Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007436

Physical Location & Seq

Genomic Coordinates Forward (+)

31027276 .. 31029132

Gene Structure 1857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G325600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGATGAGGCTGTACGATGGCGTCAAAGAAATTCTAAAGATTCAGAAGTTCAGGCGAATTGTGTCATATGCTGGATTCTACTGCTTCACAGCAGTCTTGAGCTACGCTTACGCGAGCAATACAACCAGAGCTGGGTTTTCCAGAGGCGACCAATTCTATGCGTCTTACCCAGCCGGAACCGAGCTCTTGACGGACACAGCAAAGTTGTATAAAGCTGCTCTTGGTAATTGTTTCGAAAACGAAGAGTGGGGTCCCATTGAGTATTGCATCATGGCCAAACACTTTGAGCGACAGGGTAAAACACCCTATGCGTACCATGCCCAATACATGGCACACCTTCTATCTCATGGACAGCTTGATGGAAGTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

13.98

Weight (kDa)

8.39

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14990
fragaria_vesca	FvH4_4g19980 FvH4_4g19980
malus_domestica	MD13G1024900.v1.1 MD16G1027400.v1.1
prunus_persica	Prupe.1G325600_v2.0.a1
pyrus_communis	pycom13g02320 pycom16g02320
rosa_chinensis	RchiOBHm_Chr4g0425701 RchiOBHm_Chr4g0441361
rosa_laevigata	RLG00000006098 RLG00000007346
rosa_multiflora	Rmu_sc0003958.1_g000012 Rmu_sc0041998.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367680
rosa_rugosa	Rorug04G0205000 Rorug04G0332700.1
rosa_samantha	Rh4AG262100 Rh4AG384700 Rh4BG268400 Rh4CG279600 Rh4DG264000 Rh4DG391300
rosa_wichuraiana	Rw4G022660 Rw4G033210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	328
AccII	CGCG	1 cut(s)	113
AcoI	YGGCCR	1 cut(s)	273
AcsI	RAATTY	1 cut(s)	30
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	2 cut(s)	14, 314
AfiI	CCNNNNNNNGG	2 cut(s)	132, 328
AluBI	AGCT	5 cut(s)	102, 131, 184, 215, 355
AluI	AGCT	5 cut(s)	102, 131, 184, 215, 355
Alw21I	GWGCWC	1 cut(s)	186
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	1 cut(s)	215
ApoI	RAATTY	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	251
AsuII	TTCGAA	1 cut(s)	234
AvaII	GGWCC	1 cut(s)	251
BalI	TGGCCA	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	186
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	2 cut(s)	11, 353
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	3 cut(s)	178, 252, 253
BmsI	GCATC	1 cut(s)	276
Bpu14I	TTCGAA	1 cut(s)	234
BpuEI	CTTGAG	1 cut(s)	118
BsaHI	GRCGYC	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 328
BseLI	CCNNNNNNNGG	2 cut(s)	132, 328
BseXI	GCAGC	1 cut(s)	202
BseYI	CCCAGC	2 cut(s)	131, 169
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	1 cut(s)	275
BsiHKAI	GWGCWC	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	174
BslFI	GGGAC	1 cut(s)	237
BslI	CCNNNNNNNGG	2 cut(s)	132, 328
BsmFI	GGGAC	1 cut(s)	237
BsnI	GGCC	1 cut(s)	275
Bsp119I	TTCGAA	1 cut(s)	234
Bsp1286I	GDGCHC	1 cut(s)	186
BspANI	GGCC	1 cut(s)	275
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	3 cut(s)	178, 252, 253
BspT104I	TTCGAA	1 cut(s)	234
BssNI	GRCGYC	1 cut(s)	21
Bst6I	CTCTTC	1 cut(s)	237
BstACI	GRCGYC	1 cut(s)	21
BstBI	TTCGAA	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	115
BstFNI	CGCG	1 cut(s)	113
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	275
Cac8I	GCNNGC	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	251
CseI	GACGC	2 cut(s)	10, 150
Csp6I	GTAC	2 cut(s)	13, 313
CviAII	CATG	4 cut(s)	271, 317, 328, 347
CviJI	RGCY	8 cut(s)	10, 102, 131, 173, 184, 215, 275, 355
CviKI_1	RGCY	8 cut(s)	10, 102, 131, 173, 184, 215, 275, 355
CviQI	GTAC	2 cut(s)	13, 313
EaeI	YGGCCR	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Ecl136II	GAGCTC	1 cut(s)	184
Eco24I	GRGCYC	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	251
Eco53kI	GAGCTC	1 cut(s)	184
EcoICRI	GAGCTC	1 cut(s)	184
EcoO109I	RGGNCCY	1 cut(s)	251
EcoT38I	GRGCYC	1 cut(s)	186
FaeI	CATG	4 cut(s)	274, 320, 331, 350
FaiI	YATR	9 cut(s)	67, 69, 159, 210, 272, 309, 318, 329, 348
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
FaqI	GGGAC	1 cut(s)	237
FatI	CATG	4 cut(s)	270, 316, 327, 346
FauNDI	CATATG	1 cut(s)	67
Fnu4HI	GCNGC	1 cut(s)	216
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	216
GluI	GCNGC	1 cut(s)	216
GsaI	CCCAGC	2 cut(s)	135, 173
HaeIII	GGCC	1 cut(s)	275
HapII	CCGG	1 cut(s)	174
HgaI	GACGC	2 cut(s)	10, 150
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	4 cut(s)	274, 320, 331, 350
HinfI	GANTC	2 cut(s)	40, 75
HpaII	CCGG	1 cut(s)	174
Hpy188I	TCNGA	1 cut(s)	45
Hpy188III	TCNNGA	3 cut(s)	97, 141, 187
HpyAV	CCTTC	1 cut(s)	347
HpyCH4V	TGCA	1 cut(s)	267
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	4 cut(s)	274, 320, 331, 350
KflI	GGGWCCC	1 cut(s)	251
LpnPI	CCDG	8 cut(s)	37, 57, 117, 139, 154, 183, 187, 278
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	1 cut(s)	276
MboII	GAAGA	1 cut(s)	254
MhlI	GDGCHC	1 cut(s)	186
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	4 cut(s)	30, 57, 152, 226
MluNI	TGGCCA	1 cut(s)	275
MnlI	CCTC	1 cut(s)	137
Mox20I	TGGCCA	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	275
Msp20I	TGGCCA	1 cut(s)	275
MspI	CCGG	1 cut(s)	174
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	317
NdeI	CATATG	1 cut(s)	67
NlaIII	CATG	4 cut(s)	274, 320, 331, 350
NlaIV	GGNNCC	3 cut(s)	178, 252, 253
NspV	TTCGAA	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	40, 75
PflMI	CCANNNNNTGG	1 cut(s)	328
PkrI	GCNGC	1 cut(s)	217
PpuMI	RGGWCCY	1 cut(s)	251
Psp124BI	GAGCTC	1 cut(s)	186
Psp5II	RGGWCCY	1 cut(s)	251
PspFI	CCCAGC	2 cut(s)	131, 169
PspN4I	GGNNCC	3 cut(s)	178, 252, 253
PspPI	GGNCC	1 cut(s)	251
PspPPI	RGGWCCY	1 cut(s)	251
RsaI	GTAC	2 cut(s)	14, 314
RsaNI	GTAC	2 cut(s)	13, 313
SacI	GAGCTC	1 cut(s)	186
SatI	GCNGC	1 cut(s)	216
Sau96I	GGNCC	1 cut(s)	251
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	6 cut(s)	104, 133, 186, 217, 339, 357
SfaNI	GCATC	1 cut(s)	276
SfuI	TTCGAA	1 cut(s)	234
SinI	GGWCC	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
Sse9I	AATT	4 cut(s)	30, 57, 152, 226
SstI	GAGCTC	1 cut(s)	186
TaqI	TCGA	1 cut(s)	234
TasI	AATT	4 cut(s)	30, 57, 152, 226
TfiI	GAWTC	2 cut(s)	40, 75
TseI	GCWGC	1 cut(s)	215
TspGWI	ACGGA	1 cut(s)	206
Van91I	CCANNNNNTGG	1 cut(s)	328
VpaK11BI	GGWCC	1 cut(s)	251
XapI	RAATTY	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.