Prupe.1G339600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0009989
Physical Location & Seq
Reverse (-)
31976697 .. 31978571
1875 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G339600.1

Sequence Viewer

Length: 948 bp
ATGGGCCTGATTCCTAGTAGATCATACATTTCATTTATATCAGATCAAATCATACTAAGCTTGTCCATGGCTTACACAAGCAGTAGCCTCTACAGCTCTTCCCTAGCTTGGGATTCTCATAACAACCACCTTGGACTTGTCAACAACACAGACAGAATGTCTTTAGCTATGGATGAGTACATGATGATGACGATGATGATGAAGGCACCGTGTTGCTCACCTCCACTGGTAGATCAGTCAGATTTCTCAACGGGGTACTTGGAAGATGCTTTGCTTGAATTTAGCGAGCCTTCCAAAAGAAGACGGGTGCTCTTGTATACCGATAACGAGATCAACCATTCCGCTACTACGACTAGTGTTCTTGAAAAGAGCCACTGGAATTCACACTGGGAATTTTCTGAGAATTTTGACTGCATGACCCAGCTAACCAGTTCCAGTGCGCTTTCAGTTCTACCGGGTGATCCTGTAAGTATAACCACACCAATCAGCAGAGTCTGTGAGGAGACAAACAGAGTTACAAAGATAAACACAGCAGAAGAGGCACCAATGCCAGCTCCTGAAGCTATTGATTCCTCCTCTTCTTCTTCTTACAAAGAGGACTCAGCCAATACCAACTCTGATTATTTACCTGCTCGTCCAGCTGCAGTAGTAGGTGGTAGCAGCAGTGATGAAAAGAGGAGAAAGAAGAAGGGGGTGATAAGAAAGGTGGTTTATCCATTTGCATTGGTGAAGCCGGGCGGAGTAGAAGGGGACATTACCTTAAACGACATCAACGAGAGGATCCTAATGCCGCCAACAAGGCCAGTACGACATCCAGTCGGGGACTTTGCGTGTCGGCCATGCGTGTCTGCTGATGGCCCTGGCCTTTCTGGCAAAGCTGTGGTGGCCCTTACCAGAATTCACACTCAGGGCAGAGGCACCATCACTATTATCAGAACCAAAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

316

Amino Acids

34.45

Weight (kDa)

6.0

Isoelectric Point (pI)

53.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009989)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14630 AT1G14630 AT2G01990 AT2G01990
fragaria_vesca FvH4_4g35920
malus_domestica MD13G1013900.v1.1 MD16G1011100.v1.1
prunus_persica Prupe.1G339600_v2.0.a1 Prupe.1G339600_v2.0.a1
pyrus_communis pycom13g01180 pycom16g01090
rosa_chinensis RchiOBHm_Chr4g0445521
rosa_laevigata RLG00000005733
rosa_multiflora Rmu_ssc0000253.1_g000002
rosa_roxburghii Rroxscaffold_5G00386000
rosa_rugosa Rorug04G0362100
rosa_samantha Rh4AG423600 Rh4BG435600 Rh4CG450300 Rh4DG431900
rosa_wichuraiana Rw4G036310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 637
AccB1I GGYRCC 3 cut(s) 205, 541, 917
AccI GTMKAC 1 cut(s) 317
AciI CCGC 3 cut(s) 342, 738, 791
AclWI GGATC 3 cut(s) 455, 775, 788
AcoI YGGCCR 1 cut(s) 836
AcsI RAATTY 5 cut(s) 278, 379, 392, 403, 897
AcuI CTGAAG 1 cut(s) 579
AfaI GTAC 3 cut(s) 179, 257, 807
AfiI CCNNNNNNNGG 2 cut(s) 108, 109
AgsI TTSAA 2 cut(s) 278, 365
AhdI GACNNNNNGTC 2 cut(s) 157, 815
AhlI ACTAGT 1 cut(s) 353
AjnI CCWGG 1 cut(s) 859
AluBI AGCT 9 cut(s) 60, 96, 107, 167, 424, 554, 563, 641, 878
AluI AGCT 9 cut(s) 60, 96, 107, 167, 424, 554, 563, 641, 878
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 497
AlwI GGATC 3 cut(s) 455, 775, 788
AlwNI CAGNNNCTG 2 cut(s) 495, 557
AoxI GGCC 6 cut(s) 4, 800, 836, 856, 862, 885
ApeKI GCWGC 2 cut(s) 641, 660
ApoI RAATTY 5 cut(s) 278, 379, 392, 403, 897
AspLEI GCGC 1 cut(s) 442
AspS9I GGNCC 3 cut(s) 4, 857, 886
AsuC2I CCSGG 2 cut(s) 456, 735
AsuHPI GGTGA 4 cut(s) 210, 470, 706, 739
BamHI GGATCC 1 cut(s) 780
BanI GGYRCC 3 cut(s) 205, 541, 917
BbsI GAAGAC 1 cut(s) 307
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 2 cut(s) 628, 672
BccI CCATC 2 cut(s) 848, 929
BciT130I CCWGG 1 cut(s) 861
BcnI CCSGG 2 cut(s) 456, 735
BcoDI GTCTC 1 cut(s) 497
BcuI ACTAGT 1 cut(s) 353
BfaI CTAG 3 cut(s) 15, 104, 354
BfmI CTRYAG 2 cut(s) 91, 642
BfuAI ACCTGC 1 cut(s) 637
BglI GCCNNNNNGGC 2 cut(s) 799, 870
BisI GCNGC 3 cut(s) 642, 661, 791
BlsI GCNGC 3 cut(s) 643, 662, 792
Bme1390I CCNGG 3 cut(s) 456, 735, 861
BmeRI GACNNNNNGTC 2 cut(s) 157, 815
BmgT120I GGNCC 3 cut(s) 4, 857, 886
BmiI GGNNCC 4 cut(s) 207, 543, 782, 919
BmrFI CCNGG 3 cut(s) 456, 735, 861
BmrI ACTGGG 1 cut(s) 397
BmsI GCATC 1 cut(s) 256
BmuI ACTGGG 1 cut(s) 397
BpiI GAAGAC 1 cut(s) 307
BpuMI CCSGG 2 cut(s) 456, 735
BsaJI CCNNGG 3 cut(s) 66, 130, 859
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 109
Bse1I ACTGG 7 cut(s) 231, 380, 392, 429, 435, 803, 815
BseBI CCWGG 1 cut(s) 861
BseDI CCNNGG 3 cut(s) 66, 130, 859
BseGI GGATG 2 cut(s) 178, 811
BseLI CCNNNNNNNGG 2 cut(s) 108, 109
BseMII CTCAG 3 cut(s) 390, 615, 920
BseNI ACTGG 7 cut(s) 231, 380, 392, 429, 435, 803, 815
BseRI GAGGAG 3 cut(s) 515, 565, 691
BseXI GCAGC 2 cut(s) 628, 672
BseYI CCCAGC 1 cut(s) 420
BshFI GGCC 6 cut(s) 6, 802, 838, 858, 864, 887
BshNI GGYRCC 3 cut(s) 205, 541, 917
BsiHKAI GWGCWC 1 cut(s) 312
BsiSI CCGG 2 cut(s) 455, 734
BslFI GGGAC 2 cut(s) 764, 836
BslI CCNNNNNNNGG 2 cut(s) 108, 109
BsmAI GTCTC 1 cut(s) 497
BsmFI GGGAC 2 cut(s) 764, 836
BsnI GGCC 6 cut(s) 6, 802, 838, 858, 864, 887
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 6 cut(s) 20, 43, 232, 330, 460, 780
Bsp19I CCATGG 1 cut(s) 66
BspACI CCGC 3 cut(s) 342, 738, 791
BspANI GGCC 6 cut(s) 6, 802, 838, 858, 864, 887
BspCNI CTCAG 3 cut(s) 391, 614, 919
BspLI GGNNCC 4 cut(s) 207, 543, 782, 919
BspMAI CTGCAG 1 cut(s) 646
BspMI ACCTGC 1 cut(s) 637
BspPI GGATC 3 cut(s) 455, 775, 788
BspQI GCTCTTC 1 cut(s) 103
BspT107I GGYRCC 3 cut(s) 205, 541, 917
BsrI ACTGG 7 cut(s) 231, 380, 392, 429, 435, 803, 815
BssECI CCNNGG 3 cut(s) 66, 130, 859
BssMI GATC 6 cut(s) 20, 43, 232, 330, 460, 780
BssNAI GTATAC 1 cut(s) 318
BssT1I CCWWGG 2 cut(s) 66, 130
Bst1107I GTATAC 1 cut(s) 318
Bst2UI CCWGG 1 cut(s) 861
Bst4CI ACNGT 1 cut(s) 210
Bst6I CTCTTC 3 cut(s) 103, 531, 583
BstC8I GCNNGC 2 cut(s) 287, 552
BstDEI CTNAG 4 cut(s) 56, 399, 601, 906
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 2 cut(s) 178, 811
BstHHI GCGC 1 cut(s) 442
BstKTI GATC 6 cut(s) 23, 46, 235, 333, 463, 783
BstMAI GTCTC 1 cut(s) 497
BstMBI GATC 6 cut(s) 20, 43, 232, 330, 460, 780
BstMWI GCNNNNNNNGC 7 cut(s) 93, 539, 560, 638, 799, 870, 884
BstNI CCWGG 1 cut(s) 861
BstSCI CCNGG 3 cut(s) 454, 733, 859
BstSFI CTRYAG 2 cut(s) 91, 642
BstV1I GCAGC 2 cut(s) 628, 672
BstV2I GAAGAC 1 cut(s) 307
BstX2I RGATCY 1 cut(s) 780
BstYI RGATCY 1 cut(s) 780
BstZ17I GTATAC 1 cut(s) 318
BsuRI GGCC 6 cut(s) 6, 802, 838, 858, 864, 887
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 2 cut(s) 178, 811
BtsI GCAGTG 1 cut(s) 670
BtsIMutI CAGTG 5 cut(s) 224, 373, 385, 442, 670
BveI ACCTGC 1 cut(s) 637
Cac8I GCNNGC 2 cut(s) 287, 552
CaiI CAGNNNCTG 2 cut(s) 495, 557
CfoI GCGC 1 cut(s) 442
Cfr13I GGNCC 3 cut(s) 4, 857, 886
Csp6I GTAC 3 cut(s) 178, 256, 806
CviAII CATG 4 cut(s) 67, 181, 415, 840
CviQI GTAC 3 cut(s) 178, 256, 806
DdeI CTNAG 4 cut(s) 56, 399, 601, 906
DpnI GATC 6 cut(s) 22, 45, 234, 332, 462, 782
DpnII GATC 6 cut(s) 20, 43, 232, 330, 460, 780
DriI GACNNNNNGTC 2 cut(s) 157, 815
EaeI YGGCCR 1 cut(s) 836
Eam1104I CTCTTC 3 cut(s) 103, 531, 583
Eam1105I GACNNNNNGTC 2 cut(s) 157, 815
EarI CTCTTC 3 cut(s) 103, 531, 583
EciI GGCGGA 1 cut(s) 753
Eco130I CCWWGG 2 cut(s) 66, 130
Eco57I CTGAAG 1 cut(s) 579
EcoRI GAATTC 2 cut(s) 379, 897
EcoRII CCWGG 1 cut(s) 859
EcoT14I CCWWGG 2 cut(s) 66, 130
ErhI CCWWGG 2 cut(s) 66, 130
FaeI CATG 4 cut(s) 70, 184, 418, 843
FaqI GGGAC 2 cut(s) 764, 836
FatI CATG 4 cut(s) 66, 180, 414, 839
FblI GTMKAC 1 cut(s) 317
Fnu4HI GCNGC 3 cut(s) 642, 661, 791
FokI GGATG 2 cut(s) 185, 798
Fsp4HI GCNGC 3 cut(s) 642, 661, 791
FspBI CTAG 3 cut(s) 15, 104, 354
GlaI GCGC 1 cut(s) 441
GluI GCNGC 3 cut(s) 642, 661, 791
GsaI CCCAGC 1 cut(s) 424
HaeIII GGCC 6 cut(s) 6, 802, 838, 858, 864, 887
HapII CCGG 2 cut(s) 455, 734
HhaI GCGC 1 cut(s) 442
Hin1II CATG 4 cut(s) 70, 184, 418, 843
Hin6I GCGC 1 cut(s) 440
HinP1I GCGC 1 cut(s) 440
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HindIII AAGCTT 1 cut(s) 58
HinfI GANTC 5 cut(s) 10, 113, 492, 569, 599
HpaII CCGG 2 cut(s) 455, 734
HphI GGTGA 4 cut(s) 210, 470, 706, 739
Hpy166II GTNNAC 2 cut(s) 142, 318
Hpy188I TCNGA 5 cut(s) 43, 241, 400, 619, 935
Hpy188III TCNNGA 2 cut(s) 362, 557
Hpy8I GTNNAC 2 cut(s) 142, 318
HpyAV CCTTC 4 cut(s) 196, 300, 682, 740
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4V TGCA 3 cut(s) 414, 644, 722
HpyF10VI GCNNNNNNNGC 7 cut(s) 93, 539, 560, 638, 799, 870, 884
HpyF3I CTNAG 4 cut(s) 56, 399, 601, 906
Hsp92II CATG 4 cut(s) 70, 184, 418, 843
HspAI GCGC 1 cut(s) 440
Kzo9I GATC 6 cut(s) 20, 43, 232, 330, 460, 780
LguI GCTCTTC 1 cut(s) 103
LmnI GCTCC 1 cut(s) 559
Lsp1109I GCAGC 2 cut(s) 628, 672
LweI GCATC 1 cut(s) 256
MaeI CTAG 3 cut(s) 15, 104, 354
MaeIII GTNAC 1 cut(s) 514
MalI GATC 6 cut(s) 22, 45, 234, 332, 462, 782
MboI GATC 6 cut(s) 20, 43, 232, 330, 460, 780
MboII GAAGA 8 cut(s) 90, 275, 312, 548, 570, 573, 576, 697
MflI RGATCY 1 cut(s) 780
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 5 cut(s) 278, 379, 392, 403, 897
MlyI GAGTC 2 cut(s) 501, 593
MseI TTAA 2 cut(s) 761, 946
MslI CAYNNNNRTG 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 641
MspI CCGG 2 cut(s) 455, 734
MspR9I CCNGG 3 cut(s) 456, 735, 861
MvaI CCWGG 1 cut(s) 861
MwoI GCNNNNNNNGC 7 cut(s) 93, 539, 560, 638, 799, 870, 884
NciI CCSGG 2 cut(s) 456, 735
NcoI CCATGG 1 cut(s) 66
NdeII GATC 6 cut(s) 20, 43, 232, 330, 460, 780
NlaIII CATG 4 cut(s) 70, 184, 418, 843
NlaIV GGNNCC 4 cut(s) 207, 543, 782, 919
PciSI GCTCTTC 1 cut(s) 103
PcsI WCGNNNNNNNCGW 1 cut(s) 771
PfeI GAWTC 3 cut(s) 10, 113, 569
PkrI GCNGC 3 cut(s) 643, 662, 792
PleI GAGTC 2 cut(s) 500, 593
PpsI GAGTC 2 cut(s) 500, 593
Psp6I CCWGG 1 cut(s) 859
PspFI CCCAGC 1 cut(s) 420
PspGI CCWGG 1 cut(s) 859
PspN4I GGNNCC 4 cut(s) 207, 543, 782, 919
PspPI GGNCC 3 cut(s) 4, 857, 886
PstI CTGCAG 1 cut(s) 646
PstNI CAGNNNCTG 2 cut(s) 495, 557
PsuI RGATCY 1 cut(s) 780
PvuII CAGCTG 1 cut(s) 641
RsaI GTAC 3 cut(s) 179, 257, 807
RsaNI GTAC 3 cut(s) 178, 256, 806
RseI CAYNNNNRTG 1 cut(s) 185
SapI GCTCTTC 1 cut(s) 103
SaqAI TTAA 2 cut(s) 761, 946
SatI GCNGC 3 cut(s) 642, 661, 791
Sau3AI GATC 6 cut(s) 20, 43, 232, 330, 460, 780
Sau96I GGNCC 3 cut(s) 4, 857, 886
SchI GAGTC 2 cut(s) 501, 593
ScrFI CCNGG 3 cut(s) 456, 735, 861
SduI GDGCHC 1 cut(s) 312
SfaNI GCATC 1 cut(s) 256
SfcI CTRYAG 2 cut(s) 91, 642
SmiMI CAYNNNNRTG 1 cut(s) 185
SpeI ACTAGT 1 cut(s) 353
Sse9I AATT 5 cut(s) 278, 379, 392, 403, 897
SsiI CCGC 3 cut(s) 342, 738, 791
SspMI CTAG 3 cut(s) 15, 104, 354
StyD4I CCNGG 3 cut(s) 454, 733, 859
StyI CCWWGG 2 cut(s) 66, 130
TaaI ACNGT 1 cut(s) 210
TasI AATT 5 cut(s) 278, 379, 392, 403, 897
TatI WGTACW 1 cut(s) 177
TauI GCSGC 1 cut(s) 793
TfiI GAWTC 3 cut(s) 10, 113, 569
Tru1I TTAA 2 cut(s) 761, 946
Tru9I TTAA 2 cut(s) 761, 946
TscAI CASTG 5 cut(s) 231, 380, 392, 442, 670
TseI GCWGC 2 cut(s) 641, 660
TspDTI ATGAA 3 cut(s) 21, 215, 684
TspRI CASTG 5 cut(s) 231, 380, 392, 442, 670
XapI RAATTY 5 cut(s) 278, 379, 392, 403, 897
XmiI GTMKAC 1 cut(s) 317
XspI CTAG 3 cut(s) 15, 104, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.