Rw4G033210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0007436
Physical Location & Seq
Forward (+)
60303456 .. 60304559
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G033210.1

Sequence Viewer

Length: 369 bp
ATGAGGCTCTACAATGGCTTCCTTGACATTGTGAAGATTCATAAGTTTCGGAGAATCGTGTCATATACTGGGTTCTACTGCTTCACAGCGGTCTTGAGCTACGCTTACACAAGCAACACAACTAGAGCTGGGTTTTCCAGAGGTGACCAATTCTATGCGTCCTACCCAGCTGGAACTGAGCTCCTGACAGACCAAGCTAAGTTGTATAAAGCTGCCCTTGGTAATTGTTTTGAAACCCAAGAATGGGGTCCTATTGAGTACTGCATCATGGCTAAACACTTTGAGCGTCAGGGGAAAGGGCCTTATGCGTACCATGCTCAATACATGGCACATCTTCCATCTCTTGGGCAACTTGATGGAAGTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.85

Weight (kDa)

8.75

Isoelectric Point (pI)

34.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 344
AciI CCGC 1 cut(s) 89
AfaI GTAC 2 cut(s) 260, 311
AfiI CCNNNNNNNGG 3 cut(s) 243, 244, 344
AgsI TTSAA 1 cut(s) 233
AluBI AGCT 6 cut(s) 99, 128, 170, 181, 197, 212
AluI AGCT 6 cut(s) 99, 128, 170, 181, 197, 212
Alw21I GWGCWC 1 cut(s) 183
AoxI GGCC 1 cut(s) 299
ApeKI GCWGC 1 cut(s) 212
AspS9I GGNCC 2 cut(s) 248, 299
AsuHPI GGTGA 1 cut(s) 155
AvaII GGWCC 1 cut(s) 248
BanII GRGCYC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 199
BccI CCATC 2 cut(s) 346, 350
BfaI CTAG 2 cut(s) 123, 367
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
BmcAI AGTACT 1 cut(s) 260
Bme18I GGWCC 1 cut(s) 248
BmgT120I GGNCC 2 cut(s) 248, 299
BmiI GGNNCC 1 cut(s) 249
BmrI ACTGGG 1 cut(s) 78
BmsI GCATC 1 cut(s) 273
BmuI ACTGGG 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 115
BsaJI CCNNGG 1 cut(s) 217
Bsc4I CCNNNNNNNGG 3 cut(s) 243, 244, 344
Bse1I ACTGG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 217
BseLI CCNNNNNNNGG 3 cut(s) 243, 244, 344
BseMII CTCAG 1 cut(s) 168
BseNI ACTGG 1 cut(s) 73
BseXI GCAGC 1 cut(s) 199
BseYI CCCAGC 2 cut(s) 128, 166
BshFI GGCC 1 cut(s) 301
BsiHKAI GWGCWC 1 cut(s) 183
BslI CCNNNNNNNGG 3 cut(s) 243, 244, 344
BsnI GGCC 1 cut(s) 301
Bsp1286I GDGCHC 1 cut(s) 183
BspACI CCGC 1 cut(s) 89
BspANI GGCC 1 cut(s) 301
BspCNI CTCAG 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 249
BsrI ACTGG 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 217
BssT1I CCWWGG 1 cut(s) 217
BstDEI CTNAG 2 cut(s) 177, 198
BstEII GGTNACC 1 cut(s) 143
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstPI GGTNACC 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 199
BsuRI GGCC 1 cut(s) 301
Cfr13I GGNCC 2 cut(s) 248, 299
CseI GACGC 2 cut(s) 147, 275
Csp6I GTAC 2 cut(s) 259, 310
CviAII CATG 3 cut(s) 268, 314, 325
CviQI GTAC 2 cut(s) 259, 310
DdeI CTNAG 2 cut(s) 177, 198
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 217
Eco24I GRGCYC 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 248
Eco53kI GAGCTC 1 cut(s) 181
Eco91I GGTNACC 1 cut(s) 143
EcoICRI GAGCTC 1 cut(s) 181
EcoO109I RGGNCCY 2 cut(s) 248, 299
EcoO65I GGTNACC 1 cut(s) 143
EcoT14I CCWWGG 1 cut(s) 217
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 3 cut(s) 271, 317, 328
FaiI YATR 9 cut(s) 42, 64, 66, 156, 207, 269, 306, 315, 326
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FatI CATG 3 cut(s) 267, 313, 324
Fnu4HI GCNGC 1 cut(s) 213
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 2 cut(s) 123, 367
GluI GCNGC 1 cut(s) 213
GsaI CCCAGC 2 cut(s) 132, 170
HaeIII GGCC 1 cut(s) 301
HgaI GACGC 2 cut(s) 147, 275
Hin1II CATG 3 cut(s) 271, 317, 328
HinfI GANTC 2 cut(s) 37, 54
HphI GGTGA 1 cut(s) 155
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 3 cut(s) 94, 138, 184
HpyCH4V TGCA 1 cut(s) 264
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 2 cut(s) 177, 198
Hsp92II CATG 3 cut(s) 271, 317, 328
LmnI GCTCC 1 cut(s) 186
LpnPI CCDG 7 cut(s) 54, 114, 151, 156, 180, 197, 275
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 1 cut(s) 273
MaeI CTAG 2 cut(s) 123, 367
MaeIII GTNAC 1 cut(s) 143
MboII GAAGA 2 cut(s) 46, 326
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 2 cut(s) 149, 223
MnlI CCTC 1 cut(s) 134
MspA1I CMGCKG 2 cut(s) 89, 170
MwoI GCNNNNNNNGC 1 cut(s) 314
NlaIII CATG 3 cut(s) 271, 317, 328
NlaIV GGNNCC 1 cut(s) 249
NmuCI GTSAC 1 cut(s) 143
PfeI GAWTC 2 cut(s) 37, 54
PflMI CCANNNNNTGG 1 cut(s) 344
PkrI GCNGC 1 cut(s) 214
PpuMI RGGWCCY 1 cut(s) 248
Psp124BI GAGCTC 1 cut(s) 183
Psp5II RGGWCCY 1 cut(s) 248
PspEI GGTNACC 1 cut(s) 143
PspFI CCCAGC 2 cut(s) 128, 166
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 2 cut(s) 248, 299
PspPPI RGGWCCY 1 cut(s) 248
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 2 cut(s) 260, 311
RsaNI GTAC 2 cut(s) 259, 310
SacI GAGCTC 1 cut(s) 183
SatI GCNGC 1 cut(s) 213
Sau96I GGNCC 2 cut(s) 248, 299
ScaI AGTACT 1 cut(s) 260
SduI GDGCHC 1 cut(s) 183
SetI ASST 7 cut(s) 101, 130, 145, 172, 183, 199, 214
SfaNI GCATC 1 cut(s) 273
SinI GGWCC 1 cut(s) 248
SmlI CTYRAG 1 cut(s) 94
SmoI CTYRAG 1 cut(s) 94
Sse9I AATT 2 cut(s) 149, 223
SsiI CCGC 1 cut(s) 89
SspMI CTAG 2 cut(s) 123, 367
SstI GAGCTC 1 cut(s) 183
StyI CCWWGG 1 cut(s) 217
TasI AATT 2 cut(s) 149, 223
TatI WGTACW 1 cut(s) 258
TfiI GAWTC 2 cut(s) 37, 54
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 29
Van91I CCANNNNNTGG 1 cut(s) 344
VpaK11BI GGWCC 1 cut(s) 248
XspI CTAG 2 cut(s) 123, 367
ZrmI AGTACT 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.