Rh6BG491500

Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
69479040 .. 69480798
1759 bp
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UTR
Exon/CDS
Intron
Rh6BG491500.1

Sequence Viewer

Length: 1494 bp
ATGGTGTTAGCGGAATTAGGAGGGAGCATCTCCCGTGCTCTCCAGCAGATGAGCAATGCCACCGTGATCGACGAGAAGGTCCTGAACGAGTGCCTCAACGAGATCACACGCGCTCTTCTCCAATCCGATGTGCAATTCAAGCTCGTCCGCGATATGCAGACCAATATCAAGAAGATCGTCAATTTGGAGGATCTCGCTGCCGGTCACAACAAGCGTAGGATCATCCAGAATGCTATTTTTAATGAGCTCTGCAAAATGCTTGATCCAGGGAAACCCTCTTTCACTCCGAAGAAAGGAAAACCGAGTGTGGTCATGTTTGTTGGTTTGCAAGGGTCTGGAAAGACTACAACTTGCACAAAATATGCATATTATCATCAGAAGAAAGGTTGGAAACCTGCCCTGGTGTGCGCTGATACTTTCCGAGCTGGTGCATTTGATCAGTTGAAGCAGAATGCTACCAAGGCAAAGATTCCGTTTTATGGAAGCTATATGGAGTCGGACCCTGTGAAAATTGCGGTGGAAGGAGTGGAGACTTTTAAGAAGGAGAATTGCGATCTTATAATTGTTGATACCAGTGGGCGTCACAAACAGGAAGCTGCTCTTTTTGAAGAGATGCGTCAGGTGGCTGAAGCGACGAAACCAGATCTTGTTGTATTTGTTATGGATAGCAGTATTGGTCAGGCCGCGTTTGATCAAGCTCAAGCATTTAAGCAAAGTGCTGCAGTTGGAGCTGTTATTGTTACCAAAATGGATGGTCATGCAAAGGGAGGTGGTGCTCTTAGTGCTGTTGCAGCAACAAAGAGTCCTGTTATATTTATTGGAACAGGAGAGCATATGGATGAGTTTGAAGGGTTTGATGTTAAGGCCTTTGTCAGCCGTCTATTAGGCATGGGTGACTGGTCTGGATTTATGGACAAGATTCAGGAAGTTGTTCCTAAACTTGACAACCAGCCAGAGCTTCTGCAAAAGCTTTCAGAAGGGACCTTCACGCTGAGGATTATGTATGAGCAGTTTCAGAACTTGCTTCAAATGGGCCCACTTAGCCAGCTTACTTCAATGCTTCCAGGTGCTGAGTTAATGCCAAAAGGTAATGATAAGGAAAGCCAGGCCAAAATCAAGCGGTACATGACCATGATGGACTCGATGACAAATGAAGAGTTGGACAGCACAAATACAAAAATCATTACTGAGTCTCGTATAGTGCGAATAGCACGAGGTTCTGGTCGTCTGGTAAGAGAAGTGATGGAGATGTTTGAAGAGTACAAGCGCCTTGCTAAAATATGGAGCAAAATGAAAGGAATTAAGATTCCTAAGAAGGGTGGTATCAGTCCACTAAACCAAAACTTGAATGCACAGCAAATGAGCAAAGTCCTACCTCCCCAGATGTTGAAGCAGATTGGTGGCATGGGTGGCTTACAGAACTTGATGAAGCAAATGGGTTCAATGGGTTCAGCTAAAGAAATGATGGGAATGCTTGGAGGCGGGGACAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

497

Amino Acids

54.81

Weight (kDa)

9.16

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP54_N PF02881 6 - 83 3.4e-14 SRP54-type protein, helical bundle domain
SRP54 PF00448 101 - 296 3.9e-77 SRP54-type protein, GTPase domain
SRP_SPB PF02978 328 - 427 4.6e-27 Signal peptide binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009104)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 560
AasI GACNNNNNNGTC 1 cut(s) 77
Acc36I ACCTGC 1 cut(s) 403
AccII CGCG 3 cut(s) 111, 150, 686
AciI CCGC 6 cut(s) 11, 148, 515, 684, 1120, 1482
AclWI GGATC 3 cut(s) 198, 227, 257
AcuI CTGAAG 1 cut(s) 648
AcyI GRCGYC 1 cut(s) 580
AfaI GTAC 2 cut(s) 1124, 1262
AfiI CCNNNNNNNGG 3 cut(s) 293, 479, 1316
AjnI CCWGG 4 cut(s) 265, 399, 1063, 1104
Alw21I GWGCWC 3 cut(s) 40, 249, 778
Alw26I GTCTC 2 cut(s) 524, 1197
AlwI GGATC 3 cut(s) 198, 227, 257
AlwNI CAGNNNCTG 1 cut(s) 1070
AoxI GGCC 4 cut(s) 681, 864, 1033, 1107
ApaI GGGCCC 1 cut(s) 1037
ApeKI GCWGC 4 cut(s) 197, 596, 719, 791
Asp700I GAANNNNTTC 1 cut(s) 930
AspLEI GCGC 3 cut(s) 113, 410, 1269
AspS9I GGNCC 5 cut(s) 79, 499, 981, 1033, 1034
AsuHPI GGTGA 1 cut(s) 905
AvaII GGWCC 3 cut(s) 79, 499, 981
BaeGI GKGCMC 1 cut(s) 1037
BanII GRGCYC 2 cut(s) 249, 1037
BauI CACGAG 1 cut(s) 1212
Bbv12I GWGCWC 3 cut(s) 40, 249, 778
BbvCI CCTCAGC 1 cut(s) 992
BbvI GCAGC 4 cut(s) 184, 583, 706, 803
BccI CCATC 4 cut(s) 746, 1129, 1237, 1459
BceAI ACGGC 1 cut(s) 861
BciT130I CCWGG 4 cut(s) 267, 401, 1065, 1106
BclI TGATCA 2 cut(s) 436, 691
BcoDI GTCTC 2 cut(s) 524, 1197
BfmI CTRYAG 1 cut(s) 720
BfoI RGCGCY 1 cut(s) 1270
BfuAI ACCTGC 1 cut(s) 403
BglII AGATCT 1 cut(s) 643
BisI GCNGC 5 cut(s) 198, 597, 684, 720, 792
BlsI GCNGC 5 cut(s) 199, 598, 685, 721, 793
Bme1390I CCNGG 4 cut(s) 267, 401, 1065, 1106
Bme18I GGWCC 3 cut(s) 79, 499, 981
BmgT120I GGNCC 5 cut(s) 79, 499, 981, 1033, 1034
BmiI GGNNCC 3 cut(s) 501, 982, 1035
BmrFI CCNGG 4 cut(s) 267, 401, 1065, 1106
BmsI GCATC 2 cut(s) 36, 603
BpmI CTGGAG 1 cut(s) 26
Bpu10I CCTNAGC 1 cut(s) 992
BpuEI CTTGAG 1 cut(s) 684
BsaHI GRCGYC 1 cut(s) 580
BsaJI CCNNGG 3 cut(s) 266, 399, 459
Bsc4I CCNNNNNNNGG 3 cut(s) 293, 479, 1316
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 2 cut(s) 573, 902
Bse3DI GCAATG 1 cut(s) 61
BseBI CCWGG 4 cut(s) 267, 401, 1065, 1106
BseDI CCNNGG 3 cut(s) 266, 399, 459
BseGI GGATG 3 cut(s) 222, 757, 844
BseLI CCNNNNNNNGG 3 cut(s) 293, 479, 1316
BseMI GCAATG 1 cut(s) 61
BseMII CTCAG 3 cut(s) 983, 1062, 1179
BseNI ACTGG 2 cut(s) 573, 902
BseSI GKGCMC 1 cut(s) 1037
BseXI GCAGC 4 cut(s) 184, 583, 706, 803
Bsh1236I CGCG 3 cut(s) 111, 150, 686
BshFI GGCC 4 cut(s) 683, 866, 1035, 1109
BsiHKAI GWGCWC 3 cut(s) 40, 249, 778
BsiSI CCGG 1 cut(s) 201
BslFI GGGAC 1 cut(s) 994
BslI CCNNNNNNNGG 3 cut(s) 293, 479, 1316
BsmAI GTCTC 2 cut(s) 524, 1197
BsmFI GGGAC 1 cut(s) 994
BsmI GAATGC 4 cut(s) 235, 457, 1354, 1476
BsnI GGCC 4 cut(s) 683, 866, 1035, 1109
Bsp120I GGGCCC 1 cut(s) 1033
Bsp1286I GDGCHC 4 cut(s) 40, 249, 778, 1037
BspACI CCGC 6 cut(s) 11, 148, 515, 684, 1120, 1482
BspANI GGCC 4 cut(s) 683, 866, 1035, 1109
BspCNI CTCAG 3 cut(s) 984, 1063, 1180
BspFNI CGCG 3 cut(s) 111, 150, 686
BspLI GGNNCC 3 cut(s) 501, 982, 1035
BspMAI CTGCAG 1 cut(s) 724
BspMI ACCTGC 1 cut(s) 403
BspPI GGATC 3 cut(s) 198, 227, 257
BspQI GCTCTTC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 61
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 2 cut(s) 573, 902
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 3 cut(s) 266, 399, 459
BssNI GRCGYC 1 cut(s) 580
BssSI CACGAG 1 cut(s) 1212
BssT1I CCWWGG 1 cut(s) 459
Bst2BI CACGAG 1 cut(s) 1212
Bst2UI CCWGG 4 cut(s) 267, 401, 1065, 1106
Bst4CI ACNGT 1 cut(s) 64
Bst6I CTCTTC 4 cut(s) 120, 603, 1149, 1251
BstACI GRCGYC 1 cut(s) 580
BstC8I GCNNGC 1 cut(s) 1046
BstDEI CTNAG 6 cut(s) 779, 992, 1040, 1071, 1188, 1311
BstF5I GGATG 3 cut(s) 222, 757, 844
BstFNI CGCG 3 cut(s) 111, 150, 686
BstH2I RGCGCY 1 cut(s) 1270
BstHHI GCGC 3 cut(s) 113, 410, 1269
BstMAI GTCTC 2 cut(s) 524, 1197
BstMWI GCNNNNNNNGC 7 cut(s) 139, 461, 728, 782, 791, 1041, 1410
BstNI CCWGG 4 cut(s) 267, 401, 1065, 1106
BstSCI CCNGG 4 cut(s) 265, 399, 1063, 1104
BstSFI CTRYAG 1 cut(s) 720
BstSLI GKGCMC 1 cut(s) 1037
BstUI CGCG 3 cut(s) 111, 150, 686
BstV1I GCAGC 4 cut(s) 184, 583, 706, 803
BstX2I RGATCY 2 cut(s) 190, 643
BstYI RGATCY 2 cut(s) 190, 643
BsuRI GGCC 4 cut(s) 683, 866, 1035, 1109
BtsCI GGATG 3 cut(s) 222, 757, 844
BtsIMutI CAGTG 1 cut(s) 580
BveI ACCTGC 1 cut(s) 403
Cac8I GCNNGC 1 cut(s) 1046
CaiI CAGNNNCTG 1 cut(s) 1070
CfoI GCGC 3 cut(s) 113, 410, 1269
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 5 cut(s) 79, 499, 981, 1033, 1034
CseI GACGC 2 cut(s) 569, 605
Csp6I GTAC 2 cut(s) 1123, 1261
CviAII CATG 6 cut(s) 313, 758, 889, 1126, 1132, 1405
CviQI GTAC 2 cut(s) 1123, 1261
DdeI CTNAG 6 cut(s) 779, 992, 1040, 1071, 1188, 1311
DrdI GACNNNNNNGTC 1 cut(s) 77
DseDI GACNNNNNNGTC 1 cut(s) 77
Eam1104I CTCTTC 4 cut(s) 120, 603, 1149, 1251
EarI CTCTTC 4 cut(s) 120, 603, 1149, 1251
Ecl136II GAGCTC 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 459
Eco147I AGGCCT 1 cut(s) 866
Eco24I GRGCYC 2 cut(s) 249, 1037
Eco47I GGWCC 3 cut(s) 79, 499, 981
Eco53kI GAGCTC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 648
EcoICRI GAGCTC 1 cut(s) 247
EcoO109I RGGNCCY 2 cut(s) 79, 981
EcoRII CCWGG 4 cut(s) 265, 399, 1063, 1104
EcoT14I CCWWGG 1 cut(s) 459
EcoT22I ATGCAT 1 cut(s) 367
EcoT38I GRGCYC 2 cut(s) 249, 1037
ErhI CCWWGG 1 cut(s) 459
FaeI CATG 6 cut(s) 316, 761, 892, 1129, 1135, 1408
FalI AAGNNNNNCTT 2 cut(s) 585, 617
FaqI GGGAC 1 cut(s) 994
FatI CATG 6 cut(s) 312, 757, 888, 1125, 1131, 1404
FauI CCCGC 1 cut(s) 1475
FauNDI CATATG 1 cut(s) 834
FbaI TGATCA 2 cut(s) 436, 691
Fnu4HI GCNGC 5 cut(s) 198, 597, 684, 720, 792
FokI GGATG 3 cut(s) 209, 764, 851
FriOI GRGCYC 2 cut(s) 249, 1037
Fsp4HI GCNGC 5 cut(s) 198, 597, 684, 720, 792
GlaI GCGC 3 cut(s) 112, 409, 1268
GluI GCNGC 5 cut(s) 198, 597, 684, 720, 792
GsuI CTGGAG 1 cut(s) 26
HaeII RGCGCY 1 cut(s) 1270
HaeIII GGCC 4 cut(s) 683, 866, 1035, 1109
HapII CCGG 1 cut(s) 201
HgaI GACGC 2 cut(s) 569, 605
HhaI GCGC 3 cut(s) 113, 410, 1269
Hin1I GRCGYC 1 cut(s) 580
Hin1II CATG 6 cut(s) 316, 761, 892, 1129, 1135, 1408
Hin6I GCGC 3 cut(s) 111, 408, 1267
HinP1I GCGC 3 cut(s) 111, 408, 1267
HindIII AAGCTT 1 cut(s) 968
HinfI GANTC 7 cut(s) 469, 494, 802, 919, 1139, 1190, 1306
HpaII CCGG 1 cut(s) 201
HphI GGTGA 1 cut(s) 905
Hpy166II GTNNAC 1 cut(s) 1331
Hpy188I TCNGA 7 cut(s) 127, 288, 378, 422, 499, 976, 1017
Hpy188III TCNNGA 6 cut(s) 82, 169, 226, 336, 903, 923
Hpy8I GTNNAC 1 cut(s) 1331
Hpy99I CGWCG 2 cut(s) 74, 637
HpyAV CCTTC 7 cut(s) 70, 515, 535, 842, 971, 994, 1309
HpyCH4III ACNGT 1 cut(s) 64
HpyF10VI GCNNNNNNNGC 7 cut(s) 139, 461, 728, 782, 791, 1041, 1410
HpyF3I CTNAG 6 cut(s) 779, 992, 1040, 1071, 1188, 1311
Hsp92I GRCGYC 1 cut(s) 580
Hsp92II CATG 6 cut(s) 316, 761, 892, 1129, 1135, 1408
HspAI GCGC 3 cut(s) 111, 408, 1267
Ksp22I TGATCA 2 cut(s) 436, 691
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 3 cut(s) 24, 728, 1284
Lsp1109I GCAGC 4 cut(s) 184, 583, 706, 803
LweI GCATC 2 cut(s) 36, 603
MaeIII GTNAC 4 cut(s) 203, 581, 739, 893
MboII GAAGA 7 cut(s) 107, 184, 301, 391, 620, 1166, 1268
MflI RGATCY 2 cut(s) 190, 643
MhlI GDGCHC 4 cut(s) 40, 249, 778, 1037
MluCI AATT 7 cut(s) 14, 134, 181, 510, 547, 561, 1299
MlyI GAGTC 4 cut(s) 503, 811, 1133, 1199
MmeI TCCRAC 4 cut(s) 368, 477, 706, 1140
MnlI CCTC 9 cut(s) 14, 104, 181, 286, 761, 987, 1208, 1386, 1472
Mph1103I ATGCAT 1 cut(s) 367
MroXI GAANNNNTTC 1 cut(s) 930
MseI TTAA 6 cut(s) 240, 537, 708, 861, 1076, 1302
MslI CAYNNNNRTG 2 cut(s) 837, 1130
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 4 cut(s) 267, 401, 1065, 1106
Mva1269I GAATGC 4 cut(s) 235, 457, 1354, 1476
MvaI CCWGG 4 cut(s) 267, 401, 1065, 1106
MvnI CGCG 3 cut(s) 111, 150, 686
MwoI GCNNNNNNNGC 7 cut(s) 139, 461, 728, 782, 791, 1041, 1410
NdeI CATATG 1 cut(s) 834
NlaIII CATG 6 cut(s) 316, 761, 892, 1129, 1135, 1408
NlaIV GGNNCC 3 cut(s) 501, 982, 1035
NmuCI GTSAC 3 cut(s) 203, 581, 893
NsiI ATGCAT 1 cut(s) 367
PceI AGGCCT 1 cut(s) 866
PciSI GCTCTTC 1 cut(s) 120
PcsI WCGNNNNNNNCGW 1 cut(s) 1201
PctI GAATGC 4 cut(s) 235, 457, 1354, 1476
PdmI GAANNNNTTC 1 cut(s) 930
PfeI GAWTC 3 cut(s) 469, 919, 1306
PkrI GCNGC 5 cut(s) 199, 598, 685, 721, 793
PleI GAGTC 4 cut(s) 502, 810, 1133, 1198
PpsI GAGTC 4 cut(s) 502, 810, 1133, 1198
PpuMI RGGWCCY 2 cut(s) 79, 981
PsiI TTATAA 1 cut(s) 560
Psp124BI GAGCTC 1 cut(s) 249
Psp5II RGGWCCY 2 cut(s) 79, 981
Psp6I CCWGG 4 cut(s) 265, 399, 1063, 1104
PspGI CCWGG 4 cut(s) 265, 399, 1063, 1104
PspN4I GGNNCC 3 cut(s) 501, 982, 1035
PspOMI GGGCCC 1 cut(s) 1033
PspPI GGNCC 5 cut(s) 79, 499, 981, 1033, 1034
PspPPI RGGWCCY 2 cut(s) 79, 981
PstI CTGCAG 1 cut(s) 724
PstNI CAGNNNCTG 1 cut(s) 1070
PsuI RGATCY 2 cut(s) 190, 643
RsaI GTAC 2 cut(s) 1124, 1262
RsaNI GTAC 2 cut(s) 1123, 1261
RseI CAYNNNNRTG 2 cut(s) 837, 1130
SacI GAGCTC 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 6 cut(s) 240, 537, 708, 861, 1076, 1302
SatI GCNGC 5 cut(s) 198, 597, 684, 720, 792
Sau96I GGNCC 5 cut(s) 79, 499, 981, 1033, 1034
SchI GAGTC 4 cut(s) 503, 811, 1133, 1199
ScrFI CCNGG 4 cut(s) 267, 401, 1065, 1106
SduI GDGCHC 4 cut(s) 40, 249, 778, 1037
SfaNI GCATC 2 cut(s) 36, 603
SfcI CTRYAG 1 cut(s) 720
SinI GGWCC 3 cut(s) 79, 499, 981
SmiMI CAYNNNNRTG 2 cut(s) 837, 1130
SmlI CTYRAG 1 cut(s) 699
SmoI CTYRAG 1 cut(s) 699
Sse9I AATT 7 cut(s) 14, 134, 181, 510, 547, 561, 1299
SseBI AGGCCT 1 cut(s) 866
SsiI CCGC 6 cut(s) 11, 148, 515, 684, 1120, 1482
SstI GAGCTC 1 cut(s) 249
StuI AGGCCT 1 cut(s) 866
StyD4I CCNGG 4 cut(s) 265, 399, 1063, 1104
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 1 cut(s) 64
TaqI TCGA 2 cut(s) 69, 1142
TasI AATT 7 cut(s) 14, 134, 181, 510, 547, 561, 1299
TatI WGTACW 1 cut(s) 1260
TauI GCSGC 1 cut(s) 686
TfiI GAWTC 3 cut(s) 469, 919, 1306
Tru1I TTAA 6 cut(s) 240, 537, 708, 861, 1076, 1302
Tru9I TTAA 6 cut(s) 240, 537, 708, 861, 1076, 1302
TscAI CASTG 1 cut(s) 580
TseFI GTSAC 3 cut(s) 203, 581, 893
TseI GCWGC 4 cut(s) 197, 596, 719, 791
Tsp45I GTSAC 3 cut(s) 203, 581, 893
TspDTI ATGAA 3 cut(s) 1167, 1307, 1442
TspGWI ACGGA 1 cut(s) 462
TspRI CASTG 1 cut(s) 580
VpaK11BI GGWCC 3 cut(s) 79, 499, 981
XmnI GAANNNNTTC 1 cut(s) 930
Zsp2I ATGCAT 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.