Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0007436

Physical Location & Seq

Genomic Coordinates Reverse (-)

1483591 .. 1484903

Gene Structure 1313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g02320.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAATCTGTACAATGGCTGCAAAGAGATTCTGAAGATTCAGAAGTTCCGGAGAATCGCGTCGTATGCCGGATTCTACTGCTTCACAGCAGTCCTGACCTACGCCTACACAAGCAATACAACTCGAGCTGGGTTTTCGAGAGCTGACCAGTTCTATGCTTCTTACCCCGCCGGAACCGAGCTCTTGACGGACACGGCAAAGTTGTATAAAGCTGCGCTTGGTAACTGTTTCGAAAACGAAGAATGGGGTCCGATTGAGTATTGCATCATGGCCAAACACTTTGAGCGACAGGGGAAAGGACCCTATGCTTATCATGCACATTACATGGCACACCTCCTATCTCACGGACAGCTCGATGGAAGTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

13.81

Weight (kDa)

8.32

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14990
fragaria_vesca	FvH4_4g19980 FvH4_4g19980
malus_domestica	MD13G1024900.v1.1 MD16G1027400.v1.1
prunus_persica	Prupe.1G325600_v2.0.a1
pyrus_communis	pycom13g02320 pycom16g02320
rosa_chinensis	RchiOBHm_Chr4g0425701 RchiOBHm_Chr4g0441361
rosa_laevigata	RLG00000006098 RLG00000007346
rosa_multiflora	Rmu_sc0003958.1_g000012 Rmu_sc0041998.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367680
rosa_rugosa	Rorug04G0205000 Rorug04G0332700.1
rosa_samantha	Rh4AG262100 Rh4AG384700 Rh4BG268400 Rh4CG279600 Rh4DG264000 Rh4DG391300
rosa_wichuraiana	Rw4G022660 Rw4G033210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	59
AccIII	TCCGGA	1 cut(s)	48
AciI	CCGC	1 cut(s)	168
AcoI	YGGCCR	1 cut(s)	270
AcuI	CTGAAG	1 cut(s)	53
AfaI	GTAC	1 cut(s)	11
AluBI	AGCT	5 cut(s)	128, 143, 181, 212, 352
AluI	AGCT	5 cut(s)	128, 143, 181, 212, 352
Alw21I	GWGCWC	1 cut(s)	183
Ama87I	CYCGRG	1 cut(s)	123
Aor13HI	TCCGGA	1 cut(s)	48
AoxI	GGCC	1 cut(s)	270
ApeKI	GCWGC	2 cut(s)	18, 212
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	2 cut(s)	248, 299
AsuII	TTCGAA	1 cut(s)	231
AvaI	CYCGRG	1 cut(s)	123
AvaII	GGWCC	2 cut(s)	248, 299
BalI	TGGCCA	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	183
BbvI	GCAGC	2 cut(s)	5, 199
BccI	CCATC	1 cut(s)	350
BceAI	ACGGC	1 cut(s)	210
BisI	GCNGC	2 cut(s)	19, 213
BlsI	GCNGC	2 cut(s)	20, 214
Bme18I	GGWCC	2 cut(s)	248, 299
BmeT110I	CYCGRG	1 cut(s)	123
BmgT120I	GGNCC	2 cut(s)	248, 299
BmiI	GGNNCC	3 cut(s)	175, 249, 301
BmsI	GCATC	1 cut(s)	273
Bpu14I	TTCGAA	1 cut(s)	231
BsaWI	WCCGGW	1 cut(s)	48
Bse1I	ACTGG	1 cut(s)	148
BseAI	TCCGGA	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	148
BseXI	GCAGC	2 cut(s)	5, 199
BseYI	CCCAGC	1 cut(s)	128
Bsh1236I	CGCG	1 cut(s)	59
BshFI	GGCC	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	183
BsiHKCI	CYCGRG	1 cut(s)	123
BsiSI	CCGG	3 cut(s)	49, 69, 171
BsnI	GGCC	1 cut(s)	272
BsoBI	CYCGRG	1 cut(s)	123
Bsp119I	TTCGAA	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp13I	TCCGGA	1 cut(s)	48
Bsp1407I	TGTACA	1 cut(s)	9
BspACI	CCGC	1 cut(s)	168
BspANI	GGCC	1 cut(s)	272
BspEI	TCCGGA	1 cut(s)	48
BspFNI	CGCG	1 cut(s)	59
BspLI	GGNNCC	3 cut(s)	175, 249, 301
BspT104I	TTCGAA	1 cut(s)	231
BsrGI	TGTACA	1 cut(s)	9
BsrI	ACTGG	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	227
BstAUI	TGTACA	1 cut(s)	9
BstBI	TTCGAA	1 cut(s)	231
BstFNI	CGCG	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 314
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	2 cut(s)	5, 199
BsuRI	GGCC	1 cut(s)	272
CfoI	GCGC	1 cut(s)	217
Cfr13I	GGNCC	2 cut(s)	248, 299
CseI	GACGC	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	3 cut(s)	268, 314, 325
CviJI	RGCY	7 cut(s)	18, 128, 143, 181, 212, 272, 352
CviKI_1	RGCY	7 cut(s)	18, 128, 143, 181, 212, 272, 352
CviQI	GTAC	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	270
Ecl136II	GAGCTC	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	183
Eco47I	GGWCC	2 cut(s)	248, 299
Eco53kI	GAGCTC	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	53
Eco88I	CYCGRG	1 cut(s)	123
EcoICRI	GAGCTC	1 cut(s)	181
EcoO109I	RGGNCCY	1 cut(s)	299
EcoT38I	GRGCYC	1 cut(s)	183
FaeI	CATG	3 cut(s)	271, 317, 328
FaiI	YATR	7 cut(s)	66, 156, 207, 269, 306, 315, 326
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FatI	CATG	3 cut(s)	267, 313, 324
FauI	CCCGC	1 cut(s)	175
Fnu4HI	GCNGC	2 cut(s)	19, 213
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	2 cut(s)	19, 213
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	2 cut(s)	19, 213
GsaI	CCCAGC	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	272
HapII	CCGG	3 cut(s)	49, 69, 171
HgaI	GACGC	1 cut(s)	48
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	3 cut(s)	271, 317, 328
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HinfI	GANTC	5 cut(s)	4, 28, 37, 54, 72
HpaII	CCGG	3 cut(s)	49, 69, 171
Hpy188I	TCNGA	3 cut(s)	33, 42, 252
Hpy188III	TCNNGA	4 cut(s)	49, 94, 138, 184
Hpy99I	CGWCG	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4V	TGCA	3 cut(s)	21, 264, 317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 314
Hsp92II	CATG	3 cut(s)	271, 317, 328
HspAI	GCGC	1 cut(s)	215
Kpn2I	TCCGGA	1 cut(s)	48
LpnPI	CCDG	7 cut(s)	62, 82, 107, 114, 161, 184, 275
Lsp1109I	GCAGC	2 cut(s)	5, 199
LweI	GCATC	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	221
MboII	GAAGA	2 cut(s)	46, 251
MhlI	GDGCHC	1 cut(s)	183
MlsI	TGGCCA	1 cut(s)	272
MluNI	TGGCCA	1 cut(s)	272
MnlI	CCTC	1 cut(s)	344
Mox20I	TGGCCA	1 cut(s)	272
MroI	TCCGGA	1 cut(s)	48
MscI	TGGCCA	1 cut(s)	272
Msp20I	TGGCCA	1 cut(s)	272
MspI	CCGG	3 cut(s)	49, 69, 171
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	2 cut(s)	65, 314
NlaIII	CATG	3 cut(s)	271, 317, 328
NlaIV	GGNNCC	3 cut(s)	175, 249, 301
NspV	TTCGAA	1 cut(s)	231
PaeR7I	CTCGAG	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	1 cut(s)	351
PfeI	GAWTC	5 cut(s)	4, 28, 37, 54, 72
PkrI	GCNGC	2 cut(s)	20, 214
PpuMI	RGGWCCY	1 cut(s)	299
Psp124BI	GAGCTC	1 cut(s)	183
Psp5II	RGGWCCY	1 cut(s)	299
PspFI	CCCAGC	1 cut(s)	128
PspN4I	GGNNCC	3 cut(s)	175, 249, 301
PspPI	GGNCC	2 cut(s)	248, 299
PspPPI	RGGWCCY	1 cut(s)	299
PspXI	VCTCGAGB	1 cut(s)	123
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SacI	GAGCTC	1 cut(s)	183
SatI	GCNGC	2 cut(s)	19, 213
Sau96I	GGNCC	2 cut(s)	248, 299
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	7 cut(s)	101, 130, 145, 183, 214, 336, 354
SfaNI	GCATC	1 cut(s)	273
Sfr274I	CTCGAG	1 cut(s)	123
SfuI	TTCGAA	1 cut(s)	231
SinI	GGWCC	2 cut(s)	248, 299
SlaI	CTCGAG	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	123
SmoI	CTYRAG	1 cut(s)	123
SsiI	CCGC	1 cut(s)	168
SstI	GAGCTC	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	227
TaqI	TCGA	4 cut(s)	124, 137, 231, 354
TatI	WGTACW	1 cut(s)	9
TfiI	GAWTC	5 cut(s)	4, 28, 37, 54, 72
TseI	GCWGC	2 cut(s)	18, 212
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	203, 360
VpaK11BI	GGWCC	2 cut(s)	248, 299
XhoI	CTCGAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.