AT1G15330

SNF1-related protein kinase regulatory subunit gamma-like PV42a

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010304
Physical Location & Seq
Forward (+)
5274271 .. 5275602
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G15330.1

Sequence Viewer

Length: 1059 bp
ATGCAAGAAGAGAAGAGCAAAGAAGATCACAGCCGTCTGATCAATGTCACGGCCAAAGATCTAACGGTCAGAAACCGACGGCTCGTCGAGGTACCATACACGGCTACACTTTCCCACGCAATGAACACATTGGTGGCTAACTCCATCTCAGCCCTCCCAGTGGCTGCACCTCCAGGCCACTGGATCGGAGCCGGTGGTTCCATGATCATGGAATCAGACAAACAAACTGGAGTTGTAAGAAAACACTATATCGGGATTCTCACGATGCTTGACATACTTGCTCATATCGCCGGTGAAGATTCCAATCTCTCTGATCTTGATCGCAAGATGAGTTCACAGGTGTCATCCATCATCGGTCATTGCCTCGAAGGACTCAGTCTCTGGACACTGAATCCTAATACCAGCGTGTTAGAGTGCATGGAAGTGTTTAGCAAAGGGATCCATCGAGCTTTAGTGCCAGTGGAGAGCAGCATAGAGAGCAATAACACTATTGCAGGAGTTGAGTTGATTGAGTCTGCCTCTGCTTACAAGATGCTTACTCAGATGGATCTCTTGCGTTTCCTTAAAGACCATCACTTTGATGACCTCAAAACTGTTCTCTCACGCTCCATCTCTGATCTCGGAGCTGTTAATGATTCCGTTTACGCCATCACAGAGAGAACCACTGTTTCCAATGCCATCAACGTTATGAAGGGTGCTCTGCTCAACGCTGTCCCCATCGTTCATGCACCTGATATAGCACAAGAGGATCATCTGCAGCTAGTCAATGGGAGACATAGAAAAGTGATAGGTACGTTTTCAGCAACTGATTTGAAAGGATGTCGCCTACCGGAGTTGCAAACGTGGCTGCCACTCACAGCTCTGGAGTTCACCGAGAAAACTTCGGGGAAGGAGAGGGAGGTGGTGAGTTGCGGTGTGGAGTCGACTATGGAGGAAGCTATAGAGAAAGTGGTGACCAGAGGAGTGCACAGAGTATGGGTGATGGATCAACAGGGTCTGCTTCAAGGAGTCGTCTCCCTCACTGATATCATACGCTCCCTAAGATCTACTCTTTCGTAA

Protein Analysis

352

Amino Acids

38.6

Weight (kDa)

5.91

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBS PF00571 299 - 347 2.4e-08 CBS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 91
AccB1I GGYRCC 1 cut(s) 91
AccI GTMKAC 1 cut(s) 923
AciI CCGC 1 cut(s) 912
AclI AACGTT 1 cut(s) 684
AclWI GGATC 6 cut(s) 191, 433, 446, 555, 756, 993
AcoI YGGCCR 1 cut(s) 51
AfaI GTAC 2 cut(s) 93, 793
AfiI CCNNNNNNNGG 1 cut(s) 160
AgsI TTSAA 2 cut(s) 814, 1004
AhdI GACNNNNNGTC 1 cut(s) 83
AjnI CCWGG 1 cut(s) 172
AleI CACNNNNGTG 1 cut(s) 131
AluBI AGCT 5 cut(s) 449, 626, 760, 860, 938
AluI AGCT 5 cut(s) 449, 626, 760, 860, 938
Alw21I GWGCWC 2 cut(s) 700, 969
Alw26I GTCTC 3 cut(s) 383, 766, 1018
Alw44I GTGCAC 1 cut(s) 965
AlwI GGATC 6 cut(s) 191, 433, 446, 555, 756, 993
AlwNI CAGNNNCTG 4 cut(s) 164, 381, 806, 997
AoxI GGCC 2 cut(s) 51, 175
ApaLI GTGCAC 1 cut(s) 965
ApeKI GCWGC 4 cut(s) 164, 468, 757, 847
ArsI GACNNNNNNTTYG 2 cut(s) 560, 592
Asp718I GGTACC 1 cut(s) 91
AsuHPI GGTGA 5 cut(s) 305, 862, 916, 964, 991
BaeGI GKGCMC 1 cut(s) 969
BamHI GGATCC 1 cut(s) 438
BanI GGYRCC 1 cut(s) 91
Bbv12I GWGCWC 2 cut(s) 700, 969
BbvI GCAGC 4 cut(s) 151, 480, 769, 834
BceAI ACGGC 4 cut(s) 18, 66, 95, 117
BciT130I CCWGG 1 cut(s) 174
BclI TGATCA 2 cut(s) 39, 204
BcoDI GTCTC 3 cut(s) 383, 766, 1018
BfaI CTAG 1 cut(s) 761
BfmI CTRYAG 2 cut(s) 755, 939
BglII AGATCT 2 cut(s) 58, 1043
BisI GCNGC 4 cut(s) 165, 469, 758, 848
BlsI GCNGC 4 cut(s) 166, 470, 759, 849
Bme1390I CCNGG 1 cut(s) 174
BmeRI GACNNNNNGTC 1 cut(s) 83
BmiI GGNNCC 4 cut(s) 93, 190, 199, 440
BmrFI CCNGG 1 cut(s) 174
BmrI ACTGGG 1 cut(s) 152
BmsI GCATC 2 cut(s) 255, 522
BmuI ACTGGG 1 cut(s) 152
BplI GAGNNNNNCTC 2 cut(s) 503, 535
BpmI CTGGAG 3 cut(s) 156, 249, 884
BsaBI GATNNNNATC 2 cut(s) 303, 318
BsaWI WCCGGW 1 cut(s) 829
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse118I RCCGGY 2 cut(s) 191, 290
Bse1I ACTGG 4 cut(s) 158, 185, 232, 458
Bse3DI GCAATG 2 cut(s) 126, 358
Bse8I GATNNNNATC 2 cut(s) 303, 318
BseBI CCWGG 1 cut(s) 174
BseGI GGATG 2 cut(s) 344, 824
BseJI GATNNNNATC 2 cut(s) 303, 318
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMI GCAATG 2 cut(s) 126, 358
BseMII CTCAG 3 cut(s) 162, 388, 554
BseNI ACTGG 4 cut(s) 158, 185, 232, 458
BseRI GAGGAG 1 cut(s) 975
BseSI GKGCMC 1 cut(s) 969
BseXI GCAGC 4 cut(s) 151, 480, 769, 834
BsgI GTGCAG 1 cut(s) 150
BshFI GGCC 2 cut(s) 53, 177
BshNI GGYRCC 1 cut(s) 91
BsiHKAI GWGCWC 2 cut(s) 700, 969
BsiSI CCGG 3 cut(s) 192, 291, 830
BslFI GGGAC 1 cut(s) 698
BslI CCNNNNNNNGG 1 cut(s) 160
BsmAI GTCTC 3 cut(s) 383, 766, 1018
BsmBI CGTCTC 1 cut(s) 1018
BsmFI GGGAC 1 cut(s) 698
BsnI GGCC 2 cut(s) 53, 177
Bsp1286I GDGCHC 2 cut(s) 700, 969
BspACI CCGC 1 cut(s) 912
BspANI GGCC 2 cut(s) 53, 177
BspCNI CTCAG 3 cut(s) 161, 387, 553
BspLI GGNNCC 4 cut(s) 93, 190, 199, 440
BspMAI CTGCAG 1 cut(s) 759
BspPI GGATC 6 cut(s) 191, 433, 446, 555, 756, 993
BspQI GCTCTTC 1 cut(s) 8
BspT107I GGYRCC 1 cut(s) 91
BsrDI GCAATG 2 cut(s) 126, 358
BsrFI RCCGGY 2 cut(s) 191, 290
BsrI ACTGG 4 cut(s) 158, 185, 232, 458
BssAI RCCGGY 2 cut(s) 191, 290
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 3 cut(s) 67, 595, 667
Bst6I CTCTTC 2 cut(s) 3, 8
BstDEI CTNAG 4 cut(s) 148, 374, 540, 1040
BstEII GGTNACC 1 cut(s) 952
BstF5I GGATG 2 cut(s) 344, 824
BstMAI GTCTC 3 cut(s) 383, 766, 1018
BstMWI GCNNNNNNNGC 3 cut(s) 287, 477, 844
BstNI CCWGG 1 cut(s) 174
BstPI GGTNACC 1 cut(s) 952
BstSCI CCNGG 1 cut(s) 172
BstSFI CTRYAG 2 cut(s) 755, 939
BstSLI GKGCMC 1 cut(s) 969
BstV1I GCAGC 4 cut(s) 151, 480, 769, 834
BstX2I RGATCY 4 cut(s) 58, 438, 547, 1043
BstXI CCANNNNNNTGG 2 cut(s) 180, 208
BstYI RGATCY 4 cut(s) 58, 438, 547, 1043
BsuRI GGCC 2 cut(s) 53, 177
BtsCI GGATG 2 cut(s) 344, 824
BtsIMutI CAGTG 6 cut(s) 165, 178, 386, 465, 663, 1020
CaiI CAGNNNCTG 4 cut(s) 164, 381, 806, 997
Cfr10I RCCGGY 2 cut(s) 191, 290
Csp6I GTAC 2 cut(s) 92, 792
CviAII CATG 4 cut(s) 202, 208, 418, 725
CviQI GTAC 2 cut(s) 92, 792
DdeI CTNAG 4 cut(s) 148, 374, 540, 1040
DriI GACNNNNNGTC 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 51
Eam1104I CTCTTC 2 cut(s) 3, 8
Eam1105I GACNNNNNGTC 1 cut(s) 83
EarI CTCTTC 2 cut(s) 3, 8
Eco32I GATATC 1 cut(s) 1027
Eco91I GGTNACC 1 cut(s) 952
EcoO65I GGTNACC 1 cut(s) 952
EcoRII CCWGG 1 cut(s) 172
EcoRV GATATC 1 cut(s) 1027
Esp3I CGTCTC 1 cut(s) 1018
FaeI CATG 4 cut(s) 205, 211, 421, 728
FaqI GGGAC 1 cut(s) 698
FatI CATG 4 cut(s) 201, 207, 417, 724
FbaI TGATCA 2 cut(s) 39, 204
FblI GTMKAC 1 cut(s) 923
Fnu4HI GCNGC 4 cut(s) 165, 469, 758, 848
FokI GGATG 2 cut(s) 331, 831
Fsp4HI GCNGC 4 cut(s) 165, 469, 758, 848
FspBI CTAG 1 cut(s) 761
GluI GCNGC 4 cut(s) 165, 469, 758, 848
GsuI CTGGAG 3 cut(s) 156, 249, 884
HaeIII GGCC 2 cut(s) 53, 177
HapII CCGG 3 cut(s) 192, 291, 830
Hin1II CATG 4 cut(s) 205, 211, 421, 728
HincII GTYRAC 1 cut(s) 924
HindII GTYRAC 1 cut(s) 924
HinfI GANTC 9 cut(s) 212, 256, 299, 372, 391, 512, 635, 920, 1008
HpaII CCGG 3 cut(s) 192, 291, 830
HphI GGTGA 5 cut(s) 305, 862, 916, 964, 991
Hpy166II GTNNAC 5 cut(s) 335, 643, 870, 924, 967
Hpy188I TCNGA 8 cut(s) 39, 71, 188, 217, 313, 543, 616, 623
Hpy188III TCNNGA 5 cut(s) 253, 262, 317, 382, 863
Hpy8I GTNNAC 5 cut(s) 335, 643, 870, 924, 967
Hpy99I CGWCG 2 cut(s) 81, 89
HpyAV CCTTC 3 cut(s) 362, 685, 883
HpyCH4III ACNGT 3 cut(s) 67, 595, 667
HpyCH4IV ACGT 3 cut(s) 684, 794, 842
HpyCH4V TGCA 8 cut(s) 4, 167, 417, 494, 728, 757, 838, 967
HpyF10VI GCNNNNNNNGC 3 cut(s) 287, 477, 844
HpyF3I CTNAG 4 cut(s) 148, 374, 540, 1040
HpySE526I ACGT 3 cut(s) 684, 794, 842
Hsp92II CATG 4 cut(s) 205, 211, 421, 728
KpnI GGTACC 1 cut(s) 95
Ksp22I TGATCA 2 cut(s) 39, 204
LguI GCTCTTC 1 cut(s) 8
LmnI GCTCC 4 cut(s) 188, 611, 623, 1040
Lsp1109I GCAGC 4 cut(s) 151, 480, 769, 834
LweI GCATC 2 cut(s) 255, 522
MaeI CTAG 1 cut(s) 761
MaeII ACGT 3 cut(s) 684, 794, 842
MaeIII GTNAC 2 cut(s) 46, 952
MboII GAAGA 4 cut(s) 20, 25, 35, 308
MflI RGATCY 4 cut(s) 58, 438, 547, 1043
MhlI GDGCHC 2 cut(s) 700, 969
MlyI GAGTC 4 cut(s) 366, 521, 929, 1017
MseI TTAA 2 cut(s) 564, 630
MslI CAYNNNNRTG 4 cut(s) 131, 206, 422, 579
MspI CCGG 3 cut(s) 192, 291, 830
MspR9I CCNGG 1 cut(s) 174
MvaI CCWGG 1 cut(s) 174
MwoI GCNNNNNNNGC 3 cut(s) 287, 477, 844
NlaIII CATG 4 cut(s) 205, 211, 421, 728
NlaIV GGNNCC 4 cut(s) 93, 190, 199, 440
NmuCI GTSAC 2 cut(s) 46, 952
OliI CACNNNNGTG 1 cut(s) 131
PciSI GCTCTTC 1 cut(s) 8
PfeI GAWTC 5 cut(s) 212, 256, 299, 391, 635
PflFI GACNNNGTC 1 cut(s) 375
PkrI GCNGC 4 cut(s) 166, 470, 759, 849
PleI GAGTC 4 cut(s) 366, 520, 928, 1016
PpsI GAGTC 4 cut(s) 366, 520, 928, 1016
Psp1406I AACGTT 1 cut(s) 684
Psp6I CCWGG 1 cut(s) 172
PspEI GGTNACC 1 cut(s) 952
PspGI CCWGG 1 cut(s) 172
PspN4I GGNNCC 4 cut(s) 93, 190, 199, 440
PstI CTGCAG 1 cut(s) 759
PstNI CAGNNNCTG 4 cut(s) 164, 381, 806, 997
PsuI RGATCY 4 cut(s) 58, 438, 547, 1043
PsyI GACNNNGTC 1 cut(s) 375
RsaI GTAC 2 cut(s) 93, 793
RsaNI GTAC 2 cut(s) 92, 792
RseI CAYNNNNRTG 4 cut(s) 131, 206, 422, 579
SalI GTCGAC 1 cut(s) 922
SapI GCTCTTC 1 cut(s) 8
SaqAI TTAA 2 cut(s) 564, 630
SatI GCNGC 4 cut(s) 165, 469, 758, 848
SchI GAGTC 4 cut(s) 366, 521, 929, 1017
ScrFI CCNGG 1 cut(s) 174
SduI GDGCHC 2 cut(s) 700, 969
SfaNI GCATC 2 cut(s) 255, 522
SfcI CTRYAG 2 cut(s) 755, 939
SgrAI CRCCGGYG 1 cut(s) 290
SmiMI CAYNNNNRTG 4 cut(s) 131, 206, 422, 579
SsiI CCGC 1 cut(s) 912
SspMI CTAG 1 cut(s) 761
StyD4I CCNGG 1 cut(s) 172
TaaI ACNGT 3 cut(s) 67, 595, 667
TaiI ACGT 3 cut(s) 687, 797, 845
TaqI TCGA 4 cut(s) 87, 366, 445, 923
TaqII GACCGA 1 cut(s) 344
TfiI GAWTC 5 cut(s) 212, 256, 299, 391, 635
Tru1I TTAA 2 cut(s) 564, 630
Tru9I TTAA 2 cut(s) 564, 630
TscAI CASTG 6 cut(s) 165, 185, 393, 465, 670, 1027
TseFI GTSAC 2 cut(s) 46, 952
TseI GCWGC 4 cut(s) 164, 468, 757, 847
Tsp45I GTSAC 2 cut(s) 46, 952
TspDTI ATGAA 3 cut(s) 137, 704, 713
TspGWI ACGGA 1 cut(s) 628
TspRI CASTG 6 cut(s) 165, 185, 393, 465, 670, 1027
Tth111I GACNNNGTC 1 cut(s) 375
VneI GTGCAC 1 cut(s) 965
XmiI GTMKAC 1 cut(s) 923
XspI CTAG 1 cut(s) 761
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.