AT1G14990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007436
Physical Location & Seq
Reverse (-)
5166913 .. 5168336
1424 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G14990.1

Sequence Viewer

Length: 369 bp
ATGATGATCTTGGATGTTTGCTCAGAGGTTATAAAGATCCAGAAGCTACGACGGGCTGTCTCTTACGCCGGATTCTACTGCTTCACTGCTGCCCTCACATTCTTCTATACAAACAACACAACAAGAGCAGGATATTCCAGGGGAGATCAGTTTTATGCATCTTACCCTGCTGGCACCGAACTTTTGACCGACACAGCTAAGCTGTACAAAGCGGCGCTTGGGAATTGCTATGAATCTGAAGATTGGGGTCCTGTTGAATTCTGCATAATGGCTAAGCATTTTGATCGCCAGGGAAAATCTCCATACGTTTACCACTCCCAATACATGGCTCACCTTCTATCTCAAGGCCAACTCGATGGAAGTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.76

Weight (kDa)

6.8

Isoelectric Point (pI)

44.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 32
AccB1I GGYRCC 1 cut(s) 173
AccB7I CCANNNNNTGG 1 cut(s) 325
AciI CCGC 1 cut(s) 212
AclWI GGATC 1 cut(s) 31
AcsI RAATTY 1 cut(s) 257
AcuI CTGAAG 1 cut(s) 258
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 325
AgsI TTSAA 1 cut(s) 257
AhdI GACNNNNNGTC 1 cut(s) 56
AjnI CCWGG 2 cut(s) 137, 288
AluBI AGCT 3 cut(s) 46, 197, 202
AluI AGCT 3 cut(s) 46, 197, 202
Alw26I GTCTC 1 cut(s) 64
AlwI GGATC 1 cut(s) 31
AoxI GGCC 1 cut(s) 346
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 1 cut(s) 257
AspLEI GCGC 1 cut(s) 217
AspS9I GGNCC 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 323
AvaII GGWCC 1 cut(s) 248
BanI GGYRCC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 76
BccI CCATC 1 cut(s) 350
BcgI CGANNNNNNTGC 2 cut(s) 266, 300
BciT130I CCWGG 2 cut(s) 139, 290
BcoDI GTCTC 1 cut(s) 64
BfaI CTAG 1 cut(s) 367
BfoI RGCGCY 1 cut(s) 218
BisI GCNGC 2 cut(s) 90, 213
BlpI GCTNAGC 2 cut(s) 198, 273
BlsI GCNGC 2 cut(s) 91, 214
Bme1390I CCNGG 2 cut(s) 139, 290
Bme18I GGWCC 1 cut(s) 248
BmeRI GACNNNNNGTC 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 2 cut(s) 175, 249
BmrFI CCNGG 2 cut(s) 139, 290
BmsI GCATC 1 cut(s) 167
Bpu1102I GCTNAGC 2 cut(s) 198, 273
BpuEI CTTGAG 1 cut(s) 327
BsaJI CCNNGG 2 cut(s) 138, 289
Bsc4I CCNNNNNNNGG 1 cut(s) 325
BseBI CCWGG 2 cut(s) 139, 290
BseDI CCNNGG 2 cut(s) 138, 289
BseGI GGATG 1 cut(s) 19
BseLI CCNNNNNNNGG 1 cut(s) 325
BseMII CTCAG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 76
BshFI GGCC 1 cut(s) 348
BshNI GGYRCC 1 cut(s) 173
BsiSI CCGG 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 325
BsmAI GTCTC 1 cut(s) 64
BsnI GGCC 1 cut(s) 348
Bsp1407I TGTACA 1 cut(s) 204
Bsp143I GATC 4 cut(s) 6, 36, 145, 283
Bsp1720I GCTNAGC 2 cut(s) 198, 273
BspACI CCGC 1 cut(s) 212
BspANI GGCC 1 cut(s) 348
BspCNI CTCAG 1 cut(s) 35
BspLI GGNNCC 2 cut(s) 175, 249
BspPI GGATC 1 cut(s) 31
BspT107I GGYRCC 1 cut(s) 173
BsrGI TGTACA 1 cut(s) 204
BssECI CCNNGG 2 cut(s) 138, 289
BssMI GATC 4 cut(s) 6, 36, 145, 283
Bst2UI CCWGG 2 cut(s) 139, 290
BstAUI TGTACA 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 172
BstDEI CTNAG 3 cut(s) 22, 198, 273
BstF5I GGATG 1 cut(s) 19
BstH2I RGCGCY 1 cut(s) 218
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 4 cut(s) 9, 39, 148, 286
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 4 cut(s) 6, 36, 145, 283
BstNI CCWGG 2 cut(s) 139, 290
BstSCI CCNGG 2 cut(s) 137, 288
BstV1I GCAGC 1 cut(s) 76
BstX2I RGATCY 1 cut(s) 36
BstXI CCANNNNNNTGG 1 cut(s) 356
BstYI RGATCY 1 cut(s) 36
BsuRI GGCC 1 cut(s) 348
BtsCI GGATG 1 cut(s) 19
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 172
CfoI GCGC 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 248
Csp6I GTAC 1 cut(s) 205
CviAII CATG 1 cut(s) 325
CviJI RGCY 8 cut(s) 46, 56, 197, 202, 272, 329, 348, 366
CviKI_1 RGCY 8 cut(s) 46, 56, 197, 202, 272, 329, 348, 366
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 3 cut(s) 22, 198, 273
DpnI GATC 4 cut(s) 8, 38, 147, 285
DpnII GATC 4 cut(s) 6, 36, 145, 283
DriI GACNNNNNGTC 1 cut(s) 56
Eam1105I GACNNNNNGTC 1 cut(s) 56
Eco47I GGWCC 1 cut(s) 248
Eco57I CTGAAG 1 cut(s) 258
EcoO109I RGGNCCY 1 cut(s) 248
EcoRI GAATTC 1 cut(s) 257
EcoRII CCWGG 2 cut(s) 137, 288
EcoT22I ATGCAT 1 cut(s) 160
FaeI CATG 1 cut(s) 328
FaiI YATR 7 cut(s) 32, 108, 156, 231, 266, 304, 326
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FatI CATG 1 cut(s) 324
Fnu4HI GCNGC 2 cut(s) 90, 213
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 2 cut(s) 90, 213
FspBI CTAG 1 cut(s) 367
GlaI GCGC 1 cut(s) 216
GluI GCNGC 2 cut(s) 90, 213
HaeII RGCGCY 1 cut(s) 218
HaeIII GGCC 1 cut(s) 348
HapII CCGG 1 cut(s) 69
HhaI GCGC 1 cut(s) 217
Hin1II CATG 1 cut(s) 328
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HinfI GANTC 2 cut(s) 72, 233
HpaII CCGG 1 cut(s) 69
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 2 cut(s) 25, 238
Hpy188III TCNNGA 1 cut(s) 40
Hpy8I GTNNAC 1 cut(s) 310
Hpy99I CGWCG 1 cut(s) 54
HpyAV CCTTC 1 cut(s) 344
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 2 cut(s) 158, 264
HpyF3I CTNAG 3 cut(s) 22, 198, 273
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 1 cut(s) 328
HspAI GCGC 1 cut(s) 215
Kzo9I GATC 4 cut(s) 6, 36, 145, 283
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 1 cut(s) 167
MaeI CTAG 1 cut(s) 367
MaeII ACGT 1 cut(s) 306
MalI GATC 4 cut(s) 8, 38, 147, 285
MboI GATC 4 cut(s) 6, 36, 145, 283
MboII GAAGA 2 cut(s) 94, 251
MflI RGATCY 1 cut(s) 36
MluCI AATT 2 cut(s) 223, 257
MnlI CCTC 2 cut(s) 19, 104
Mph1103I ATGCAT 1 cut(s) 160
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 2 cut(s) 139, 290
MvaI CCWGG 2 cut(s) 139, 290
NdeII GATC 4 cut(s) 6, 36, 145, 283
NlaIII CATG 1 cut(s) 328
NlaIV GGNNCC 2 cut(s) 175, 249
NsiI ATGCAT 1 cut(s) 160
PfeI GAWTC 2 cut(s) 72, 233
PflMI CCANNNNNTGG 1 cut(s) 325
PkrI GCNGC 2 cut(s) 91, 214
PpuMI RGGWCCY 1 cut(s) 248
PsiI TTATAA 1 cut(s) 32
Psp5II RGGWCCY 1 cut(s) 248
Psp6I CCWGG 2 cut(s) 137, 288
PspGI CCWGG 2 cut(s) 137, 288
PspN4I GGNNCC 2 cut(s) 175, 249
PspPI GGNCC 1 cut(s) 248
PspPPI RGGWCCY 1 cut(s) 248
PsuI RGATCY 1 cut(s) 36
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SatI GCNGC 2 cut(s) 90, 213
Sau3AI GATC 4 cut(s) 6, 36, 145, 283
Sau96I GGNCC 1 cut(s) 248
ScrFI CCNGG 2 cut(s) 139, 290
SetI ASST 6 cut(s) 30, 48, 199, 204, 309, 336
SfaNI GCATC 1 cut(s) 167
SinI GGWCC 1 cut(s) 248
SmlI CTYRAG 1 cut(s) 342
SmoI CTYRAG 1 cut(s) 342
Sse9I AATT 2 cut(s) 223, 257
SsiI CCGC 1 cut(s) 212
SspMI CTAG 1 cut(s) 367
StyD4I CCNGG 2 cut(s) 137, 288
TaiI ACGT 1 cut(s) 309
TaqI TCGA 1 cut(s) 354
TaqII GACCGA 1 cut(s) 203
TasI AATT 2 cut(s) 223, 257
TatI WGTACW 1 cut(s) 204
TauI GCSGC 1 cut(s) 215
TfiI GAWTC 2 cut(s) 72, 233
TscAI CASTG 1 cut(s) 91
TseI GCWGC 1 cut(s) 89
TspDTI ATGAA 1 cut(s) 246
TspRI CASTG 1 cut(s) 91
Van91I CCANNNNNTGG 1 cut(s) 325
VpaK11BI GGWCC 1 cut(s) 248
XapI RAATTY 1 cut(s) 257
XspI CTAG 1 cut(s) 367
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.