Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0007436

Physical Location & Seq

Genomic Coordinates Reverse (-)

1756576 .. 1758480

Gene Structure 1905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1024900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAATGTGTTCAATGGATGCAAAGAAATTCTAAAGATTCAGAAGTTTCGGAGAATCGTGTCGTATGCCGGATTCTACTGCTTCACAGCAGTCCTGACCTACGCTTACACAAGCAATACAACCCGAGCTGGGTTTTCGAGAGCGGACCAGTTCTATGCTTCTTACCCAGCTGGAACCGAGCTCTTGACGGACACAGCAAAGTTGTATAAAGCTGCGCTTGGTAATTGTTTCGAAAACGAAGAATGGGGTCCGATTGAGTATTGCATTATGGCCAAACACTTCGAGCGACAGGGGAAAGGGCCCTATGCGTACCATGCTCATTACATGGCACACCTTCTATCGCACGGACAGCTCGATGGAAGTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

13.81

Weight (kDa)

8.32

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14990
fragaria_vesca	FvH4_4g19980 FvH4_4g19980
malus_domestica	MD13G1024900.v1.1 MD16G1027400.v1.1
prunus_persica	Prupe.1G325600_v2.0.a1
pyrus_communis	pycom13g02320 pycom16g02320
rosa_chinensis	RchiOBHm_Chr4g0425701 RchiOBHm_Chr4g0441361
rosa_laevigata	RLG00000006098 RLG00000007346
rosa_multiflora	Rmu_sc0003958.1_g000012 Rmu_sc0041998.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367680
rosa_rugosa	Rorug04G0205000 Rorug04G0332700.1
rosa_samantha	Rh4AG262100 Rh4AG384700 Rh4BG268400 Rh4CG279600 Rh4DG264000 Rh4DG391300
rosa_wichuraiana	Rw4G022660 Rw4G033210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	143
AciI	CCGC	1 cut(s)	143
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	1 cut(s)	27
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	1 cut(s)	129
AgsI	TTSAA	1 cut(s)	13
AluBI	AGCT	5 cut(s)	128, 170, 181, 212, 352
AluI	AGCT	5 cut(s)	128, 170, 181, 212, 352
Alw21I	GWGCWC	1 cut(s)	183
Ama87I	CYCGRG	1 cut(s)	123
AoxI	GGCC	2 cut(s)	270, 299
ApaI	GGGCCC	1 cut(s)	303
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	1 cut(s)	27
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	4 cut(s)	145, 248, 299, 300
AsuII	TTCGAA	1 cut(s)	231
AvaI	CYCGRG	1 cut(s)	123
AvaII	GGWCC	2 cut(s)	145, 248
BaeGI	GKGCMC	1 cut(s)	303
BalI	TGGCCA	1 cut(s)	272
BanII	GRGCYC	2 cut(s)	183, 303
Bbv12I	GWGCWC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	1 cut(s)	350
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
Bme18I	GGWCC	2 cut(s)	145, 248
BmeT110I	CYCGRG	1 cut(s)	123
BmgT120I	GGNCC	4 cut(s)	145, 248, 299, 300
BmiI	GGNNCC	3 cut(s)	175, 249, 301
BmsI	GCATC	1 cut(s)	8
Bpu14I	TTCGAA	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
Bse1I	ACTGG	1 cut(s)	148
BseGI	GGATG	1 cut(s)	23
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseNI	ACTGG	1 cut(s)	148
BseSI	GKGCMC	1 cut(s)	303
BseXI	GCAGC	1 cut(s)	199
BseYI	CCCAGC	2 cut(s)	128, 166
BshFI	GGCC	2 cut(s)	272, 301
BsiHKAI	GWGCWC	1 cut(s)	183
BsiHKCI	CYCGRG	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	129
BsnI	GGCC	2 cut(s)	272, 301
BsoBI	CYCGRG	1 cut(s)	123
Bsp119I	TTCGAA	1 cut(s)	231
Bsp120I	GGGCCC	1 cut(s)	299
Bsp1286I	GDGCHC	2 cut(s)	183, 303
BspACI	CCGC	1 cut(s)	143
BspANI	GGCC	2 cut(s)	272, 301
BspLI	GGNNCC	3 cut(s)	175, 249, 301
BspT104I	TTCGAA	1 cut(s)	231
BsrBI	CCGCTC	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	148
BstBI	TTCGAA	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 349
BstSLI	GKGCMC	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	199
BsuRI	GGCC	2 cut(s)	272, 301
BtsCI	GGATG	1 cut(s)	23
CfoI	GCGC	1 cut(s)	217
Cfr13I	GGNCC	4 cut(s)	145, 248, 299, 300
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	2 cut(s)	314, 325
CviJI	RGCY	7 cut(s)	128, 170, 181, 212, 272, 301, 352
CviKI_1	RGCY	7 cut(s)	128, 170, 181, 212, 272, 301, 352
CviQI	GTAC	1 cut(s)	310
EaeI	YGGCCR	1 cut(s)	270
Ecl136II	GAGCTC	1 cut(s)	181
Eco24I	GRGCYC	2 cut(s)	183, 303
Eco47I	GGWCC	2 cut(s)	145, 248
Eco53kI	GAGCTC	1 cut(s)	181
Eco88I	CYCGRG	1 cut(s)	123
EcoICRI	GAGCTC	1 cut(s)	181
EcoO109I	RGGNCCY	2 cut(s)	299, 300
EcoT38I	GRGCYC	2 cut(s)	183, 303
FaeI	CATG	2 cut(s)	317, 328
FaiI	YATR	7 cut(s)	66, 156, 207, 269, 306, 315, 326
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FatI	CATG	2 cut(s)	313, 324
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	1 cut(s)	30
FriOI	GRGCYC	2 cut(s)	183, 303
Fsp4HI	GCNGC	1 cut(s)	213
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	1 cut(s)	213
GsaI	CCCAGC	2 cut(s)	132, 170
HaeIII	GGCC	2 cut(s)	272, 301
HapII	CCGG	1 cut(s)	69
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	2 cut(s)	317, 328
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HinfI	GANTC	3 cut(s)	37, 54, 72
HpaII	CCGG	1 cut(s)	69
Hpy188I	TCNGA	3 cut(s)	42, 51, 252
Hpy188III	TCNNGA	3 cut(s)	94, 138, 184
HpyAV	CCTTC	1 cut(s)	344
HpyCH4V	TGCA	2 cut(s)	21, 264
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 349
Hsp92II	CATG	2 cut(s)	317, 328
HspAI	GCGC	1 cut(s)	215
LpnPI	CCDG	7 cut(s)	82, 107, 114, 156, 161, 180, 275
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	1 cut(s)	8
MbiI	CCGCTC	1 cut(s)	143
MboII	GAAGA	1 cut(s)	251
MhlI	GDGCHC	2 cut(s)	183, 303
MlsI	TGGCCA	1 cut(s)	272
MluCI	AATT	2 cut(s)	27, 223
MluNI	TGGCCA	1 cut(s)	272
Mox20I	TGGCCA	1 cut(s)	272
MroXI	GAANNNNTTC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	272
Msp20I	TGGCCA	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	2 cut(s)	314, 349
NlaIII	CATG	2 cut(s)	317, 328
NlaIV	GGNNCC	3 cut(s)	175, 249, 301
NspV	TTCGAA	1 cut(s)	231
PcsI	WCGNNNNNNNCGW	1 cut(s)	351
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	3 cut(s)	37, 54, 72
PkrI	GCNGC	1 cut(s)	214
Psp124BI	GAGCTC	1 cut(s)	183
PspFI	CCCAGC	2 cut(s)	128, 166
PspN4I	GGNNCC	3 cut(s)	175, 249, 301
PspOMI	GGGCCC	1 cut(s)	299
PspPI	GGNCC	4 cut(s)	145, 248, 299, 300
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SacI	GAGCTC	1 cut(s)	183
SatI	GCNGC	1 cut(s)	213
Sau96I	GGNCC	4 cut(s)	145, 248, 299, 300
SduI	GDGCHC	2 cut(s)	183, 303
SetI	ASST	7 cut(s)	101, 130, 172, 183, 214, 336, 354
SfaNI	GCATC	1 cut(s)	8
SfuI	TTCGAA	1 cut(s)	231
SinI	GGWCC	2 cut(s)	145, 248
Sse9I	AATT	2 cut(s)	27, 223
SsiI	CCGC	1 cut(s)	143
SstI	GAGCTC	1 cut(s)	183
TaqI	TCGA	4 cut(s)	137, 231, 282, 354
TasI	AATT	2 cut(s)	27, 223
TfiI	GAWTC	3 cut(s)	37, 54, 72
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	203, 360
VpaK11BI	GGWCC	2 cut(s)	145, 248
XapI	RAATTY	1 cut(s)	27
XmnI	GAANNNNTTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.