AT1G15310

Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
5268891 .. 5272058
3168 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G15310.1

Sequence Viewer

Length: 1440 bp
ATGGTGTTGGCGGAGCTCGGCGGCCGGATAACCCGCGCCATACAGCAGATGAACAATGTGACAATAATCGATGAAAAGGTTTTGAATGATTTCTTAAACGAGATTACTCGCGCTTTGCTCCAGTCCGATGTTTCTTTTGGCCTTGTGGAAAAGATGCAGACCAATATTAAGAAGATCGTTAACCTCGACGATCTAGCAGCTGGCCACAACAAACGCCTGATCATCGAGCAGGCTATCTTCAAGGAACTCTGTAGGATGCTGGATCCAGGAAAGCCTGCCTTTGCCCCCAAAAAGGCCAAACCTAGTGTAGTGATGTTCGTCGGTTTACAAGGTGCTGGAAAAACCACAACATGTACCAAGTATGCTTACTATCATCAGAAGAAAGGGTACAAAGCAGCTCTAGTGTGTGCGGATACTTTCAGGGCCGGTGCTTTTGATCAGCTGAAACAGAATGCCACCAAGGCTAAGATCCCCTTTTATGGAAGCTACACAGAATCCGATCCTGTGAAAATTGCTGTTGAGGGAGTTGATAGGTTCAAGAAAGAAAAGTGTGATCTTATTATTGTTGACACCAGTGGTCGCCATAAACAAGCAGCTTCTCTCTTTGAAGAAATGCGTCAAGTTGCTGAAGCAACGGAACCAGATCTTGTTATATTTGTTATGGATAGCAGTATTGGTCAAGCTGCATTTGAACAAGCTGAAGCTTTTAAGGAAACTGTATCTGTTGGAGCTGTAATTATTACTAAGATGGACGGCCATGCCAAGGGAGGTGGTGCTCTTAGCGCTGTTGCAGCTACAAAAAGTCCTGTGATATTCATTGGAACAGGAGAGCATATGGATGAGTTTGAAGTGTTTGACGTTAAACCATTTGTCAGCCGTCTCTTAGGAAAGGGTGATTGGTCTGGACTCGTGGATAAACTACAAGAGGTGGTACCTAAAGATCTACAGAATGAACTTGTAGAAAATCTCTCTCAGGGTAACTTTACGTTGAGAAGTATGTACGACCAGTTCCAGTGCTCTCTGCGGATTCCACTTAATCAGCTTTTCTCGATGCTGCCTGGAATTAGTGCTGAAATGATGCCGAAAGGACATGGTGAAGAAAGCCGAGTGAAGATGAAGCGATACATGACAATGATGGATTCTATGACAAATAAAGAACTTGACAGCCCAAACCCAAAGATTTTTAACGAGTCAAGGATAATGAGGATAGCGAGAGGGTCAGGGAGGTTAGTAAGAGAAGTGATGGAGATGTTGGAAGAGTACAAGAGGATAGCAAAGACAATGAAAGGGATCAAGATCCCAAAGAACGGAGACATGAGCAAGGTCATACCGCCTCAGATGCTAAAACAGATGGGCGGCATGAGCGGTCTGCAGAGTCTCATGAAGCAGATGGGTTCGGCTAAGGACATGATGGGAATGTTTGGTGGCGGAGGCAAGTAG

Protein Analysis

479

Amino Acids

53.01

Weight (kDa)

9.1

Isoelectric Point (pI)

38.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP54_N PF02881 6 - 83 5.4e-11 SRP54-type protein, helical bundle domain
SRP54 PF00448 101 - 296 3.6e-78 SRP54-type protein, GTPase domain
cobW PF02492 103 - 253 2.5e-06 CobW/HypB/UreG, nucleotide-binding domain
SRP_SPB PF02978 327 - 428 6.5e-24 Signal peptide binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0009104)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 931
AccB1I GGYRCC 1 cut(s) 931
AccBSI CCGCTC 1 cut(s) 1365
AccII CGCG 2 cut(s) 36, 111
AciI CCGC 9 cut(s) 11, 21, 34, 410, 1024, 1331, 1356, 1365, 1428
AclWI GGATC 6 cut(s) 257, 270, 463, 494, 1291, 1298
AcoI YGGCCR 3 cut(s) 22, 202, 754
AcuI CTGAAG 2 cut(s) 648, 720
AfaI GTAC 5 cut(s) 355, 389, 933, 1001, 1262
AfeI AGCGCT 1 cut(s) 784
AfiI CCNNNNNNNGG 4 cut(s) 292, 479, 763, 1307
AflIII ACRYGT 1 cut(s) 350
AgsI TTSAA 6 cut(s) 85, 241, 538, 608, 692, 848
AjnI CCWGG 2 cut(s) 265, 1057
AjuI GAANNNNNNNTTGG 2 cut(s) 880, 912
Alw21I GWGCWC 3 cut(s) 18, 778, 1019
Alw26I GTCTC 3 cut(s) 884, 1305, 1382
AlwI GGATC 6 cut(s) 257, 270, 463, 494, 1291, 1298
Aor51HI AGCGCT 1 cut(s) 784
AoxI GGCC 6 cut(s) 22, 139, 202, 294, 423, 754
ApeKI GCWGC 6 cut(s) 197, 395, 593, 683, 791, 1054
Asp700I GAANNNNTTC 1 cut(s) 89
Asp718I GGTACC 1 cut(s) 931
AspLEI GCGC 3 cut(s) 38, 113, 785
AspS9I GGNCC 1 cut(s) 423
AsuHPI GGTGA 2 cut(s) 905, 1106
BalI TGGCCA 1 cut(s) 204
BamHI GGATCC 1 cut(s) 262
BanI GGYRCC 1 cut(s) 931
BanII GRGCYC 1 cut(s) 18
BarI GAAGNNNNNNTAC 2 cut(s) 371, 403
BauI CACGAG 1 cut(s) 908
Bbv12I GWGCWC 3 cut(s) 18, 778, 1019
BbvI GCAGC 6 cut(s) 209, 407, 605, 670, 803, 1041
BccI CCATC 6 cut(s) 742, 1129, 1237, 1345, 1384, 1405
BceAI ACGGC 2 cut(s) 769, 861
BciT130I CCWGG 2 cut(s) 267, 1059
BciVI GTATCC 1 cut(s) 406
BclI TGATCA 2 cut(s) 219, 436
BcoDI GTCTC 3 cut(s) 884, 1305, 1382
BfaI CTAG 3 cut(s) 194, 303, 401
BfmI CTRYAG 3 cut(s) 250, 944, 1370
BfoI RGCGCY 1 cut(s) 786
BfuI GTATCC 1 cut(s) 406
BglI GCCNNNNNGGC 1 cut(s) 461
BglII AGATCT 2 cut(s) 643, 940
BisI GCNGC 8 cut(s) 22, 198, 396, 594, 684, 792, 1055, 1357
BlsI GCNGC 8 cut(s) 23, 199, 397, 595, 685, 793, 1056, 1358
Bme1390I CCNGG 2 cut(s) 267, 1059
BmgT120I GGNCC 1 cut(s) 423
BmiI GGNNCC 3 cut(s) 264, 639, 933
BmrFI CCNGG 2 cut(s) 267, 1059
BmsI GCATC 5 cut(s) 144, 246, 1041, 1068, 1329
BpmI CTGGAG 1 cut(s) 104
Bpu10I CCTNAGC 1 cut(s) 1401
Bsa29I ATCGAT 1 cut(s) 69
BsaBI GATNNNNATC 1 cut(s) 1295
BsaJI CCNNGG 2 cut(s) 459, 762
Bsc4I CCNNNNNNNGG 4 cut(s) 292, 479, 763, 1307
Bse118I RCCGGY 1 cut(s) 425
Bse1I ACTGG 4 cut(s) 121, 573, 1006, 1012
Bse8I GATNNNNATC 1 cut(s) 1295
BseBI CCWGG 2 cut(s) 267, 1059
BseCI ATCGAT 1 cut(s) 69
BseDI CCNNGG 2 cut(s) 459, 762
BseGI GGATG 2 cut(s) 261, 844
BseJI GATNNNNATC 1 cut(s) 1295
BseLI CCNNNNNNNGG 4 cut(s) 292, 479, 763, 1307
BseMII CTCAG 2 cut(s) 986, 1349
BseNI ACTGG 4 cut(s) 121, 573, 1006, 1012
BseX3I CGGCCG 1 cut(s) 22
BseXI GCAGC 6 cut(s) 209, 407, 605, 670, 803, 1041
Bsh1236I CGCG 2 cut(s) 36, 111
Bsh1285I CGRYCG 1 cut(s) 25
BshFI GGCC 6 cut(s) 24, 141, 204, 296, 425, 756
BshNI GGYRCC 1 cut(s) 931
BshVI ATCGAT 1 cut(s) 69
BsiEI CGRYCG 1 cut(s) 25
BsiHKAI GWGCWC 3 cut(s) 18, 778, 1019
BsiSI CCGG 2 cut(s) 25, 426
BslI CCNNNNNNNGG 4 cut(s) 292, 479, 763, 1307
BsmAI GTCTC 3 cut(s) 884, 1305, 1382
BsmBI CGTCTC 1 cut(s) 884
BsmI GAATGC 1 cut(s) 457
BsnI GGCC 6 cut(s) 24, 141, 204, 296, 425, 756
Bsp1286I GDGCHC 3 cut(s) 18, 778, 1019
BspACI CCGC 9 cut(s) 11, 21, 34, 410, 1024, 1331, 1356, 1365, 1428
BspANI GGCC 6 cut(s) 24, 141, 204, 296, 425, 756
BspCNI CTCAG 2 cut(s) 985, 1348
BspDI ATCGAT 1 cut(s) 69
BspFNI CGCG 2 cut(s) 36, 111
BspHI TCATGA 1 cut(s) 1380
BspLI GGNNCC 3 cut(s) 264, 639, 933
BspMAI CTGCAG 1 cut(s) 1374
BspPI GGATC 6 cut(s) 257, 270, 463, 494, 1291, 1298
BspT107I GGYRCC 1 cut(s) 931
BsrBI CCGCTC 1 cut(s) 1365
BsrFI RCCGGY 1 cut(s) 425
BsrI ACTGG 4 cut(s) 121, 573, 1006, 1012
BssAI RCCGGY 1 cut(s) 425
BssECI CCNNGG 2 cut(s) 459, 762
BssSI CACGAG 1 cut(s) 908
BssT1I CCWWGG 2 cut(s) 459, 762
Bst2BI CACGAG 1 cut(s) 908
Bst2UI CCWGG 2 cut(s) 267, 1059
Bst4CI ACNGT 1 cut(s) 718
Bst6I CTCTTC 1 cut(s) 1251
BstC8I GCNNGC 3 cut(s) 202, 231, 276
BstDEI CTNAG 7 cut(s) 465, 744, 779, 883, 972, 1335, 1401
BstF5I GGATG 2 cut(s) 261, 844
BstFNI CGCG 2 cut(s) 36, 111
BstH2I RGCGCY 1 cut(s) 786
BstHHI GCGC 3 cut(s) 38, 113, 785
BstMAI GTCTC 3 cut(s) 884, 1305, 1382
BstMCI CGRYCG 1 cut(s) 25
BstMWI GCNNNNNNNGC 5 cut(s) 461, 782, 791, 1339, 1362
BstNI CCWGG 2 cut(s) 267, 1059
BstNSI RCATGY 1 cut(s) 354
BstSCI CCNGG 2 cut(s) 265, 1057
BstSFI CTRYAG 3 cut(s) 250, 944, 1370
BstUI CGCG 2 cut(s) 36, 111
BstV1I GCAGC 6 cut(s) 209, 407, 605, 670, 803, 1041
BstX2I RGATCY 5 cut(s) 262, 468, 643, 940, 1296
BstYI RGATCY 5 cut(s) 262, 468, 643, 940, 1296
BstZI CGGCCG 1 cut(s) 22
Bsu15I ATCGAT 1 cut(s) 69
BsuI GTATCC 1 cut(s) 406
BsuRI GGCC 6 cut(s) 24, 141, 204, 296, 425, 756
BsuTUI ATCGAT 1 cut(s) 69
BtsCI GGATG 2 cut(s) 261, 844
BtsIMutI CAGTG 2 cut(s) 580, 1019
Cac8I GCNNGC 3 cut(s) 202, 231, 276
CciI TCATGA 1 cut(s) 1380
CfoI GCGC 3 cut(s) 38, 113, 785
Cfr10I RCCGGY 1 cut(s) 425
Cfr13I GGNCC 1 cut(s) 423
ClaI ATCGAT 1 cut(s) 69
CseI GACGC 1 cut(s) 605
Csp6I GTAC 5 cut(s) 354, 388, 932, 1000, 1261
CspCI CAANNNNNGTGG 2 cut(s) 751, 786
CviAII CATG 8 cut(s) 351, 758, 1091, 1126, 1315, 1360, 1381, 1408
CviQI GTAC 5 cut(s) 354, 388, 932, 1000, 1261
DdeI CTNAG 7 cut(s) 465, 744, 779, 883, 972, 1335, 1401
EaeI YGGCCR 3 cut(s) 22, 202, 754
EagI CGGCCG 1 cut(s) 22
Eam1104I CTCTTC 1 cut(s) 1251
EarI CTCTTC 1 cut(s) 1251
EciI GGCGGA 1 cut(s) 26
Ecl136II GAGCTC 1 cut(s) 16
EclXI CGGCCG 1 cut(s) 22
Eco130I CCWWGG 2 cut(s) 459, 762
Eco24I GRGCYC 1 cut(s) 18
Eco47III AGCGCT 1 cut(s) 784
Eco52I CGGCCG 1 cut(s) 22
Eco53kI GAGCTC 1 cut(s) 16
Eco57I CTGAAG 2 cut(s) 648, 720
EcoICRI GAGCTC 1 cut(s) 16
EcoRII CCWGG 2 cut(s) 265, 1057
EcoT14I CCWWGG 2 cut(s) 459, 762
EcoT38I GRGCYC 1 cut(s) 18
ErhI CCWWGG 2 cut(s) 459, 762
Esp3I CGTCTC 1 cut(s) 884
FaeI CATG 8 cut(s) 354, 761, 1094, 1129, 1318, 1363, 1384, 1411
FalI AAGNNNNNCTT 4 cut(s) 263, 295, 458, 490
FatI CATG 8 cut(s) 350, 757, 1090, 1125, 1314, 1359, 1380, 1407
FauI CCCGC 1 cut(s) 41
FauNDI CATATG 1 cut(s) 834
FbaI TGATCA 2 cut(s) 219, 436
Fnu4HI GCNGC 8 cut(s) 22, 198, 396, 594, 684, 792, 1055, 1357
FokI GGATG 2 cut(s) 268, 851
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 8 cut(s) 22, 198, 396, 594, 684, 792, 1055, 1357
FspBI CTAG 3 cut(s) 194, 303, 401
GlaI GCGC 3 cut(s) 37, 112, 784
GluI GCNGC 8 cut(s) 22, 198, 396, 594, 684, 792, 1055, 1357
GsuI CTGGAG 1 cut(s) 104
HaeII RGCGCY 1 cut(s) 786
HaeIII GGCC 6 cut(s) 24, 141, 204, 296, 425, 756
HapII CCGG 2 cut(s) 25, 426
HgaI GACGC 1 cut(s) 605
HhaI GCGC 3 cut(s) 38, 113, 785
Hin1II CATG 8 cut(s) 354, 761, 1094, 1129, 1318, 1363, 1384, 1411
Hin6I GCGC 3 cut(s) 36, 111, 783
HinP1I GCGC 3 cut(s) 36, 111, 783
HincII GTYRAC 2 cut(s) 181, 568
HindII GTYRAC 2 cut(s) 181, 568
HindIII AAGCTT 1 cut(s) 702
HinfI GANTC 6 cut(s) 494, 906, 1027, 1139, 1190, 1375
HpaI GTTAAC 1 cut(s) 181
HpaII CCGG 2 cut(s) 25, 426
HphI GGTGA 2 cut(s) 905, 1106
Hpy166II GTNNAC 3 cut(s) 181, 326, 568
Hpy188I TCNGA 4 cut(s) 127, 378, 499, 1338
Hpy188III TCNNGA 5 cut(s) 538, 903, 1048, 1294, 1381
Hpy8I GTNNAC 3 cut(s) 181, 326, 568
Hpy99I CGWCG 2 cut(s) 191, 323
HpyCH4III ACNGT 1 cut(s) 718
HpyCH4IV ACGT 2 cut(s) 858, 986
HpyCH4V TGCA 4 cut(s) 157, 686, 791, 1372
HpyF10VI GCNNNNNNNGC 5 cut(s) 461, 782, 791, 1339, 1362
HpyF3I CTNAG 7 cut(s) 465, 744, 779, 883, 972, 1335, 1401
HpySE526I ACGT 2 cut(s) 858, 986
Hsp92II CATG 8 cut(s) 354, 761, 1094, 1129, 1318, 1363, 1384, 1411
HspAI GCGC 3 cut(s) 36, 111, 783
KpnI GGTACC 1 cut(s) 935
Ksp22I TGATCA 2 cut(s) 219, 436
KspAI GTTAAC 1 cut(s) 181
LmnI GCTCC 3 cut(s) 13, 123, 728
Lsp1109I GCAGC 6 cut(s) 209, 407, 605, 670, 803, 1041
LweI GCATC 5 cut(s) 144, 246, 1041, 1068, 1329
MaeI CTAG 3 cut(s) 194, 303, 401
MaeII ACGT 2 cut(s) 858, 986
MaeIII GTNAC 2 cut(s) 58, 977
MbiI CCGCTC 1 cut(s) 1365
MboII GAAGA 7 cut(s) 184, 229, 391, 620, 1109, 1123, 1268
MflI RGATCY 5 cut(s) 262, 468, 643, 940, 1296
MhlI GDGCHC 3 cut(s) 18, 778, 1019
MlsI TGGCCA 1 cut(s) 204
MluCI AATT 3 cut(s) 510, 735, 1062
MluNI TGGCCA 1 cut(s) 204
MlyI GAGTC 3 cut(s) 900, 1199, 1384
MmeI TCCRAC 2 cut(s) 706, 1233
Mox20I TGGCCA 1 cut(s) 204
MroXI GAANNNNTTC 1 cut(s) 89
MscI TGGCCA 1 cut(s) 204
MseI TTAA 7 cut(s) 95, 168, 180, 708, 861, 1035, 1185
MslI CAYNNNNRTG 2 cut(s) 837, 1130
Msp20I TGGCCA 1 cut(s) 204
MspA1I CMGCKG 2 cut(s) 200, 442
MspI CCGG 2 cut(s) 25, 426
MspR9I CCNGG 2 cut(s) 267, 1059
Mva1269I GAATGC 1 cut(s) 457
MvaI CCWGG 2 cut(s) 267, 1059
MvnI CGCG 2 cut(s) 36, 111
MwoI GCNNNNNNNGC 5 cut(s) 461, 782, 791, 1339, 1362
NdeI CATATG 1 cut(s) 834
NlaIII CATG 8 cut(s) 354, 761, 1094, 1129, 1318, 1363, 1384, 1411
NlaIV GGNNCC 3 cut(s) 264, 639, 933
NmeAIII GCCGAG 1 cut(s) 1130
NmuCI GTSAC 1 cut(s) 58
NspI RCATGY 1 cut(s) 354
PagI TCATGA 1 cut(s) 1380
PciI ACATGT 1 cut(s) 350
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PctI GAATGC 1 cut(s) 457
PdmI GAANNNNTTC 1 cut(s) 89
PfeI GAWTC 3 cut(s) 494, 1027, 1139
PfoI TCCNGGA 1 cut(s) 265
PkrI GCNGC 8 cut(s) 23, 199, 397, 595, 685, 793, 1056, 1358
PleI GAGTC 3 cut(s) 900, 1198, 1383
PpsI GAGTC 3 cut(s) 900, 1198, 1383
PscI ACATGT 1 cut(s) 350
Psp124BI GAGCTC 1 cut(s) 18
Psp6I CCWGG 2 cut(s) 265, 1057
PspGI CCWGG 2 cut(s) 265, 1057
PspN4I GGNNCC 3 cut(s) 264, 639, 933
PspPI GGNCC 1 cut(s) 423
PsrI GAACNNNNNNTAC 2 cut(s) 992, 1024
PstI CTGCAG 1 cut(s) 1374
PsuI RGATCY 5 cut(s) 262, 468, 643, 940, 1296
PvuII CAGCTG 2 cut(s) 200, 442
RsaI GTAC 5 cut(s) 355, 389, 933, 1001, 1262
RsaNI GTAC 5 cut(s) 354, 388, 932, 1000, 1261
RseI CAYNNNNRTG 2 cut(s) 837, 1130
SacI GAGCTC 1 cut(s) 18
SaqAI TTAA 7 cut(s) 95, 168, 180, 708, 861, 1035, 1185
SatI GCNGC 8 cut(s) 22, 198, 396, 594, 684, 792, 1055, 1357
Sau96I GGNCC 1 cut(s) 423
SchI GAGTC 3 cut(s) 900, 1199, 1384
ScrFI CCNGG 2 cut(s) 267, 1059
SduI GDGCHC 3 cut(s) 18, 778, 1019
SfaNI GCATC 5 cut(s) 144, 246, 1041, 1068, 1329
SfcI CTRYAG 3 cut(s) 250, 944, 1370
SmiMI CAYNNNNRTG 2 cut(s) 837, 1130
Sse9I AATT 3 cut(s) 510, 735, 1062
SsiI CCGC 9 cut(s) 11, 21, 34, 410, 1024, 1331, 1356, 1365, 1428
SspI AATATT 1 cut(s) 166
SspMI CTAG 3 cut(s) 194, 303, 401
SstI GAGCTC 1 cut(s) 18
StyD4I CCNGG 2 cut(s) 265, 1057
StyI CCWWGG 2 cut(s) 459, 762
TaaI ACNGT 1 cut(s) 718
TaiI ACGT 2 cut(s) 861, 989
TaqI TCGA 4 cut(s) 69, 186, 225, 1049
TasI AATT 3 cut(s) 510, 735, 1062
TatI WGTACW 1 cut(s) 1260
TauI GCSGC 2 cut(s) 24, 1359
TfiI GAWTC 3 cut(s) 494, 1027, 1139
Tru1I TTAA 7 cut(s) 95, 168, 180, 708, 861, 1035, 1185
Tru9I TTAA 7 cut(s) 95, 168, 180, 708, 861, 1035, 1185
TscAI CASTG 2 cut(s) 580, 1019
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 6 cut(s) 197, 395, 593, 683, 791, 1054
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 7 cut(s) 65, 87, 805, 966, 1130, 1298, 1397
TspGWI ACGGA 2 cut(s) 650, 1323
TspRI CASTG 2 cut(s) 580, 1019
XceI RCATGY 1 cut(s) 354
XmnI GAANNNNTTC 1 cut(s) 89
XspI CTAG 3 cut(s) 194, 303, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.