut(s) 105, 106, 363, 605, 772
AflII CTTAAG 1 cut(s) 712
AgsI TTSAA 3 cut(s) 257, 585, 854
AhdI GACNNNNNGTC 1 cut(s) 148
AjnI CCWGG 2 cut(s) 811, 858
AluBI AGCT 8 cut(s) 46, 158, 316, 346, 491, 500, 602, 830
AluI AGCT 8 cut(s) 46, 158, 316, 346, 491, 500, 602, 830
Alw21I GWGCWC 1 cut(s) 318
Alw26I GTCTC 1 cut(s) 274
AlwI GGATC 4 cut(s) 264, 380, 727, 740
AlwNI CAGNNNCTG 1 cut(s) 494
AoxI GGCC 7 cut(s) 118, 534, 752, 788, 808, 814, 837
ApeKI GCWGC 3 cut(s) 185, 593, 602
ApoI RAATTY 2 cut(s) 257, 849
AspS9I GGNCC 2 cut(s) 809, 838
AsuC2I CCSGG 1 cut(s) 687
AsuHPI GGTGA 8 cut(s) 53, 192, 275, 395, 629, 658, 691, 700
BamHI GGATCC 1 cut(s) 732
BanII GRGCYC 1 cut(s) 318
BauI CACGAG 1 cut(s) 290
BbsI GAAGAC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 318
BbvI GCAGC 3 cut(s) 197, 580, 589
BccI CCATC 2 cut(s) 31, 800
BceAI ACGGC 2 cut(s) 133, 767
BciT130I CCWGG 2 cut(s) 813, 860
BcnI CCSGG 1 cut(s) 687
BcoDI GTCTC 1 cut(s) 274
BfrI CTTAAG 1 cut(s) 712
BglI GCCNNNNNGGC 1 cut(s) 822
BisI GCNGC 3 cut(s) 186, 594, 603
BlsI GCNGC 3 cut(s) 187, 595, 604
BmcAI AGTACT 1 cut(s) 361
Bme1390I CCNGG 3 cut(s) 687, 813, 860
BmeRI GACNNNNNGTC 1 cut(s) 148
BmgT120I GGNCC 2 cut(s) 809, 838
BmiI GGNNCC 1 cut(s) 734
BmrFI CCNGG 3 cut(s) 687, 813, 860
BmrI ACTGGG 2 cut(s) 372, 761
BmsI GCATC 1 cut(s) 729
BmuI ACTGGG 2 cut(s) 372, 761
BpiI GAAGAC 1 cut(s) 249
BpmI CTGGAG 1 cut(s) 582
BpuMI CCSGG 1 cut(s) 687
BsaHI GRCGYC 1 cut(s) 705
BsaJI CCNNGG 6 cut(s) 63, 124, 426, 811, 858, 859
Bsc4I CCNNNNNNNGG 5 cut(s) 105, 106, 363, 605, 772
Bse118I RCCGGY 1 cut(s) 605
Bse1I ACTGG 4 cut(s) 357, 367, 755, 767
BseBI CCWGG 2 cut(s) 813, 860
BseDI CCNNGG 6 cut(s) 63, 124, 426, 811, 858, 859
BseGI GGATG 2 cut(s) 169, 811
BseLI CCNNNNNNNGG 5 cut(s) 105, 106, 363, 605, 772
BseNI ACTGG 4 cut(s) 357, 367, 755, 767
BseRI GAGGAG 2 cut(s) 443, 502
BseXI GCAGC 3 cut(s) 197, 580, 589
BshFI GGCC 7 cut(s) 120, 536, 754, 790, 810, 816, 839
BsiHKAI GWGCWC 1 cut(s) 318
BsiSI CCGG 2 cut(s) 606, 686
BslFI GGGAC 1 cut(s) 788
BslI CCNNNNNNNGG 5 cut(s) 105, 106, 363, 605, 772
BsmAI GTCTC 1 cut(s) 274
BsmBI CGTCTC 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 788
BsnI GGCC 7 cut(s) 120, 536, 754, 790, 810, 816, 839
Bsp1286I GDGCHC 1 cut(s) 318
Bsp143I GATC 5 cut(s) 211, 269, 385, 432, 732
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 2 cut(s) 690, 803
BspANI GGCC 7 cut(s) 120, 536, 754, 790, 810, 816, 839
BspLI GGNNCC 1 cut(s) 734
BspPI GGATC 4 cut(s) 264, 380, 727, 740
BspQI GCTCTTC 1 cut(s) 468
BspTI CTTAAG 1 cut(s) 712
BsrFI RCCGGY 1 cut(s) 605
BsrI ACTGG 4 cut(s) 357, 367, 755, 767
BssAI RCCGGY 1 cut(s) 605
BssECI CCNNGG 6 cut(s) 63, 124, 426, 811, 858, 859
BssMI GATC 5 cut(s) 211, 269, 385, 432, 732
BssNAI GTATAC 1 cut(s) 297
BssNI GRCGYC 1 cut(s) 705
BssSI CACGAG 1 cut(s) 290
BssT1I CCWWGG 2 cut(s) 63, 124
Bst1107I GTATAC 1 cut(s) 297
Bst2BI CACGAG 1 cut(s) 290
Bst2UI CCWGG 2 cut(s) 813, 860
Bst4CI ACNGT 1 cut(s) 80
Bst6I CTCTTC 4 cut(s) 100, 468, 520, 635
BstACI GRCGYC 1 cut(s) 705
BstAFI CTTAAG 1 cut(s) 712
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 1 cut(s) 238
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 2 cut(s) 169, 811
BstKTI GATC 5 cut(s) 214, 272, 388, 435, 735
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 5 cut(s) 211, 269, 385, 432, 732
BstMWI GCNNNNNNNGC 5 cut(s) 497, 599, 602, 822, 836
BstNI CCWGG 2 cut(s) 813, 860
BstNSI RCATGY 1 cut(s) 786
BstSCI CCNGG 3 cut(s) 685, 811, 858
BstV1I GCAGC 3 cut(s) 197, 580, 589
BstV2I GAAGAC 1 cut(s) 249
BstX2I RGATCY 1 cut(s) 732
BstXI CCANNNNNNTGG 1 cut(s) 64
BstYI RGATCY 1 cut(s) 732
BstZ17I GTATAC 1 cut(s) 297
BsuRI GGCC 7 cut(s) 120, 536, 754, 790, 810, 816, 839
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 2 cut(s) 169, 811
Cac8I GCNNGC 1 cut(s) 287
CaiI CAGNNNCTG 1 cut(s) 494
Cfr10I RCCGGY 1 cut(s) 605
Cfr13I GGNCC 2 cut(s) 809, 838
CseI GACGC 2 cut(s) 254, 291
Csp6I GTAC 4 cut(s) 169, 235, 360, 758
CviAII CATG 6 cut(s) 58, 64, 172, 206, 783, 792
CviQI GTAC 4 cut(s) 169, 235, 360, 758
DdeI CTNAG 1 cut(s) 238
DpnI GATC 5 cut(s) 213, 271, 387, 434, 734
DpnII GATC 5 cut(s) 211, 269, 385, 432, 732
DriI GACNNNNNGTC 1 cut(s) 148
EaeI YGGCCR 4 cut(s) 118, 534, 752, 788
Eam1104I CTCTTC 4 cut(s) 100, 468, 520, 635
Eam1105I GACNNNNNGTC 1 cut(s) 148
EarI CTCTTC 4 cut(s) 100, 468, 520, 635
EciI GGCGGA 1 cut(s) 705
Ecl136II GAGCTC 1 cut(s) 316
Eco130I CCWWGG 2 cut(s) 63, 124
Eco24I GRGCYC 1 cut(s) 318
Eco53kI GAGCTC 1 cut(s) 316
Eco57I CTGAAG 1 cut(s) 516
EcoICRI GAGCTC 1 cut(s) 316
EcoRI GAATTC 1 cut(s) 849
EcoRII CCWGG 2 cut(s) 811, 858
EcoT14I CCWWGG 2 cut(s) 63, 124
EcoT38I GRGCYC 1 cut(s) 318
ErhI CCWWGG 2 cut(s) 63, 124
Esp3I CGTCTC 1 cut(s) 274
FaeI CATG 6 cut(s) 61, 67, 175, 209, 786, 795
FalI AAGNNNNNCTT 2 cut(s) 561, 593
FaqI GGGAC 1 cut(s) 788
FatI CATG 6 cut(s) 57, 63, 171, 205, 782, 791
FblI GTMKAC 1 cut(s) 296
Fnu4HI GCNGC 3 cut(s) 186, 594, 603
FokI GGATG 2 cut(s) 176, 818
FriOI GRGCYC 1 cut(s) 318
Fsp4HI GCNGC 3 cut(s) 186, 594, 603
GluI GCNGC 3 cut(s) 186, 594, 603
GsuI CTGGAG 1 cut(s) 582
HaeIII GGCC 7 cut(s) 120, 536, 754, 790, 810, 816, 839
HapII CCGG 2 cut(s) 606, 686
HgaI GACGC 2 cut(s) 254, 291
Hin1I GRCGYC 1 cut(s) 705
Hin1II CATG 6 cut(s) 61, 67, 175, 209, 786, 795
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HindIII AAGCTT 1 cut(s) 498
HinfI GANTC 4 cut(s) 323, 417, 506, 530
HpaII CCGG 2 cut(s) 606, 686
HphI GGTGA 8 cut(s) 53, 192, 275, 395, 629, 658, 691, 700
Hpy166II GTNNAC 2 cut(s) 297, 451
Hpy188I TCNGA 4 cut(s) 220, 427, 550, 887
Hpy188III TCNNGA 3 cut(s) 226, 494, 736
Hpy8I GTNNAC 2 cut(s) 297, 451
Hpy99I CGWCG 2 cut(s) 232, 707
HpyAV CCTTC 1 cut(s) 692
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4IV ACGT 2 cut(s) 103, 705
HpyCH4V TGCA 2 cut(s) 525, 782
HpyF10VI GCNNNNNNNGC 5 cut(s) 497, 599, 602, 822, 836
HpyF3I CTNAG 1 cut(s) 238
HpySE526I ACGT 2 cut(s) 103, 705
Hsp92I GRCGYC 1 cut(s) 705
Hsp92II CATG 6 cut(s) 61, 67, 175, 209, 786, 795
Kzo9I GATC 5 cut(s) 211, 269, 385, 432, 732
LguI GCTCTTC 1 cut(s) 468
LmnI GCTCC 2 cut(s) 496, 601
Lsp1109I GCAGC 3 cut(s) 197, 580, 589
LweI GCATC 1 cut(s) 729
MaeII ACGT 2 cut(s) 103, 705
MaeIII GTNAC 2 cut(s) 113, 706
MalI GATC 5 cut(s) 213, 271, 387, 434, 734
MboI GATC 5 cut(s) 211, 269, 385, 432, 732
MboII GAAGA 7 cut(s) 87, 254, 485, 507, 510, 649, 652
MflI RGATCY 1 cut(s) 732
MhlI GDGCHC 1 cut(s) 318
MluCI AATT 3 cut(s) 257, 483, 849
MlyI GAGTC 3 cut(s) 317, 411, 524
MnlI CCTC 8 cut(s) 95, 213, 421, 520, 523, 636, 723, 860
MseI TTAA 1 cut(s) 713
MslI CAYNNNNRTG 2 cut(s) 62, 176
MspA1I CMGCKG 1 cut(s) 602
MspCI CTTAAG 1 cut(s) 712
MspI CCGG 2 cut(s) 606, 686
MspR9I CCNGG 3 cut(s) 687, 813, 860
MvaI CCWGG 2 cut(s) 813, 860
MwoI GCNNNNNNNGC 5 cut(s) 497, 599, 602, 822, 836
NciI CCSGG 1 cut(s) 687
NcoI CCATGG 1 cut(s) 63
NdeII GATC 5 cut(s) 211, 269, 385, 432, 732
NlaIII CATG 6 cut(s) 61, 67, 175, 209, 786, 795
NlaIV GGNNCC 1 cut(s) 734
NmeAIII GCCGAG 1 cut(s) 512
NmuCI GTSAC 2 cut(s) 113, 706
NspI RCATGY 1 cut(s) 786
PasI CCCWGGG 1 cut(s) 859
PciSI GCTCTTC 1 cut(s) 468
PcsI WCGNNNNNNNCGW 1 cut(s) 757
PfeI GAWTC 1 cut(s) 506
PflFI GACNNNGTC 1 cut(s) 446
PkrI GCNGC 3 cut(s) 187, 595, 604
PleI GAGTC 3 cut(s) 317, 411, 524
PpsI GAGTC 3 cut(s) 317, 411, 524
Psp124BI GAGCTC 1 cut(s) 318
Psp1406I AACGTT 1 cut(s) 103
Psp6I CCWGG 2 cut(s) 811, 858
PspGI CCWGG 2 cut(s) 811, 858
PspN4I GGNNCC 1 cut(s) 734
PspPI GGNCC 2 cut(s) 809, 838
PstNI CAGNNNCTG 1 cut(s) 494
PsuI RGATCY 1 cut(s) 732
PsyI GACNNNGTC 1 cut(s) 446
PvuII CAGCTG 1 cut(s) 602
RsaI GTAC 4 cut(s) 170, 236, 361, 759
RsaNI GTAC 4 cut(s) 169, 235, 360, 758
RseI CAYNNNNRTG 2 cut(s) 62, 176
SacI GAGCTC 1 cut(s) 318
SapI GCTCTTC 1 cut(s) 468
SaqAI TTAA 1 cut(s) 713
SatI GCNGC 3 cut(s) 186, 594, 603
Sau3AI GATC 5 cut(s) 211, 269, 385, 432, 732
Sau96I GGNCC 2 cut(s) 809, 838
ScaI AGTACT 1 cut(s) 361
SchI GAGTC 3 cut(s) 317, 411, 524
ScrFI CCNGG 3 cut(s) 687, 813, 860
SduI GDGCHC 1 cut(s) 318
SfaNI GCATC 1 cut(s) 729
SmiMI CAYNNNNRTG 2 cut(s) 62, 176
SmlI CTYRAG 1 cut(s) 712
SmoI CTYRAG 1 cut(s) 712
Sse9I AATT 3 cut(s) 257, 483, 849
SsiI CCGC 2 cut(s) 690, 803
SspI AATATT 1 cut(s) 589
SstI GAGCTC 1 cut(s) 318
StyD4I CCNGG 3 cut(s) 685, 811, 858
StyI CCWWGG 2 cut(s) 63, 124
TaaI ACNGT 1 cut(s) 80
TaiI ACGT 2 cut(s) 106, 708
TaqI TCGA 1 cut(s) 227
TasI AATT 3 cut(s) 257, 483, 849
TatI WGTACW 2 cut(s) 168, 359
TfiI GAWTC 1 cut(s) 506
Tru1I TTAA 1 cut(s) 713
Tru9I TTAA 1 cut(s) 713
TseFI GTSAC 2 cut(s) 113, 706
TseI GCWGC 3 cut(s) 185, 593, 602
Tsp45I GTSAC 2 cut(s) 113, 706
TspDTI ATGAA 4 cut(s) 38, 194, 425, 636
Tth111I GACNNNGTC 1 cut(s) 446
Vha464I CTTAAG 1 cut(s) 712
XapI RAATTY 2 cut(s) 257, 849
XceI RCATGY 1 cut(s) 786
XmiI GTMKAC 1 cut(s) 296
ZraI GACGTC 1 cut(s) 706
ZrmI AGTACT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.