RchiOBHm_Chr2g0135251

SNF1-related protein kinase regulatory subunit gamma-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
52314245 .. 52317385
3141 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50619

Sequence Viewer

Length: 1158 bp
ATGCAGCAAATGATGGAGCAAAGCAATACTCAGTTCTCTGAGACTACTCAGAGGCTGAGAGACAAGAAGGTTGTGGACATGATGCCAAACAAGAGGAGGCTGGTGGAGGTTCCGTACACGGCGACTCTGGCTCACACCATGAACGCATTGGTGGCCAACCAGGTGCTGGCGGTGCCCGTGGCGGCCCCTCCGGGTCATTGGATTGGAGCAGGCGGCTCGATGATTGTGGAAGCTGACAGGCAAACCGGGGCTGTGCGGAAGCACTATATAGGGATGGCAACCATGCTTGATATCCTGGCTCATATTGCAGGAAATGATGGAGATCAATTGATGGTTGATGAGGGAGGGATTCATGATGGGGGGTTTGATCTAGAGCATAAGATGTCTGTCCCCGTTTCTTCGATTATTGGGCATTGCCTCGAGGGTTTAAGCTTGTGGACTCTAAACCCCAACACAAGCATCATAGACTGTATGGAAGTTTTTAGCAAAGGAATACACCGTGCTTTGGTACCACTAGACAGCCACATGAACAACGTCTCTGGAGTTGAACTTGTGGAGTCTGCTTCCAGCTATCGAATGCTAACACAAATGGATGTCCTAAGGTTCCTGAAGGAACATGCTGAAGCTAGCACTGAACTGAATGGCATTCTGTCACGCACCGTTTCTGAATTGGGGGCTGTGACAGAGAGGGTTTATGCAATTACTGATCGCACCAAGGTTATAGATGCCATCAAGTGCATGCGAATTGCTTTGCTAAACGCTGTTCCGATAGTTAGTTCCTCCCCTGCCAACGAAGATGACCACAAGCAGCTTGTAAATGGAAGGGGCAGGCAGGTATTGGGCACATTTTCTGCAACAGATATAAGGGGATGCCACTTGTCAACACTGAAAACATGGTTACCCATAAGCGCACTGGAGTACACAGAGACAATTTCAGCCAGCCCCTTATTATCAAGCAATCCTAATGCGGTCGAGAGTGCAAGAGAACTTGTGGCGTGTCGAGTTGACTCGACACTGGCTGAAGTAATCGACAAGGTCGTCACTAAACACGTGCACAGAATTTGGGTGGTGGATCAACAAGGTTTGCTCATGGGGCTTATTTCACTCACTGATATAATCCGAGTGTTGAGGCACGCCGTGATGTCTGAAACCTCTTGA

Protein Analysis

385

Amino Acids

42.09

Weight (kDa)

5.91

Isoelectric Point (pI)

38.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBS PF00571 328 - 377 1.3e-08 CBS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1037
AbsI CCTCGAGG 1 cut(s) 419
Acc36I ACCTGC 1 cut(s) 823
Acc65I GGTACC 1 cut(s) 508
AccB1I GGYRCC 2 cut(s) 172, 508
AccB7I CCANNNNNTGG 1 cut(s) 166
AciI CCGC 5 cut(s) 170, 182, 213, 256, 968
AclWI GGATC 1 cut(s) 1080
AcoI YGGCCR 1 cut(s) 153
AcsI RAATTY 1 cut(s) 1059
AcuI CTGAAG 3 cut(s) 629, 642, 1041
AcvI CACGTG 1 cut(s) 1051
AdeI CACNNNGTG 1 cut(s) 1138
AfaI GTAC 3 cut(s) 116, 510, 920
AfiI CCNNNNNNNGG 2 cut(s) 166, 505
AflIII ACRYGT 1 cut(s) 1048
AgsI TTSAA 1 cut(s) 548
AjnI CCWGG 2 cut(s) 159, 294
AluBI AGCT 5 cut(s) 233, 432, 570, 626, 811
AluI AGCT 5 cut(s) 233, 432, 570, 626, 811
Alw21I GWGCWC 1 cut(s) 1056
Alw26I GTCTC 4 cut(s) 35, 54, 541, 920
Alw44I GTGCAC 1 cut(s) 1052
AlwI GGATC 1 cut(s) 1080
AlwNI CAGNNNCTG 2 cut(s) 55, 166
Ama87I CYCGRG 1 cut(s) 419
AoxI GGCC 2 cut(s) 153, 183
ApaLI GTGCAC 1 cut(s) 1052
ApeKI GCWGC 2 cut(s) 4, 808
ApoI RAATTY 1 cut(s) 1059
Asp718I GGTACC 1 cut(s) 508
AspLEI GCGC 1 cut(s) 911
AspS9I GGNCC 1 cut(s) 184
AsuC2I CCSGG 2 cut(s) 192, 247
AsuNHI GCTAGC 1 cut(s) 626
AvaI CYCGRG 1 cut(s) 419
AxyI CCTNAGG 1 cut(s) 599
BaeGI GKGCMC 3 cut(s) 177, 845, 1056
BalI TGGCCA 1 cut(s) 155
BanI GGYRCC 2 cut(s) 172, 508
BbrPI CACGTG 1 cut(s) 1051
Bbv12I GWGCWC 1 cut(s) 1056
BbvI GCAGC 2 cut(s) 16, 820
BccI CCATC 6 cut(s) 7, 268, 311, 325, 350, 737
BceAI ACGGC 2 cut(s) 135, 1121
BcgI CGANNNNNNTGC 2 cut(s) 198, 232
BciT130I CCWGG 2 cut(s) 161, 296
BcnI CCSGG 2 cut(s) 192, 247
BcoDI GTCTC 4 cut(s) 35, 54, 541, 920
BfaI CTAG 3 cut(s) 371, 515, 627
BfuAI ACCTGC 1 cut(s) 823
BisI GCNGC 4 cut(s) 5, 183, 214, 809
BlsI GCNGC 4 cut(s) 6, 184, 215, 810
Bme1390I CCNGG 4 cut(s) 161, 192, 247, 296
BmeT110I CYCGRG 1 cut(s) 419
BmgT120I GGNCC 1 cut(s) 184
BmiI GGNNCC 5 cut(s) 111, 174, 186, 510, 605
BmrFI CCNGG 4 cut(s) 161, 192, 247, 296
BmsI GCATC 4 cut(s) 72, 468, 715, 860
BmtI GCTAGC 1 cut(s) 630
BpmI CTGGAG 2 cut(s) 561, 935
BpuMI CCSGG 2 cut(s) 192, 247
BsaAI YACGTR 1 cut(s) 1051
BsaBI GATNNNNATC 1 cut(s) 321
BsaJI CCNNGG 3 cut(s) 177, 246, 714
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 505
Bse1I ACTGG 2 cut(s) 918, 1020
Bse21I CCTNAGG 1 cut(s) 599
Bse3DI GCAATG 1 cut(s) 412
Bse8I GATNNNNATC 1 cut(s) 321
BseBI CCWGG 2 cut(s) 161, 296
BseDI CCNNGG 3 cut(s) 177, 246, 714
BseGI GGATG 3 cut(s) 279, 598, 875
BseJI GATNNNNATC 1 cut(s) 321
BseLI CCNNNNNNNGG 2 cut(s) 166, 505
BseMI GCAATG 1 cut(s) 412
BseMII CTCAG 4 cut(s) 30, 44, 47, 62
BseNI ACTGG 2 cut(s) 918, 1020
BseRI GAGGAG 1 cut(s) 109
BseSI GKGCMC 3 cut(s) 177, 845, 1056
BseXI GCAGC 2 cut(s) 16, 820
Bsh1285I CGRYCG 1 cut(s) 972
BshFI GGCC 2 cut(s) 155, 185
BshNI GGYRCC 2 cut(s) 172, 508
BsiEI CGRYCG 1 cut(s) 972
BsiHKAI GWGCWC 1 cut(s) 1056
BsiHKCI CYCGRG 1 cut(s) 419
BsiSI CCGG 2 cut(s) 191, 246
BslFI GGGAC 1 cut(s) 374
BslI CCNNNNNNNGG 2 cut(s) 166, 505
BsmAI GTCTC 4 cut(s) 35, 54, 541, 920
BsmBI CGTCTC 1 cut(s) 541
BsmFI GGGAC 1 cut(s) 374
BsmI GAATGC 2 cut(s) 582, 645
BsnI GGCC 2 cut(s) 155, 185
BsoBI CYCGRG 1 cut(s) 419
Bsp1286I GDGCHC 3 cut(s) 177, 845, 1056
Bsp143I GATC 4 cut(s) 322, 367, 706, 1072
BspACI CCGC 5 cut(s) 170, 182, 213, 256, 968
BspANI GGCC 2 cut(s) 155, 185
BspCNI CTCAG 4 cut(s) 31, 43, 48, 61
BspHI TCATGA 1 cut(s) 352
BspLI GGNNCC 5 cut(s) 111, 174, 186, 510, 605
BspMI ACCTGC 1 cut(s) 823
BspOI GCTAGC 1 cut(s) 630
BspPI GGATC 1 cut(s) 1080
BspT107I GGYRCC 2 cut(s) 172, 508
BsrDI GCAATG 1 cut(s) 412
BsrI ACTGG 2 cut(s) 918, 1020
BssECI CCNNGG 3 cut(s) 177, 246, 714
BssMI GATC 4 cut(s) 322, 367, 706, 1072
BssT1I CCWWGG 1 cut(s) 714
Bst2UI CCWGG 2 cut(s) 161, 296
Bst4CI ACNGT 3 cut(s) 470, 500, 661
BstBAI YACGTR 1 cut(s) 1051
BstC8I GCNNGC 7 cut(s) 168, 211, 628, 740, 830, 940, 1134
BstDEI CTNAG 5 cut(s) 30, 39, 48, 56, 599
BstDSI CCRYGG 1 cut(s) 177
BstEII GGTNACC 1 cut(s) 897
BstF5I GGATG 3 cut(s) 279, 598, 875
BstHHI GCGC 1 cut(s) 911
BstKTI GATC 4 cut(s) 325, 370, 709, 1075
BstMAI GTCTC 4 cut(s) 35, 54, 541, 920
BstMBI GATC 4 cut(s) 322, 367, 706, 1072
BstMCI CGRYCG 1 cut(s) 972
BstMWI GCNNNNNNNGC 5 cut(s) 128, 152, 172, 305, 1093
BstNI CCWGG 2 cut(s) 161, 296
BstNSI RCATGY 2 cut(s) 620, 742
BstPI GGTNACC 1 cut(s) 897
BstSCI CCNGG 4 cut(s) 159, 190, 245, 294
BstSLI GKGCMC 3 cut(s) 177, 845, 1056
BstV1I GCAGC 2 cut(s) 16, 820
Bsu36I CCTNAGG 1 cut(s) 599
BsuRI GGCC 2 cut(s) 155, 185
BtgI CCRYGG 1 cut(s) 177
BtsCI GGATG 3 cut(s) 279, 598, 875
BtsIMutI CAGTG 5 cut(s) 630, 884, 911, 1013, 1107
BveI ACCTGC 1 cut(s) 823
Cac8I GCNNGC 7 cut(s) 168, 211, 628, 740, 830, 940, 1134
CaiI CAGNNNCTG 2 cut(s) 55, 166
CciI TCATGA 1 cut(s) 352
CfoI GCGC 1 cut(s) 911
Cfr13I GGNCC 1 cut(s) 184
CsiI ACCWGGT 1 cut(s) 159
Csp6I GTAC 3 cut(s) 115, 509, 919
CviAII CATG 9 cut(s) 79, 139, 283, 353, 526, 617, 739, 894, 1090
CviQI GTAC 3 cut(s) 115, 509, 919
DdeI CTNAG 5 cut(s) 30, 39, 48, 56, 599
DpnI GATC 4 cut(s) 324, 369, 708, 1074
DpnII GATC 4 cut(s) 322, 367, 706, 1072
DraIII CACNNNGTG 1 cut(s) 1138
DrdI GACNNNNNNGTC 1 cut(s) 1037
DseDI GACNNNNNNGTC 1 cut(s) 1037
EaeI YGGCCR 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 714
Eco32I GATATC 1 cut(s) 292
Eco57I CTGAAG 3 cut(s) 629, 642, 1041
Eco72I CACGTG 1 cut(s) 1051
Eco81I CCTNAGG 1 cut(s) 599
Eco88I CYCGRG 1 cut(s) 419
Eco91I GGTNACC 1 cut(s) 897
EcoO65I GGTNACC 1 cut(s) 897
EcoRII CCWGG 2 cut(s) 159, 294
EcoRV GATATC 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 714
ErhI CCWWGG 1 cut(s) 714
Esp3I CGTCTC 1 cut(s) 541
FaeI CATG 9 cut(s) 82, 142, 286, 356, 529, 620, 742, 897, 1093
FaqI GGGAC 1 cut(s) 374
FatI CATG 9 cut(s) 78, 138, 282, 352, 525, 616, 738, 893, 1089
Fnu4HI GCNGC 4 cut(s) 5, 183, 214, 809
FokI GGATG 3 cut(s) 286, 605, 882
Fsp4HI GCNGC 4 cut(s) 5, 183, 214, 809
FspBI CTAG 3 cut(s) 371, 515, 627
GlaI GCGC 1 cut(s) 910
GluI GCNGC 4 cut(s) 5, 183, 214, 809
GsuI CTGGAG 2 cut(s) 561, 935
HaeIII GGCC 2 cut(s) 155, 185
HapII CCGG 2 cut(s) 191, 246
HhaI GCGC 1 cut(s) 911
Hin1II CATG 9 cut(s) 82, 142, 286, 356, 529, 620, 742, 897, 1093
Hin6I GCGC 1 cut(s) 909
HinP1I GCGC 1 cut(s) 909
HincII GTYRAC 2 cut(s) 882, 1006
HindII GTYRAC 2 cut(s) 882, 1006
HindIII AAGCTT 1 cut(s) 430
HinfI GANTC 5 cut(s) 124, 349, 439, 557, 1007
HpaII CCGG 2 cut(s) 191, 246
Hpy166II GTNNAC 7 cut(s) 76, 117, 438, 882, 921, 1006, 1054
Hpy188I TCNGA 6 cut(s) 40, 51, 667, 768, 1121, 1147
Hpy188III TCNNGA 6 cut(s) 353, 371, 540, 607, 973, 1155
Hpy8I GTNNAC 7 cut(s) 76, 117, 438, 882, 921, 1006, 1054
HpyAV CCTTC 3 cut(s) 61, 604, 816
HpyCH4III ACNGT 3 cut(s) 470, 500, 661
HpyCH4IV ACGT 2 cut(s) 534, 1050
HpyCH4V TGCA 7 cut(s) 4, 308, 698, 738, 854, 980, 1054
HpyF10VI GCNNNNNNNGC 5 cut(s) 128, 152, 172, 305, 1093
HpyF3I CTNAG 5 cut(s) 30, 39, 48, 56, 599
HpySE526I ACGT 2 cut(s) 534, 1050
Hsp92II CATG 9 cut(s) 82, 142, 286, 356, 529, 620, 742, 897, 1093
HspAI GCGC 1 cut(s) 909
KpnI GGTACC 1 cut(s) 512
Kzo9I GATC 4 cut(s) 322, 367, 706, 1072
LmnI GCTCC 2 cut(s) 16, 206
Lsp1109I GCAGC 2 cut(s) 16, 820
LweI GCATC 4 cut(s) 72, 468, 715, 860
MabI ACCWGGT 1 cut(s) 159
MaeI CTAG 3 cut(s) 371, 515, 627
MaeII ACGT 2 cut(s) 534, 1050
MaeIII GTNAC 4 cut(s) 651, 679, 897, 1039
MalI GATC 4 cut(s) 324, 369, 708, 1074
MboI GATC 4 cut(s) 322, 367, 706, 1072
MboII GAAGA 2 cut(s) 390, 806
MfeI CAATTG 1 cut(s) 326
MhlI GDGCHC 3 cut(s) 177, 845, 1056
MlsI TGGCCA 1 cut(s) 155
MluCI AATT 6 cut(s) 326, 668, 699, 744, 930, 1059
MluNI TGGCCA 1 cut(s) 155
MlyI GAGTC 4 cut(s) 118, 433, 566, 1001
Mox20I TGGCCA 1 cut(s) 155
MscI TGGCCA 1 cut(s) 155
MseI TTAA 1 cut(s) 428
Msp20I TGGCCA 1 cut(s) 155
MspI CCGG 2 cut(s) 191, 246
MspR9I CCNGG 4 cut(s) 161, 192, 247, 296
MunI CAATTG 1 cut(s) 326
Mva1269I GAATGC 2 cut(s) 582, 645
MvaI CCWGG 2 cut(s) 161, 296
MwoI GCNNNNNNNGC 5 cut(s) 128, 152, 172, 305, 1093
NciI CCSGG 2 cut(s) 192, 247
NdeII GATC 4 cut(s) 322, 367, 706, 1072
NheI GCTAGC 1 cut(s) 626
NlaIII CATG 9 cut(s) 82, 142, 286, 356, 529, 620, 742, 897, 1093
NlaIV GGNNCC 5 cut(s) 111, 174, 186, 510, 605
NmuCI GTSAC 3 cut(s) 651, 679, 1039
NspI RCATGY 2 cut(s) 620, 742
PaeI GCATGC 1 cut(s) 742
PaeR7I CTCGAG 1 cut(s) 419
PagI TCATGA 1 cut(s) 352
PcsI WCGNNNNNNNCGW 1 cut(s) 1035
PctI GAATGC 2 cut(s) 582, 645
PfeI GAWTC 1 cut(s) 349
PflFI GACNNNGTC 1 cut(s) 1034
PflMI CCANNNNNTGG 1 cut(s) 166
PkrI GCNGC 4 cut(s) 6, 184, 215, 810
PleI GAGTC 4 cut(s) 118, 433, 565, 1001
PmaCI CACGTG 1 cut(s) 1051
PmlI CACGTG 1 cut(s) 1051
PpsI GAGTC 4 cut(s) 118, 433, 565, 1001
Ppu21I YACGTR 1 cut(s) 1051
Psp6I CCWGG 2 cut(s) 159, 294
PspCI CACGTG 1 cut(s) 1051
PspEI GGTNACC 1 cut(s) 897
PspGI CCWGG 2 cut(s) 159, 294
PspN4I GGNNCC 5 cut(s) 111, 174, 186, 510, 605
PspPI GGNCC 1 cut(s) 184
PspXI VCTCGAGB 1 cut(s) 419
PstNI CAGNNNCTG 2 cut(s) 55, 166
PsyI GACNNNGTC 1 cut(s) 1034
RsaI GTAC 3 cut(s) 116, 510, 920
RsaNI GTAC 3 cut(s) 115, 509, 919
SaqAI TTAA 1 cut(s) 428
SatI GCNGC 4 cut(s) 5, 183, 214, 809
Sau3AI GATC 4 cut(s) 322, 367, 706, 1072
Sau96I GGNCC 1 cut(s) 184
SchI GAGTC 4 cut(s) 118, 433, 566, 1001
ScrFI CCNGG 4 cut(s) 161, 192, 247, 296
SduI GDGCHC 3 cut(s) 177, 845, 1056
SexAI ACCWGGT 1 cut(s) 159
SfaNI GCATC 4 cut(s) 72, 468, 715, 860
Sfr274I CTCGAG 1 cut(s) 419
SlaI CTCGAG 1 cut(s) 419
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
SphI GCATGC 1 cut(s) 742
Sse9I AATT 6 cut(s) 326, 668, 699, 744, 930, 1059
SsiI CCGC 5 cut(s) 170, 182, 213, 256, 968
SspMI CTAG 3 cut(s) 371, 515, 627
StyD4I CCNGG 4 cut(s) 159, 190, 245, 294
StyI CCWWGG 1 cut(s) 714
TaaI ACNGT 3 cut(s) 470, 500, 661
TaiI ACGT 2 cut(s) 537, 1053
TaqI TCGA 8 cut(s) 218, 401, 420, 574, 972, 1000, 1010, 1029
TasI AATT 6 cut(s) 326, 668, 699, 744, 930, 1059
TatI WGTACW 1 cut(s) 918
TauI GCSGC 2 cut(s) 185, 216
TfiI GAWTC 1 cut(s) 349
Tru1I TTAA 1 cut(s) 428
Tru9I TTAA 1 cut(s) 428
TscAI CASTG 5 cut(s) 637, 891, 918, 1020, 1114
TseFI GTSAC 3 cut(s) 651, 679, 1039
TseI GCWGC 2 cut(s) 4, 808
Tsp45I GTSAC 3 cut(s) 651, 679, 1039
TspDTI ATGAA 3 cut(s) 155, 341, 542
TspGWI ACGGA 1 cut(s) 102
TspRI CASTG 5 cut(s) 637, 891, 918, 1020, 1114
Tth111I GACNNNGTC 1 cut(s) 1034
Van91I CCANNNNNTGG 1 cut(s) 166
VneI GTGCAC 1 cut(s) 1052
XapI RAATTY 1 cut(s) 1059
XbaI TCTAGA 1 cut(s) 370
XceI RCATGY 2 cut(s) 620, 742
XcmI CCANNNNNNNNNTGG 3 cut(s) 145, 163, 910
XhoI CTCGAG 1 cut(s) 419
XspI CTAG 3 cut(s) 371, 515, 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.