Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007436

Physical Location & Seq

Genomic Coordinates Forward (+)

23419949 .. 23421339

Gene Structure 1391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g19980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGATGCGGCTCTACAATGGCTTCCTCGACATTCTAAAGATTCAGAAGTTCCGGAGAATCGTGTCATATACTGGCTTCTACTGCTTCACTGCGGTCTTGAGCTACGCTTACACAAGCAACACAACTAGAGCTGGGTTCTCCAGAGGTGACCAATTCTATGCGTCTTACCCGGCTGGAACTGAGCTCTTGACTGACCAAGCTAAGTTGTATAAAGCAGCACTTGGTAATTGTTTTGAAACTGAAGAATGGGGTCCTATTGAGTACTGCATCATGGCTAAACACTTTGAGCGCCAAGGCAAAGGGCCTTATGCTTACCATGCTTACATGGCACATCTTCTGTCTCTTGGACAACTTGATGGAAGTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

13.88

Weight (kDa)

8.4

Isoelectric Point (pI)

33.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14990
fragaria_vesca	FvH4_4g19980 FvH4_4g19980
malus_domestica	MD13G1024900.v1.1 MD16G1027400.v1.1
prunus_persica	Prupe.1G325600_v2.0.a1
pyrus_communis	pycom13g02320 pycom16g02320
rosa_chinensis	RchiOBHm_Chr4g0425701 RchiOBHm_Chr4g0441361
rosa_laevigata	RLG00000006098 RLG00000007346
rosa_multiflora	Rmu_sc0003958.1_g000012 Rmu_sc0041998.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367680
rosa_rugosa	Rorug04G0205000 Rorug04G0332700.1
rosa_samantha	Rh4AG262100 Rh4AG384700 Rh4BG268400 Rh4CG279600 Rh4DG264000 Rh4DG391300
rosa_wichuraiana	Rw4G022660 Rw4G033210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	51
AciI	CCGC	2 cut(s)	7, 92
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	1 cut(s)	263
AgsI	TTSAA	1 cut(s)	236
AluBI	AGCT	4 cut(s)	102, 131, 184, 200
AluI	AGCT	4 cut(s)	102, 131, 184, 200
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	1 cut(s)	345
Aor13HI	TCCGGA	1 cut(s)	51
AoxI	GGCC	1 cut(s)	302
ApeKI	GCWGC	1 cut(s)	215
AspLEI	GCGC	1 cut(s)	291
AspS9I	GGNCC	2 cut(s)	251, 302
AsuC2I	CCSGG	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	186
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	227
BccI	CCATC	1 cut(s)	350
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	345
BfaI	CTAG	2 cut(s)	126, 367
BfoI	RGCGCY	1 cut(s)	292
BisI	GCNGC	2 cut(s)	8, 216
BlsI	GCNGC	2 cut(s)	9, 217
BmcAI	AGTACT	1 cut(s)	263
Bme1390I	CCNGG	1 cut(s)	170
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	2 cut(s)	251, 302
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	1 cut(s)	170
BmsI	GCATC	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	124
BpuEI	CTTGAG	1 cut(s)	118
BpuMI	CCSGG	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	292
BsaWI	WCCGGW	1 cut(s)	51
Bse1I	ACTGG	1 cut(s)	76
BseAI	TCCGGA	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	292
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	76
BseXI	GCAGC	1 cut(s)	227
BseYI	CCCAGC	1 cut(s)	131
BshFI	GGCC	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	186
BsiSI	CCGG	2 cut(s)	52, 170
BsmAI	GTCTC	1 cut(s)	345
BsnI	GGCC	1 cut(s)	304
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp13I	TCCGGA	1 cut(s)	51
BspACI	CCGC	2 cut(s)	7, 92
BspANI	GGCC	1 cut(s)	304
BspCNI	CTCAG	1 cut(s)	172
BspEI	TCCGGA	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	292
BssT1I	CCWWGG	1 cut(s)	292
BstDEI	CTNAG	2 cut(s)	180, 201
BstEII	GGTNACC	1 cut(s)	146
BstH2I	RGCGCY	1 cut(s)	292
BstHHI	GCGC	1 cut(s)	291
BstMAI	GTCTC	1 cut(s)	345
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 317, 326
BstPI	GGTNACC	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	227
BsuRI	GGCC	1 cut(s)	304
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	87
CfoI	GCGC	1 cut(s)	291
Cfr13I	GGNCC	2 cut(s)	251, 302
CseI	GACGC	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	3 cut(s)	271, 317, 325
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	2 cut(s)	180, 201
Ecl136II	GAGCTC	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	251
Eco53kI	GAGCTC	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	261
Eco91I	GGTNACC	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	184
EcoO109I	RGGNCCY	2 cut(s)	251, 302
EcoO65I	GGTNACC	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	292
FaeI	CATG	3 cut(s)	274, 320, 328
FaiI	YATR	8 cut(s)	67, 69, 159, 210, 272, 309, 318, 326
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
FatI	CATG	3 cut(s)	270, 316, 324
Fnu4HI	GCNGC	2 cut(s)	8, 216
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	2 cut(s)	8, 216
FspBI	CTAG	2 cut(s)	126, 367
GlaI	GCGC	1 cut(s)	290
GluI	GCNGC	2 cut(s)	8, 216
GsaI	CCCAGC	1 cut(s)	135
GsuI	CTGGAG	1 cut(s)	124
HaeII	RGCGCY	1 cut(s)	292
HaeIII	GGCC	1 cut(s)	304
HapII	CCGG	2 cut(s)	52, 170
HgaI	GACGC	1 cut(s)	150
HhaI	GCGC	1 cut(s)	291
Hin1II	CATG	3 cut(s)	274, 320, 328
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HinfI	GANTC	2 cut(s)	40, 57
HpaII	CCGG	2 cut(s)	52, 170
HphI	GGTGA	1 cut(s)	158
Hpy188I	TCNGA	1 cut(s)	45
Hpy188III	TCNNGA	4 cut(s)	52, 97, 141, 187
HpyCH4V	TGCA	1 cut(s)	267
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 317, 326
HpyF3I	CTNAG	2 cut(s)	180, 201
Hsp92II	CATG	3 cut(s)	274, 320, 328
HspAI	GCGC	1 cut(s)	289
Kpn2I	TCCGGA	1 cut(s)	51
LpnPI	CCDG	6 cut(s)	57, 65, 117, 154, 159, 183
Lsp1109I	GCAGC	1 cut(s)	227
LweI	GCATC	1 cut(s)	276
MaeI	CTAG	2 cut(s)	126, 367
MaeIII	GTNAC	1 cut(s)	146
MboII	GAAGA	2 cut(s)	254, 326
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	2 cut(s)	152, 226
MnlI	CCTC	2 cut(s)	35, 137
MroI	TCCGGA	1 cut(s)	51
MspI	CCGG	2 cut(s)	52, 170
MspR9I	CCNGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	3 cut(s)	81, 317, 326
NciI	CCSGG	1 cut(s)	170
NlaIII	CATG	3 cut(s)	274, 320, 328
NlaIV	GGNNCC	1 cut(s)	252
NmuCI	GTSAC	1 cut(s)	146
PfeI	GAWTC	2 cut(s)	40, 57
PkrI	GCNGC	2 cut(s)	9, 217
PpuMI	RGGWCCY	1 cut(s)	251
Psp124BI	GAGCTC	1 cut(s)	186
Psp5II	RGGWCCY	1 cut(s)	251
PspEI	GGTNACC	1 cut(s)	146
PspFI	CCCAGC	1 cut(s)	131
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	2 cut(s)	251, 302
PspPPI	RGGWCCY	1 cut(s)	251
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SacI	GAGCTC	1 cut(s)	186
SatI	GCNGC	2 cut(s)	8, 216
Sau96I	GGNCC	2 cut(s)	251, 302
ScaI	AGTACT	1 cut(s)	263
ScrFI	CCNGG	1 cut(s)	170
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	5 cut(s)	104, 133, 148, 186, 202
SfaNI	GCATC	1 cut(s)	276
SinI	GGWCC	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
Sse9I	AATT	2 cut(s)	152, 226
SsiI	CCGC	2 cut(s)	7, 92
SspMI	CTAG	2 cut(s)	126, 367
SstI	GAGCTC	1 cut(s)	186
StyD4I	CCNGG	1 cut(s)	168
StyI	CCWWGG	1 cut(s)	292
TaqI	TCGA	1 cut(s)	27
TasI	AATT	2 cut(s)	152, 226
TatI	WGTACW	1 cut(s)	261
TauI	GCSGC	1 cut(s)	10
TfiI	GAWTC	2 cut(s)	40, 57
TscAI	CASTG	1 cut(s)	94
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	146
TspRI	CASTG	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	251
XspI	CTAG	2 cut(s)	126, 367
ZrmI	AGTACT	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.