FvH4_2g33430

Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
25080326 .. 25082600
2275 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g33430.t1

Sequence Viewer

Length: 1503 bp
ATGGTGTTGGCGGAGCTAGGAGGGAGCATCTCCCGTGCTCTCCAGCAGATGAGCAATGCGACCGTGATCGACGAGAAGGTCCTCAACGAGTGCCTCAATGAGATCACACGCGCTCTTCTCCAATCCGATGTGCAATTCAAGCTCGTCCGCGACATGCAGACCAATATCAAGAAGATCGTCAATTTGGAAGATCTCGCTGCTGGTCACAACAAGCGTCGCATCATCCAGAACGCCATTTTTAATGAGCTCTGCAAAATGCTTGATCCTGGGAAGCCATCCTTCACTCCCAAGAAGGGGAAGCCCAGCGTCGTTATGTTTGTTGGTTTGCAAGGGTCTGGAAAGACTACGACTTGTACGAAGTATGCTTATTATCATCAGAAGAAGGGCTGGAAGCCTGCCCTGGTGTGTGCGGATACTTTCCGAGCTGGTGCATTTGATCAGTTGAAGCAGAATGCTACCAAGGCGAAGATTCCGTTCTATGGAAGCTATATGGAGTCTGATCCTGTGAAGATTGCGGTGGAAGGAGTGGAGACTTTTAAGAAGGAGAATTGTGATCTTATAATTGTTGATACCAGTGGGCGTCACAAGCAGGAGGCTGCTCTTTTTGAGGAGATGCGGCAGGTGGCTGAAGCGACGAAACCGGATCTTGTTATATTTGTTATGGACAGCAGTATTGGTCAGGCTGCGTTTGATCAAGCTCAAGCGTTTAAGCAGAGTGCTGCGGTTGGTGCTGTTATTGTTACCAAAATGGATGGTCATGCAAAGGGAGGTGGTGCTCTTAGTGCTGTTGCGGCGACAAAGAGTCCTGTTATATTTATCGGAACAGGAGAGCATATGGATGAGTTTGAAGTTTTTGATGTTAAACCGTTTGTCAGCCGTCTCTTAGGCATGGGTGACTGGTCTGGGTTTATGGACAAGATTCAGGAAGTTGTTCCTAAACTGGACAACCAGCCAGAGCTTCTGCAAAAGCTTTCGGAAGGGACCTTCACGCTGAGGATTATGTATGAGCAGTTTCAGAATCTGCTTCAAATGGGTCCACTTAGCCAGCTTACTTCAATGCTTCCAGGTGCTGAGTTAATGCCTAAAGGTAATGATAAGGAAAGCCAGGCCAAAATCAAGCGGTACATGACCATGATGGACTCGATGACAAATGAAGAGTTGGACAGCACAAATACAAAAATCATTACCGAGTCTCGGATAGTGCGAATAGCACGAGGTTCTGGTCGTCTAGTGAGAGAAGTGATGGAAATGTTTGAAGAGTACAAGCGCCTTGCGAAAATATGGAGCAAAATGAAAGGACTTAAGATTCCCAAGAAGGGACCAATGAGTTCACTAAACCAAAACATGAATGCACAGCAAATGAGCAAAGTCCTACCTCCTCAGATGTTGAAGCAGATTGGTGGCATGGGTGGCTTACAGAACTTGATGAAGCAAATGGGTGGTATGGGTGGTTTGGGTTCTGCTAAAGATATGATGGGAATGCTCGGAGGCGGGGACAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

501

Amino Acids

55.15

Weight (kDa)

9.16

Isoelectric Point (pI)

42.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP54_N PF02881 6 - 83 3.4e-14 SRP54-type protein, helical bundle domain
SRP54 PF00448 101 - 296 8.9e-78 SRP54-type protein, GTPase domain
SRP_SPB PF02978 328 - 427 4.7e-27 Signal peptide binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009104)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 560
AarI CACCTGC 1 cut(s) 610
AasI GACNNNNNNGTC 1 cut(s) 77
Acc36I ACCTGC 1 cut(s) 610
AccII CGCG 2 cut(s) 111, 150
AciI CCGC 9 cut(s) 11, 148, 410, 515, 616, 722, 791, 1120, 1491
AclWI GGATC 3 cut(s) 257, 494, 651
AcuI CTGAAG 1 cut(s) 648
AcyI GRCGYC 1 cut(s) 580
AfaI GTAC 3 cut(s) 355, 1124, 1262
AfiI CCNNNNNNNGG 5 cut(s) 293, 294, 479, 1194, 1316
AflII CTTAAG 1 cut(s) 1301
AgsI TTSAA 7 cut(s) 139, 445, 848, 1028, 1056, 1256, 1390
AhdI GACNNNNNGTC 1 cut(s) 801
AjnI CCWGG 4 cut(s) 265, 399, 1063, 1104
AluBI AGCT 9 cut(s) 16, 142, 247, 425, 486, 698, 958, 970, 1048
AluI AGCT 9 cut(s) 16, 142, 247, 425, 486, 698, 958, 970, 1048
Alw21I GWGCWC 3 cut(s) 40, 249, 778
Alw26I GTCTC 3 cut(s) 524, 884, 1197
AlwI GGATC 3 cut(s) 257, 494, 651
AlwNI CAGNNNCTG 2 cut(s) 1021, 1070
AoxI GGCC 1 cut(s) 1107
ApeKI GCWGC 4 cut(s) 197, 596, 683, 719
Asp700I GAANNNNTTC 1 cut(s) 930
AspLEI GCGC 2 cut(s) 113, 1269
AspS9I GGNCC 4 cut(s) 79, 981, 1034, 1319
AsuHPI GGTGA 1 cut(s) 905
AvaII GGWCC 4 cut(s) 79, 981, 1034, 1319
BanII GRGCYC 1 cut(s) 249
BauI CACGAG 1 cut(s) 1212
Bbv12I GWGCWC 3 cut(s) 40, 249, 778
BbvCI CCTCAGC 1 cut(s) 992
BbvI GCAGC 4 cut(s) 184, 583, 670, 706
BccI CCATC 5 cut(s) 283, 746, 1129, 1237, 1468
BceAI ACGGC 1 cut(s) 861
BciT130I CCWGG 4 cut(s) 267, 401, 1065, 1106
BciVI GTATCC 1 cut(s) 406
BclI TGATCA 2 cut(s) 436, 691
BcoDI GTCTC 3 cut(s) 524, 884, 1197
BfaI CTAG 2 cut(s) 17, 1229
BfoI RGCGCY 1 cut(s) 1270
BfrI CTTAAG 1 cut(s) 1301
BfuAI ACCTGC 1 cut(s) 610
BfuI GTATCC 1 cut(s) 406
BglII AGATCT 1 cut(s) 190
BisI GCNGC 6 cut(s) 198, 597, 617, 684, 720, 792
BlsI GCNGC 6 cut(s) 199, 598, 618, 685, 721, 793
Bme1390I CCNGG 4 cut(s) 267, 401, 1065, 1106
Bme18I GGWCC 4 cut(s) 79, 981, 1034, 1319
BmeRI GACNNNNNGTC 1 cut(s) 801
BmgT120I GGNCC 4 cut(s) 79, 981, 1034, 1319
BmiI GGNNCC 3 cut(s) 982, 1035, 1320
BmrFI CCNGG 4 cut(s) 267, 401, 1065, 1106
BmsI GCATC 3 cut(s) 36, 228, 603
BpmI CTGGAG 1 cut(s) 26
Bpu10I CCTNAGC 1 cut(s) 992
BpuEI CTTGAG 1 cut(s) 684
BsaHI GRCGYC 1 cut(s) 580
BsaJI CCNNGG 3 cut(s) 266, 399, 459
BsaWI WCCGGW 1 cut(s) 640
Bsc4I CCNNNNNNNGG 5 cut(s) 293, 294, 479, 1194, 1316
Bse1I ACTGG 3 cut(s) 573, 902, 945
Bse3DI GCAATG 1 cut(s) 61
BseBI CCWGG 4 cut(s) 267, 401, 1065, 1106
BseDI CCNNGG 3 cut(s) 266, 399, 459
BseGI GGATG 4 cut(s) 222, 275, 757, 844
BseLI CCNNNNNNNGG 5 cut(s) 293, 294, 479, 1194, 1316
BseMI GCAATG 1 cut(s) 61
BseMII CTCAG 3 cut(s) 983, 1062, 1394
BseNI ACTGG 3 cut(s) 573, 902, 945
BseRI GAGGAG 2 cut(s) 623, 1368
BseXI GCAGC 4 cut(s) 184, 583, 670, 706
BseYI CCCAGC 1 cut(s) 302
Bsh1236I CGCG 2 cut(s) 111, 150
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 1 cut(s) 1109
BsiEI CGRYCG 1 cut(s) 63
BsiHKAI GWGCWC 3 cut(s) 40, 249, 778
BsiSI CCGG 1 cut(s) 641
BslFI GGGAC 2 cut(s) 994, 1332
BslI CCNNNNNNNGG 5 cut(s) 293, 294, 479, 1194, 1316
BsmAI GTCTC 3 cut(s) 524, 884, 1197
BsmBI CGTCTC 1 cut(s) 884
BsmFI GGGAC 2 cut(s) 994, 1332
BsmI GAATGC 3 cut(s) 457, 1354, 1485
BsnI GGCC 1 cut(s) 1109
Bsp1286I GDGCHC 3 cut(s) 40, 249, 778
BspACI CCGC 9 cut(s) 11, 148, 410, 515, 616, 722, 791, 1120, 1491
BspANI GGCC 1 cut(s) 1109
BspCNI CTCAG 3 cut(s) 984, 1063, 1393
BspFNI CGCG 2 cut(s) 111, 150
BspLI GGNNCC 3 cut(s) 982, 1035, 1320
BspMI ACCTGC 1 cut(s) 610
BspPI GGATC 3 cut(s) 257, 494, 651
BspQI GCTCTTC 1 cut(s) 120
BspTI CTTAAG 1 cut(s) 1301
BsrDI GCAATG 1 cut(s) 61
BsrI ACTGG 3 cut(s) 573, 902, 945
BssECI CCNNGG 3 cut(s) 266, 399, 459
BssNI GRCGYC 1 cut(s) 580
BssSI CACGAG 1 cut(s) 1212
BssT1I CCWWGG 1 cut(s) 459
Bst2BI CACGAG 1 cut(s) 1212
Bst2UI CCWGG 4 cut(s) 267, 401, 1065, 1106
Bst4CI ACNGT 2 cut(s) 64, 867
Bst6I CTCTTC 3 cut(s) 120, 1149, 1251
BstACI GRCGYC 1 cut(s) 580
BstAFI CTTAAG 1 cut(s) 1301
BstC8I GCNNGC 2 cut(s) 396, 1046
BstDEI CTNAG 6 cut(s) 779, 883, 992, 1040, 1071, 1380
BstF5I GGATG 4 cut(s) 222, 275, 757, 844
BstFNI CGCG 2 cut(s) 111, 150
BstH2I RGCGCY 1 cut(s) 1270
BstHHI GCGC 2 cut(s) 113, 1269
BstMAI GTCTC 3 cut(s) 524, 884, 1197
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 7 cut(s) 139, 461, 586, 728, 782, 791, 1410
BstNI CCWGG 4 cut(s) 267, 401, 1065, 1106
BstNSI RCATGY 1 cut(s) 157
BstSCI CCNGG 4 cut(s) 265, 399, 1063, 1104
BstUI CGCG 2 cut(s) 111, 150
BstV1I GCAGC 4 cut(s) 184, 583, 670, 706
BstX2I RGATCY 2 cut(s) 190, 643
BstYI RGATCY 2 cut(s) 190, 643
BsuI GTATCC 1 cut(s) 406
BsuRI GGCC 1 cut(s) 1109
BtsCI GGATG 4 cut(s) 222, 275, 757, 844
BtsIMutI CAGTG 1 cut(s) 580
BveI ACCTGC 1 cut(s) 610
Cac8I GCNNGC 2 cut(s) 396, 1046
CaiI CAGNNNCTG 2 cut(s) 1021, 1070
CfoI GCGC 2 cut(s) 113, 1269
Cfr13I GGNCC 4 cut(s) 79, 981, 1034, 1319
CseI GACGC 3 cut(s) 203, 295, 569
Csp6I GTAC 3 cut(s) 354, 1123, 1261
CviAII CATG 7 cut(s) 154, 758, 889, 1126, 1132, 1345, 1405
CviQI GTAC 3 cut(s) 354, 1123, 1261
DdeI CTNAG 6 cut(s) 779, 883, 992, 1040, 1071, 1380
DrdI GACNNNNNNGTC 1 cut(s) 77
DriI GACNNNNNGTC 1 cut(s) 801
DseDI GACNNNNNNGTC 1 cut(s) 77
Eam1104I CTCTTC 3 cut(s) 120, 1149, 1251
Eam1105I GACNNNNNGTC 1 cut(s) 801
EarI CTCTTC 3 cut(s) 120, 1149, 1251
EciI GGCGGA 1 cut(s) 26
Ecl136II GAGCTC 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 459
Eco24I GRGCYC 1 cut(s) 249
Eco47I GGWCC 4 cut(s) 79, 981, 1034, 1319
Eco53kI GAGCTC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 648
EcoICRI GAGCTC 1 cut(s) 247
EcoO109I RGGNCCY 2 cut(s) 79, 981
EcoRII CCWGG 4 cut(s) 265, 399, 1063, 1104
EcoT14I CCWWGG 1 cut(s) 459
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 459
Esp3I CGTCTC 1 cut(s) 884
FaeI CATG 7 cut(s) 157, 761, 892, 1129, 1135, 1348, 1408
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FaqI GGGAC 2 cut(s) 994, 1332
FatI CATG 7 cut(s) 153, 757, 888, 1125, 1131, 1344, 1404
FauI CCCGC 1 cut(s) 1484
FauNDI CATATG 1 cut(s) 834
FbaI TGATCA 2 cut(s) 436, 691
Fnu4HI GCNGC 6 cut(s) 198, 597, 617, 684, 720, 792
FokI GGATG 4 cut(s) 209, 262, 764, 851
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 6 cut(s) 198, 597, 617, 684, 720, 792
FspBI CTAG 2 cut(s) 17, 1229
GlaI GCGC 2 cut(s) 112, 1268
GluI GCNGC 6 cut(s) 198, 597, 617, 684, 720, 792
GsaI CCCAGC 1 cut(s) 306
GsuI CTGGAG 1 cut(s) 26
HaeII RGCGCY 1 cut(s) 1270
HaeIII GGCC 1 cut(s) 1109
HapII CCGG 1 cut(s) 641
HgaI GACGC 3 cut(s) 203, 295, 569
HhaI GCGC 2 cut(s) 113, 1269
Hin1I GRCGYC 1 cut(s) 580
Hin1II CATG 7 cut(s) 157, 761, 892, 1129, 1135, 1348, 1408
Hin6I GCGC 2 cut(s) 111, 1267
HinP1I GCGC 2 cut(s) 111, 1267
HindIII AAGCTT 1 cut(s) 968
HinfI GANTC 8 cut(s) 469, 494, 802, 919, 1018, 1139, 1190, 1306
HpaII CCGG 1 cut(s) 641
HphI GGTGA 1 cut(s) 905
Hpy166II GTNNAC 2 cut(s) 1037, 1331
Hpy188III TCNNGA 4 cut(s) 169, 226, 336, 923
Hpy8I GTNNAC 2 cut(s) 1037, 1331
Hpy99I CGWCG 4 cut(s) 74, 219, 311, 637
HpyAV CCTTC 9 cut(s) 70, 286, 289, 376, 515, 535, 971, 994, 1309
HpyCH4III ACNGT 2 cut(s) 64, 867
HpyCH4V TGCA 8 cut(s) 133, 157, 252, 328, 431, 761, 964, 1352
HpyF10VI GCNNNNNNNGC 7 cut(s) 139, 461, 586, 728, 782, 791, 1410
HpyF3I CTNAG 6 cut(s) 779, 883, 992, 1040, 1071, 1380
Hsp92I GRCGYC 1 cut(s) 580
Hsp92II CATG 7 cut(s) 157, 761, 892, 1129, 1135, 1348, 1408
HspAI GCGC 2 cut(s) 111, 1267
Ksp22I TGATCA 2 cut(s) 436, 691
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 3 cut(s) 13, 24, 1284
Lsp1109I GCAGC 4 cut(s) 184, 583, 670, 706
LweI GCATC 3 cut(s) 36, 228, 603
MaeI CTAG 2 cut(s) 17, 1229
MaeIII GTNAC 4 cut(s) 203, 581, 739, 893
MboII GAAGA 8 cut(s) 107, 184, 200, 391, 478, 520, 1166, 1268
MflI RGATCY 2 cut(s) 190, 643
MhlI GDGCHC 3 cut(s) 40, 249, 778
MluCI AATT 4 cut(s) 134, 181, 547, 561
MlyI GAGTC 4 cut(s) 503, 811, 1133, 1199
MmeI TCCRAC 1 cut(s) 1140
MroXI GAANNNNTTC 1 cut(s) 930
MseI TTAA 6 cut(s) 240, 537, 708, 861, 1076, 1302
MslI CAYNNNNRTG 2 cut(s) 837, 1130
MspCI CTTAAG 1 cut(s) 1301
MspI CCGG 1 cut(s) 641
MspR9I CCNGG 4 cut(s) 267, 401, 1065, 1106
Mva1269I GAATGC 3 cut(s) 457, 1354, 1485
MvaI CCWGG 4 cut(s) 267, 401, 1065, 1106
MvnI CGCG 2 cut(s) 111, 150
MwoI GCNNNNNNNGC 7 cut(s) 139, 461, 586, 728, 782, 791, 1410
NdeI CATATG 1 cut(s) 834
NlaIII CATG 7 cut(s) 157, 761, 892, 1129, 1135, 1348, 1408
NlaIV GGNNCC 3 cut(s) 982, 1035, 1320
NmuCI GTSAC 3 cut(s) 203, 581, 893
NspI RCATGY 1 cut(s) 157
PaqCI CACCTGC 1 cut(s) 610
PciSI GCTCTTC 1 cut(s) 120
PcsI WCGNNNNNNNCGW 2 cut(s) 353, 1201
PctI GAATGC 3 cut(s) 457, 1354, 1485
PdmI GAANNNNTTC 1 cut(s) 930
PfeI GAWTC 4 cut(s) 469, 919, 1018, 1306
PkrI GCNGC 6 cut(s) 199, 598, 618, 685, 721, 793
PleI GAGTC 4 cut(s) 502, 810, 1133, 1198
PpsI GAGTC 4 cut(s) 502, 810, 1133, 1198
PpuMI RGGWCCY 2 cut(s) 79, 981
PsiI TTATAA 1 cut(s) 560
Psp124BI GAGCTC 1 cut(s) 249
Psp5II RGGWCCY 2 cut(s) 79, 981
Psp6I CCWGG 4 cut(s) 265, 399, 1063, 1104
PspFI CCCAGC 1 cut(s) 302
PspGI CCWGG 4 cut(s) 265, 399, 1063, 1104
PspN4I GGNNCC 3 cut(s) 982, 1035, 1320
PspPI GGNCC 4 cut(s) 79, 981, 1034, 1319
PspPPI RGGWCCY 2 cut(s) 79, 981
PstNI CAGNNNCTG 2 cut(s) 1021, 1070
PsuI RGATCY 2 cut(s) 190, 643
RsaI GTAC 3 cut(s) 355, 1124, 1262
RsaNI GTAC 3 cut(s) 354, 1123, 1261
RseI CAYNNNNRTG 2 cut(s) 837, 1130
SacI GAGCTC 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 6 cut(s) 240, 537, 708, 861, 1076, 1302
SatI GCNGC 6 cut(s) 198, 597, 617, 684, 720, 792
Sau96I GGNCC 4 cut(s) 79, 981, 1034, 1319
SchI GAGTC 4 cut(s) 503, 811, 1133, 1199
ScrFI CCNGG 4 cut(s) 267, 401, 1065, 1106
SduI GDGCHC 3 cut(s) 40, 249, 778
SfaNI GCATC 3 cut(s) 36, 228, 603
SinI GGWCC 4 cut(s) 79, 981, 1034, 1319
SmiMI CAYNNNNRTG 2 cut(s) 837, 1130
SmlI CTYRAG 2 cut(s) 699, 1301
SmoI CTYRAG 2 cut(s) 699, 1301
Sse9I AATT 4 cut(s) 134, 181, 547, 561
SsiI CCGC 9 cut(s) 11, 148, 410, 515, 616, 722, 791, 1120, 1491
SspMI CTAG 2 cut(s) 17, 1229
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 4 cut(s) 265, 399, 1063, 1104
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 2 cut(s) 64, 867
TaqI TCGA 2 cut(s) 69, 1142
TasI AATT 4 cut(s) 134, 181, 547, 561
TatI WGTACW 1 cut(s) 1260
TauI GCSGC 2 cut(s) 619, 794
TfiI GAWTC 4 cut(s) 469, 919, 1018, 1306
Tru1I TTAA 6 cut(s) 240, 537, 708, 861, 1076, 1302
Tru9I TTAA 6 cut(s) 240, 537, 708, 861, 1076, 1302
TscAI CASTG 1 cut(s) 580
TseFI GTSAC 3 cut(s) 203, 581, 893
TseI GCWGC 4 cut(s) 197, 596, 683, 719
Tsp45I GTSAC 3 cut(s) 203, 581, 893
TspDTI ATGAA 4 cut(s) 1167, 1307, 1361, 1442
TspGWI ACGGA 1 cut(s) 462
TspRI CASTG 1 cut(s) 580
Vha464I CTTAAG 1 cut(s) 1301
VpaK11BI GGWCC 4 cut(s) 79, 981, 1034, 1319
XceI RCATGY 1 cut(s) 157
XmnI GAANNNNTTC 1 cut(s) 930
XspI CTAG 2 cut(s) 17, 1229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.