Rmu_sc0041998.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0041998.1
OG0007436
Physical Location & Seq
Forward (+)
1 .. 656
656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0041998.1_g000001.1.cds

Sequence Viewer

Length: 375 bp
ggtttcctctccaagatgaggctctacaatggcttccttgacattctgaagattcataagtttcggagaatcgtgtcatgtactgggttctactgcttcacagcggtcttgagctacgcttacacaagcaacacaactagagctgggttttccagaggtgaccaattctatgcgtcctacccagctggaactgagctcctgacagaccaagctaagttgtataaagcttcccctggtaattgttttgaaaccgaagaatggggtcctattgagtactgcatcatggctaaacaccttgagcgtcaggggaaagggccttatgcgtaccatgctgtaagtttatacttgacagtgttcgtccagttttccgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

14.15

Weight (kDa)

8.67

Isoelectric Point (pI)

44.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 104
AcuI CTGAAG 1 cut(s) 68
AfaI GTAC 3 cut(s) 82, 275, 326
AfiI CCNNNNNNNGG 2 cut(s) 18, 258
AgsI TTSAA 1 cut(s) 248
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 6 cut(s) 114, 143, 185, 196, 212, 227
AluI AGCT 6 cut(s) 114, 143, 185, 196, 212, 227
Alw21I GWGCWC 1 cut(s) 198
AoxI GGCC 1 cut(s) 314
AspS9I GGNCC 2 cut(s) 263, 314
AsuHPI GGTGA 1 cut(s) 170
AvaII GGWCC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 198
BciT130I CCWGG 1 cut(s) 234
BfaI CTAG 1 cut(s) 138
BmcAI AGTACT 1 cut(s) 275
Bme1390I CCNGG 1 cut(s) 234
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 2 cut(s) 263, 314
BmiI GGNNCC 1 cut(s) 264
BmrFI CCNGG 1 cut(s) 234
BmrI ACTGGG 1 cut(s) 93
BmsI GCATC 1 cut(s) 288
BmuI ACTGGG 1 cut(s) 93
BpuEI CTTGAG 2 cut(s) 130, 317
BsaJI CCNNGG 1 cut(s) 232
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 258
Bse1I ACTGG 2 cut(s) 88, 361
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 232
BseLI CCNNNNNNNGG 2 cut(s) 18, 258
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 2 cut(s) 88, 361
BseYI CCCAGC 2 cut(s) 143, 181
BshFI GGCC 1 cut(s) 316
BsiHKAI GWGCWC 1 cut(s) 198
BslI CCNNNNNNNGG 2 cut(s) 18, 258
BsnI GGCC 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 198
BspACI CCGC 1 cut(s) 104
BspANI GGCC 1 cut(s) 316
BspCNI CTCAG 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 264
BsrI ACTGG 2 cut(s) 88, 361
BssECI CCNNGG 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 352
BstDEI CTNAG 2 cut(s) 192, 213
BstEII GGTNACC 1 cut(s) 158
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstNI CCWGG 1 cut(s) 234
BstPI GGTNACC 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 232
BsuRI GGCC 1 cut(s) 316
BtsIMutI CAGTG 1 cut(s) 357
Cfr13I GGNCC 2 cut(s) 263, 314
CseI GACGC 2 cut(s) 162, 290
Csp6I GTAC 3 cut(s) 81, 274, 325
CviAII CATG 3 cut(s) 78, 283, 329
CviQI GTAC 3 cut(s) 81, 274, 325
DdeI CTNAG 2 cut(s) 192, 213
Ecl136II GAGCTC 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 263
Eco53kI GAGCTC 1 cut(s) 196
Eco57I CTGAAG 1 cut(s) 68
Eco91I GGTNACC 1 cut(s) 158
EcoICRI GAGCTC 1 cut(s) 196
EcoO109I RGGNCCY 2 cut(s) 263, 314
EcoO65I GGTNACC 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 198
FaeI CATG 3 cut(s) 81, 286, 332
FaiI YATR 8 cut(s) 57, 79, 171, 222, 284, 321, 330, 343
FatI CATG 3 cut(s) 77, 282, 328
FriOI GRGCYC 1 cut(s) 198
FspBI CTAG 1 cut(s) 138
GsaI CCCAGC 2 cut(s) 147, 185
HaeIII GGCC 1 cut(s) 316
HgaI GACGC 2 cut(s) 162, 290
Hin1II CATG 3 cut(s) 81, 286, 332
HindIII AAGCTT 1 cut(s) 225
HinfI GANTC 2 cut(s) 52, 69
HphI GGTGA 1 cut(s) 170
Hpy188I TCNGA 3 cut(s) 48, 66, 370
Hpy188III TCNNGA 3 cut(s) 109, 153, 199
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4V TGCA 1 cut(s) 279
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 2 cut(s) 192, 213
Hsp92II CATG 3 cut(s) 81, 286, 332
LmnI GCTCC 1 cut(s) 201
LpnPI CCDG 9 cut(s) 69, 129, 166, 171, 195, 212, 219, 246, 290
LweI GCATC 1 cut(s) 288
MaeI CTAG 1 cut(s) 138
MaeIII GTNAC 1 cut(s) 158
MboII GAAGA 2 cut(s) 61, 266
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 2 cut(s) 164, 238
MnlI CCTC 3 cut(s) 12, 17, 149
MspA1I CMGCKG 2 cut(s) 104, 185
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 329
NlaIII CATG 3 cut(s) 81, 286, 332
NlaIV GGNNCC 1 cut(s) 264
NmuCI GTSAC 1 cut(s) 158
PfeI GAWTC 2 cut(s) 52, 69
PpuMI RGGWCCY 1 cut(s) 263
Psp124BI GAGCTC 1 cut(s) 198
Psp5II RGGWCCY 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 232
PspEI GGTNACC 1 cut(s) 158
PspFI CCCAGC 2 cut(s) 143, 181
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 264
PspPI GGNCC 2 cut(s) 263, 314
PspPPI RGGWCCY 1 cut(s) 263
PvuII CAGCTG 1 cut(s) 185
RsaI GTAC 3 cut(s) 82, 275, 326
RsaNI GTAC 3 cut(s) 81, 274, 325
SacI GAGCTC 1 cut(s) 198
Sau96I GGNCC 2 cut(s) 263, 314
ScaI AGTACT 1 cut(s) 275
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 1 cut(s) 198
SetI ASST 8 cut(s) 116, 145, 160, 187, 198, 214, 229, 297
SfaNI GCATC 1 cut(s) 288
SinI GGWCC 1 cut(s) 263
SmlI CTYRAG 2 cut(s) 109, 296
SmoI CTYRAG 2 cut(s) 109, 296
Sse9I AATT 2 cut(s) 164, 238
SsiI CCGC 1 cut(s) 104
SspMI CTAG 1 cut(s) 138
SstI GAGCTC 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 232
TaaI ACNGT 1 cut(s) 352
TasI AATT 2 cut(s) 164, 238
TatI WGTACW 2 cut(s) 80, 273
TfiI GAWTC 2 cut(s) 52, 69
TscAI CASTG 1 cut(s) 357
TseFI GTSAC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 158
TspDTI ATGAA 1 cut(s) 44
TspRI CASTG 1 cut(s) 357
VpaK11BI GGWCC 1 cut(s) 263
XspI CTAG 1 cut(s) 138
ZrmI AGTACT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.