Rh4AG384700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0007436
Physical Location & Seq
Forward (+)
69088886 .. 69090000
1115 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG384700.1

Sequence Viewer

Length: 369 bp
ATGAGGCTCTACAATGGCTTCCTTGACATTCTGAAGATTCAGAAGTTTCGGAGAATCGTGTCATATACTGGGTTCTACTGCTTCACAGTGGTCTTGAGCTACGCTTACACAAGCAACACAACTAGAGCTGGGTTTTCCAGAGGTGACCAATTCTATGCGTCGTACCCAGCCGGAACTGAGCTTCTGACAGACCAAGCTAAGTTGTATAAAGCTGCCCTTGGTAATTGTTTTGAAACCCAAGAATGGGGTCCTATTGAGTACTGCATCATGGCTAAACACTTTGAGCGTCAGGGGAAAGGGCCTTATGCGTGCCATGCTCAATACATGGCACATCTTCTATCTCTTGGGCAACTTGATGGAAGTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.84

Weight (kDa)

8.67

Isoelectric Point (pI)

35.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 2 cut(s) 164, 260
AfiI CCNNNNNNNGG 2 cut(s) 243, 244
AgsI TTSAA 1 cut(s) 233
AluBI AGCT 5 cut(s) 99, 128, 181, 197, 212
AluI AGCT 5 cut(s) 99, 128, 181, 197, 212
AoxI GGCC 1 cut(s) 299
ApeKI GCWGC 1 cut(s) 212
AspS9I GGNCC 2 cut(s) 248, 299
AsuHPI GGTGA 1 cut(s) 155
AvaII GGWCC 1 cut(s) 248
BbvI GCAGC 1 cut(s) 199
BccI CCATC 1 cut(s) 350
BfaI CTAG 2 cut(s) 123, 367
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
BmcAI AGTACT 1 cut(s) 260
Bme18I GGWCC 1 cut(s) 248
BmgT120I GGNCC 2 cut(s) 248, 299
BmiI GGNNCC 1 cut(s) 249
BmrI ACTGGG 1 cut(s) 78
BmsI GCATC 1 cut(s) 273
BmuI ACTGGG 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 115
BsaJI CCNNGG 1 cut(s) 217
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 244
Bse1I ACTGG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 217
BseLI CCNNNNNNNGG 2 cut(s) 243, 244
BseMII CTCAG 1 cut(s) 168
BseNI ACTGG 1 cut(s) 73
BseXI GCAGC 1 cut(s) 199
BseYI CCCAGC 2 cut(s) 128, 166
BshFI GGCC 1 cut(s) 301
BsiSI CCGG 1 cut(s) 171
BslI CCNNNNNNNGG 2 cut(s) 243, 244
BsnI GGCC 1 cut(s) 301
BspANI GGCC 1 cut(s) 301
BspCNI CTCAG 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 249
BsrI ACTGG 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 217
BssT1I CCWWGG 1 cut(s) 217
Bst4CI ACNGT 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 310
BstDEI CTNAG 2 cut(s) 177, 198
BstEII GGTNACC 1 cut(s) 143
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstPI GGTNACC 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 199
BsuRI GGCC 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 310
Cfr13I GGNCC 2 cut(s) 248, 299
CseI GACGC 2 cut(s) 147, 275
Csp6I GTAC 2 cut(s) 163, 259
CviAII CATG 3 cut(s) 268, 314, 325
CviQI GTAC 2 cut(s) 163, 259
DdeI CTNAG 2 cut(s) 177, 198
Eco130I CCWWGG 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 248
Eco57I CTGAAG 1 cut(s) 53
Eco91I GGTNACC 1 cut(s) 143
EcoO109I RGGNCCY 2 cut(s) 248, 299
EcoO65I GGTNACC 1 cut(s) 143
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 3 cut(s) 271, 317, 328
FaiI YATR 8 cut(s) 64, 66, 156, 207, 269, 306, 315, 326
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FatI CATG 3 cut(s) 267, 313, 324
Fnu4HI GCNGC 1 cut(s) 213
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 2 cut(s) 123, 367
GluI GCNGC 1 cut(s) 213
GsaI CCCAGC 2 cut(s) 132, 170
HaeIII GGCC 1 cut(s) 301
HapII CCGG 1 cut(s) 171
HgaI GACGC 2 cut(s) 147, 275
Hin1II CATG 3 cut(s) 271, 317, 328
HinfI GANTC 2 cut(s) 37, 54
HpaII CCGG 1 cut(s) 171
HphI GGTGA 1 cut(s) 155
Hpy188I TCNGA 4 cut(s) 33, 42, 51, 186
Hpy188III TCNNGA 2 cut(s) 94, 138
Hpy99I CGWCG 1 cut(s) 163
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4V TGCA 1 cut(s) 264
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 2 cut(s) 177, 198
Hsp92II CATG 3 cut(s) 271, 317, 328
LpnPI CCDG 6 cut(s) 54, 114, 151, 180, 184, 275
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 1 cut(s) 273
MaeI CTAG 2 cut(s) 123, 367
MaeIII GTNAC 1 cut(s) 143
MboII GAAGA 2 cut(s) 46, 326
MluCI AATT 2 cut(s) 149, 223
MnlI CCTC 1 cut(s) 134
MspI CCGG 1 cut(s) 171
MwoI GCNNNNNNNGC 1 cut(s) 314
NlaIII CATG 3 cut(s) 271, 317, 328
NlaIV GGNNCC 1 cut(s) 249
NmuCI GTSAC 1 cut(s) 143
PfeI GAWTC 2 cut(s) 37, 54
PkrI GCNGC 1 cut(s) 214
PpuMI RGGWCCY 1 cut(s) 248
Psp5II RGGWCCY 1 cut(s) 248
PspEI GGTNACC 1 cut(s) 143
PspFI CCCAGC 2 cut(s) 128, 166
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 2 cut(s) 248, 299
PspPPI RGGWCCY 1 cut(s) 248
RsaI GTAC 2 cut(s) 164, 260
RsaNI GTAC 2 cut(s) 163, 259
SatI GCNGC 1 cut(s) 213
Sau96I GGNCC 2 cut(s) 248, 299
ScaI AGTACT 1 cut(s) 260
SetI ASST 6 cut(s) 101, 130, 145, 183, 199, 214
SfaNI GCATC 1 cut(s) 273
SinI GGWCC 1 cut(s) 248
SmlI CTYRAG 1 cut(s) 94
SmoI CTYRAG 1 cut(s) 94
Sse9I AATT 2 cut(s) 149, 223
SspMI CTAG 2 cut(s) 123, 367
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 1 cut(s) 88
TasI AATT 2 cut(s) 149, 223
TatI WGTACW 1 cut(s) 258
TfiI GAWTC 2 cut(s) 37, 54
TscAI CASTG 1 cut(s) 93
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 143
TspRI CASTG 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 248
XspI CTAG 2 cut(s) 123, 367
ZrmI AGTACT 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.