FvH4_6g29660

SNF1-related protein kinase regulatory subunit gamma-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
22894476 .. 22898220
3745 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g29660.t1

Sequence Viewer

Length: 1155 bp
ATGCAGCAAACAATGGAGCAAAACAACAACCAGTTCTCTGGGAGTACTCAGAGGCTGAGAGACAAGAAAGTTGTGGACATGATGGCAAACAAGCGGAGGCTGGTGGAGGTGCCATACACGGCGACTCTGGCCCACACCATGAACGCCTTGGTGGCCAACCAGGTGCTGGCAGTGCCCGTGGCGGCGCCTCCGGGTCAGTGGATCGGAGCAGGCGGCTCGATGATTGTGGAAGCTGACAGGCAAACCGGGGCTGCGCGGAAGCACTATATAGGGATGGCTACCATGCTTGACATTCTGGCTCATATTGCTGGAAATGATGGAGATCAATTGATGGTTGATGAGGGAGGCGTTCATGAAGGGGGGTTTGATCTAGAGCACAAGATGTCTGTGCCTGTTTCTTCGATCATTGGGCATTGCCTCGAGGGTTTGAGCTTGTGGACTCTAAACCCCAACACAAGCATCATAGACTGTATGGAAGTGTTTAGCAAAGGGATACACCGCGCTTTGGTACCGCTTGACAGCCACATGGACAACGTCTCTGGAGTTGAACTTGTGGAGTCTGCTTCCAGCTATCAAATGCTAACACAAATGGATGTCCTAAGGTTCTTGAAGGAACATGCTGAAGCTAGCACTGAACTCAATGGGATTCTGGCACGCACCGTTTCTGAAGTGGGAGCTGTGACAGAGAGGGTTTATGCAATTACTGATCACACCAAGGTTACAGATGCCATCAAGTGCATGCGAATTGCTTTGCTAAACGCAGTTCCAATAGTTTGCTCCTCCACAGCCAATGAAGATGACCACAAGCAGCTTGTAAATGGAAGAGGTAGGAGGCTCTTGGGCACATTTTCTGCGACAGATATAAGGGGATGCCTCTTATCAACGCTGAAAACATGGTTATCAGTAAGCGCACTGGAGTTTACAGAGACCATTGCAGCCAACCCTTTATTATCAAGCAATCCTAATGCCGGCGAGAGTGTAAGAGAACTTGTGGCGTGTGGAGTTGACTCGACACTGGCTGAAGTAGTTGACAAGGTCGTCACAAAACACGTGCACAGAGTTTGGGTGGTGGATCAACAGGGTTTGCTCATGGGGCTTATTTCTCTCACTGATGTGATTCGAGTGATAAGGCATGGGGTGATGTCTGAAGCCTAA

Protein Analysis

385

Amino Acids

41.58

Weight (kDa)

5.68

Isoelectric Point (pI)

31.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBS PF00571 328 - 377 9.9e-08 CBS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1037
AbsI CCTCGAGG 1 cut(s) 419
Acc65I GGTACC 1 cut(s) 508
AccB1I GGYRCC 3 cut(s) 109, 184, 508
AccB7I CCANNNNNTGG 1 cut(s) 166
AccII CGCG 2 cut(s) 256, 501
AciI CCGC 6 cut(s) 94, 182, 213, 256, 499, 512
AclWI GGATC 2 cut(s) 209, 1080
AcoI YGGCCR 1 cut(s) 153
AcuI CTGAAG 3 cut(s) 642, 687, 1041
AcvI CACGTG 1 cut(s) 1051
AcyI GRCGYC 1 cut(s) 185
AfaI GTAC 2 cut(s) 46, 510
AfiI CCNNNNNNNGG 3 cut(s) 166, 505, 968
AflIII ACRYGT 1 cut(s) 1048
AgsI TTSAA 2 cut(s) 548, 610
AjnI CCWGG 1 cut(s) 159
AleI CACNNNNGTG 1 cut(s) 1112
AluBI AGCT 6 cut(s) 233, 432, 570, 626, 677, 811
AluI AGCT 6 cut(s) 233, 432, 570, 626, 677, 811
Alw21I GWGCWC 2 cut(s) 378, 1056
Alw26I GTCTC 3 cut(s) 54, 541, 920
Alw44I GTGCAC 1 cut(s) 1052
AlwI GGATC 2 cut(s) 209, 1080
AlwNI CAGNNNCTG 2 cut(s) 55, 166
Ama87I CYCGRG 1 cut(s) 419
AoxI GGCC 2 cut(s) 129, 153
ApaLI GTGCAC 1 cut(s) 1052
ApeKI GCWGC 4 cut(s) 4, 251, 808, 935
Asp718I GGTACC 1 cut(s) 508
AspLEI GCGC 4 cut(s) 187, 256, 503, 911
AspS9I GGNCC 1 cut(s) 130
AsuC2I CCSGG 2 cut(s) 192, 247
AsuHPI GGTGA 1 cut(s) 1150
AsuNHI GCTAGC 1 cut(s) 626
AvaI CYCGRG 1 cut(s) 419
AxyI CCTNAGG 1 cut(s) 599
BaeGI GKGCMC 3 cut(s) 177, 845, 1056
BalI TGGCCA 1 cut(s) 155
BanI GGYRCC 3 cut(s) 109, 184, 508
BbrPI CACGTG 1 cut(s) 1051
Bbv12I GWGCWC 2 cut(s) 378, 1056
BbvI GCAGC 4 cut(s) 16, 238, 820, 947
BccI CCATC 5 cut(s) 76, 268, 311, 325, 737
BceAI ACGGC 1 cut(s) 135
BcgI CGANNNNNNTGC 2 cut(s) 198, 232
BciT130I CCWGG 1 cut(s) 161
BciVI GTATCC 1 cut(s) 486
BclI TGATCA 1 cut(s) 706
BcnI CCSGG 2 cut(s) 192, 247
BcoDI GTCTC 3 cut(s) 54, 541, 920
BfaI CTAG 2 cut(s) 371, 627
BfoI RGCGCY 1 cut(s) 188
BfuI GTATCC 1 cut(s) 486
BglI GCCNNNNNGGC 1 cut(s) 152
BisI GCNGC 6 cut(s) 5, 183, 214, 252, 809, 936
BlsI GCNGC 6 cut(s) 6, 184, 215, 253, 810, 937
BmcAI AGTACT 1 cut(s) 46
Bme1390I CCNGG 3 cut(s) 161, 192, 247
BmeT110I CYCGRG 1 cut(s) 419
BmgT120I GGNCC 1 cut(s) 130
BmiI GGNNCC 3 cut(s) 111, 186, 510
BmrFI CCNGG 3 cut(s) 161, 192, 247
BmsI GCATC 3 cut(s) 468, 715, 860
BmtI GCTAGC 1 cut(s) 630
BpmI CTGGAG 2 cut(s) 561, 935
BpuMI CCSGG 2 cut(s) 192, 247
BsaAI YACGTR 1 cut(s) 1051
BsaBI GATNNNNATC 1 cut(s) 321
BsaHI GRCGYC 1 cut(s) 185
BsaI GGTCTC 1 cut(s) 920
BsaJI CCNNGG 4 cut(s) 147, 177, 246, 714
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 505, 968
Bse118I RCCGGY 1 cut(s) 968
Bse1I ACTGG 3 cut(s) 31, 918, 1020
Bse21I CCTNAGG 1 cut(s) 599
Bse3DI GCAATG 2 cut(s) 412, 930
Bse8I GATNNNNATC 1 cut(s) 321
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 4 cut(s) 147, 177, 246, 714
BseGI GGATG 3 cut(s) 279, 598, 875
BseJI GATNNNNATC 1 cut(s) 321
BseLI CCNNNNNNNGG 3 cut(s) 166, 505, 968
BseMI GCAATG 2 cut(s) 412, 930
BseMII CTCAG 2 cut(s) 47, 62
BseNI ACTGG 3 cut(s) 31, 918, 1020
BseRI GAGGAG 1 cut(s) 769
BseSI GKGCMC 3 cut(s) 177, 845, 1056
BseXI GCAGC 4 cut(s) 16, 238, 820, 947
Bsh1236I CGCG 2 cut(s) 256, 501
BshFI GGCC 2 cut(s) 131, 155
BshNI GGYRCC 3 cut(s) 109, 184, 508
BsiHKAI GWGCWC 2 cut(s) 378, 1056
BsiHKCI CYCGRG 1 cut(s) 419
BsiSI CCGG 3 cut(s) 191, 246, 969
BslI CCNNNNNNNGG 3 cut(s) 166, 505, 968
BsmAI GTCTC 3 cut(s) 54, 541, 920
BsmBI CGTCTC 1 cut(s) 541
BsnI GGCC 2 cut(s) 131, 155
Bso31I GGTCTC 1 cut(s) 920
BsoBI CYCGRG 1 cut(s) 419
Bsp1286I GDGCHC 4 cut(s) 177, 378, 845, 1056
Bsp143I GATC 6 cut(s) 201, 322, 367, 402, 706, 1072
BspACI CCGC 6 cut(s) 94, 182, 213, 256, 499, 512
BspANI GGCC 2 cut(s) 131, 155
BspCNI CTCAG 2 cut(s) 48, 61
BspFNI CGCG 2 cut(s) 256, 501
BspHI TCATGA 1 cut(s) 352
BspLI GGNNCC 3 cut(s) 111, 186, 510
BspOI GCTAGC 1 cut(s) 630
BspPI GGATC 2 cut(s) 209, 1080
BspT107I GGYRCC 3 cut(s) 109, 184, 508
BspTNI GGTCTC 1 cut(s) 920
BsrDI GCAATG 2 cut(s) 412, 930
BsrFI RCCGGY 1 cut(s) 968
BsrI ACTGG 3 cut(s) 31, 918, 1020
BssAI RCCGGY 1 cut(s) 968
BssECI CCNNGG 4 cut(s) 147, 177, 246, 714
BssMI GATC 6 cut(s) 201, 322, 367, 402, 706, 1072
BssNI GRCGYC 1 cut(s) 185
BssT1I CCWWGG 2 cut(s) 147, 714
Bst2UI CCWGG 1 cut(s) 161
Bst4CI ACNGT 2 cut(s) 470, 661
Bst6I CTCTTC 1 cut(s) 817
BstACI GRCGYC 1 cut(s) 185
BstBAI YACGTR 1 cut(s) 1051
BstC8I GCNNGC 6 cut(s) 168, 211, 628, 655, 740, 970
BstDEI CTNAG 3 cut(s) 48, 56, 599
BstDSI CCRYGG 1 cut(s) 177
BstF5I GGATG 3 cut(s) 279, 598, 875
BstFNI CGCG 2 cut(s) 256, 501
BstH2I RGCGCY 1 cut(s) 188
BstHHI GCGC 4 cut(s) 187, 256, 503, 911
BstKTI GATC 6 cut(s) 204, 325, 370, 405, 709, 1075
BstMAI GTCTC 3 cut(s) 54, 541, 920
BstMBI GATC 6 cut(s) 201, 322, 367, 402, 706, 1072
BstMWI GCNNNNNNNGC 5 cut(s) 128, 152, 172, 305, 1093
BstNI CCWGG 1 cut(s) 161
BstNSI RCATGY 2 cut(s) 620, 742
BstSCI CCNGG 3 cut(s) 159, 190, 245
BstSLI GKGCMC 3 cut(s) 177, 845, 1056
BstUI CGCG 2 cut(s) 256, 501
BstV1I GCAGC 4 cut(s) 16, 238, 820, 947
BstXI CCANNNNNNTGG 1 cut(s) 38
Bsu36I CCTNAGG 1 cut(s) 599
BsuI GTATCC 1 cut(s) 486
BsuRI GGCC 2 cut(s) 131, 155
BtgI CCRYGG 1 cut(s) 177
BtsCI GGATG 3 cut(s) 279, 598, 875
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 6 cut(s) 177, 203, 630, 911, 1013, 1107
Cac8I GCNNGC 6 cut(s) 168, 211, 628, 655, 740, 970
CaiI CAGNNNCTG 2 cut(s) 55, 166
CciI TCATGA 1 cut(s) 352
CfoI GCGC 4 cut(s) 187, 256, 503, 911
Cfr10I RCCGGY 1 cut(s) 968
Cfr13I GGNCC 1 cut(s) 130
CsiI ACCWGGT 1 cut(s) 159
Csp6I GTAC 2 cut(s) 45, 509
CviQI GTAC 2 cut(s) 45, 509
DdeI CTNAG 3 cut(s) 48, 56, 599
DinI GGCGCC 1 cut(s) 186
DpnI GATC 6 cut(s) 203, 324, 369, 404, 708, 1074
DpnII GATC 6 cut(s) 201, 322, 367, 402, 706, 1072
DrdI GACNNNNNNGTC 1 cut(s) 1037
DseDI GACNNNNNNGTC 1 cut(s) 1037
EaeI YGGCCR 1 cut(s) 153
Eam1104I CTCTTC 1 cut(s) 817
EarI CTCTTC 1 cut(s) 817
Eco130I CCWWGG 2 cut(s) 147, 714
Eco31I GGTCTC 1 cut(s) 920
Eco57I CTGAAG 3 cut(s) 642, 687, 1041
Eco72I CACGTG 1 cut(s) 1051
Eco81I CCTNAGG 1 cut(s) 599
Eco88I CYCGRG 1 cut(s) 419
EcoRII CCWGG 1 cut(s) 159
EcoT14I CCWWGG 2 cut(s) 147, 714
EgeI GGCGCC 1 cut(s) 186
EheI GGCGCC 1 cut(s) 186
ErhI CCWWGG 2 cut(s) 147, 714
Esp3I CGTCTC 1 cut(s) 541
FbaI TGATCA 1 cut(s) 706
Fnu4HI GCNGC 6 cut(s) 5, 183, 214, 252, 809, 936
FokI GGATG 3 cut(s) 286, 605, 882
Fsp4HI GCNGC 6 cut(s) 5, 183, 214, 252, 809, 936
FspBI CTAG 2 cut(s) 371, 627
GlaI GCGC 4 cut(s) 186, 255, 502, 910
GluI GCNGC 6 cut(s) 5, 183, 214, 252, 809, 936
GsuI CTGGAG 2 cut(s) 561, 935
HaeII RGCGCY 1 cut(s) 188
HaeIII GGCC 2 cut(s) 131, 155
HapII CCGG 3 cut(s) 191, 246, 969
HhaI GCGC 4 cut(s) 187, 256, 503, 911
Hin1I GRCGYC 1 cut(s) 185
Hin6I GCGC 4 cut(s) 185, 254, 501, 909
HinP1I GCGC 4 cut(s) 185, 254, 501, 909
HincII GTYRAC 2 cut(s) 1006, 1030
HindII GTYRAC 2 cut(s) 1006, 1030
HinfI GANTC 6 cut(s) 124, 439, 557, 646, 1007, 1117
HpaII CCGG 3 cut(s) 191, 246, 969
HphI GGTGA 1 cut(s) 1150
Hpy166II GTNNAC 6 cut(s) 76, 438, 921, 1006, 1030, 1054
Hpy188I TCNGA 4 cut(s) 51, 206, 667, 1147
Hpy188III TCNNGA 4 cut(s) 353, 371, 540, 607
Hpy8I GTNNAC 6 cut(s) 76, 438, 921, 1006, 1030, 1054
HpyAV CCTTC 2 cut(s) 350, 604
HpyCH4III ACNGT 2 cut(s) 470, 661
HpyCH4IV ACGT 2 cut(s) 534, 1050
HpyCH4V TGCA 5 cut(s) 4, 698, 738, 935, 1054
HpyF10VI GCNNNNNNNGC 5 cut(s) 128, 152, 172, 305, 1093
HpyF3I CTNAG 3 cut(s) 48, 56, 599
HpySE526I ACGT 2 cut(s) 534, 1050
Hsp92I GRCGYC 1 cut(s) 185
HspAI GCGC 4 cut(s) 185, 254, 501, 909
KasI GGCGCC 1 cut(s) 184
KpnI GGTACC 1 cut(s) 512
KroI GCCGGC 1 cut(s) 968
KroNI GCCGGC 1 cut(s) 970
Ksp22I TGATCA 1 cut(s) 706
Kzo9I GATC 6 cut(s) 201, 322, 367, 402, 706, 1072
LmnI GCTCC 4 cut(s) 16, 206, 674, 782
Lsp1109I GCAGC 4 cut(s) 16, 238, 820, 947
LweI GCATC 3 cut(s) 468, 715, 860
MabI ACCWGGT 1 cut(s) 159
MaeI CTAG 2 cut(s) 371, 627
MaeII ACGT 2 cut(s) 534, 1050
MaeIII GTNAC 3 cut(s) 679, 718, 1039
MalI GATC 6 cut(s) 203, 324, 369, 404, 708, 1074
MboI GATC 6 cut(s) 201, 322, 367, 402, 706, 1072
MboII GAAGA 3 cut(s) 390, 806, 834
MfeI CAATTG 1 cut(s) 326
MhlI GDGCHC 4 cut(s) 177, 378, 845, 1056
MlsI TGGCCA 1 cut(s) 155
MluCI AATT 3 cut(s) 326, 699, 744
MluNI TGGCCA 1 cut(s) 155
Mly113I GGCGCC 1 cut(s) 185
MlyI GAGTC 4 cut(s) 118, 433, 566, 1001
Mox20I TGGCCA 1 cut(s) 155
MroNI GCCGGC 1 cut(s) 968
MscI TGGCCA 1 cut(s) 155
MslI CAYNNNNRTG 1 cut(s) 1112
Msp20I TGGCCA 1 cut(s) 155
MspI CCGG 3 cut(s) 191, 246, 969
MspR9I CCNGG 3 cut(s) 161, 192, 247
MunI CAATTG 1 cut(s) 326
MvaI CCWGG 1 cut(s) 161
MvnI CGCG 2 cut(s) 256, 501
MwoI GCNNNNNNNGC 5 cut(s) 128, 152, 172, 305, 1093
NaeI GCCGGC 1 cut(s) 970
NarI GGCGCC 1 cut(s) 185
NciI CCSGG 2 cut(s) 192, 247
NdeII GATC 6 cut(s) 201, 322, 367, 402, 706, 1072
NgoMIV GCCGGC 1 cut(s) 968
NheI GCTAGC 1 cut(s) 626
NlaIV GGNNCC 3 cut(s) 111, 186, 510
NmuCI GTSAC 2 cut(s) 679, 1039
NspI RCATGY 2 cut(s) 620, 742
OliI CACNNNNGTG 1 cut(s) 1112
PaeI GCATGC 1 cut(s) 742
PaeR7I CTCGAG 1 cut(s) 419
PagI TCATGA 1 cut(s) 352
PdiI GCCGGC 1 cut(s) 970
PfeI GAWTC 2 cut(s) 646, 1117
PflFI GACNNNGTC 2 cut(s) 533, 1034
PflMI CCANNNNNTGG 1 cut(s) 166
PkrI GCNGC 6 cut(s) 6, 184, 215, 253, 810, 937
PleI GAGTC 4 cut(s) 118, 433, 565, 1001
PluTI GGCGCC 1 cut(s) 188
PmaCI CACGTG 1 cut(s) 1051
PmlI CACGTG 1 cut(s) 1051
PpsI GAGTC 4 cut(s) 118, 433, 565, 1001
Ppu21I YACGTR 1 cut(s) 1051
Psp6I CCWGG 1 cut(s) 159
PspCI CACGTG 1 cut(s) 1051
PspGI CCWGG 1 cut(s) 159
PspN4I GGNNCC 3 cut(s) 111, 186, 510
PspPI GGNCC 1 cut(s) 130
PspXI VCTCGAGB 1 cut(s) 419
PstNI CAGNNNCTG 2 cut(s) 55, 166
PsyI GACNNNGTC 2 cut(s) 533, 1034
RsaI GTAC 2 cut(s) 46, 510
RsaNI GTAC 2 cut(s) 45, 509
RseI CAYNNNNRTG 1 cut(s) 1112
SatI GCNGC 6 cut(s) 5, 183, 214, 252, 809, 936
Sau3AI GATC 6 cut(s) 201, 322, 367, 402, 706, 1072
Sau96I GGNCC 1 cut(s) 130
ScaI AGTACT 1 cut(s) 46
SchI GAGTC 4 cut(s) 118, 433, 566, 1001
ScrFI CCNGG 3 cut(s) 161, 192, 247
SduI GDGCHC 4 cut(s) 177, 378, 845, 1056
SexAI ACCWGGT 1 cut(s) 159
SfaNI GCATC 3 cut(s) 468, 715, 860
SfoI GGCGCC 1 cut(s) 186
Sfr274I CTCGAG 1 cut(s) 419
SlaI CTCGAG 1 cut(s) 419
SmiMI CAYNNNNRTG 1 cut(s) 1112
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
SphI GCATGC 1 cut(s) 742
Sse9I AATT 3 cut(s) 326, 699, 744
SsiI CCGC 6 cut(s) 94, 182, 213, 256, 499, 512
SspDI GGCGCC 1 cut(s) 184
SspMI CTAG 2 cut(s) 371, 627
StyD4I CCNGG 3 cut(s) 159, 190, 245
StyI CCWWGG 2 cut(s) 147, 714
TaaI ACNGT 2 cut(s) 470, 661
TaiI ACGT 2 cut(s) 537, 1053
TaqI TCGA 5 cut(s) 218, 401, 420, 1010, 1120
TasI AATT 3 cut(s) 326, 699, 744
TatI WGTACW 1 cut(s) 44
TauI GCSGC 2 cut(s) 185, 216
TfiI GAWTC 2 cut(s) 646, 1117
TscAI CASTG 6 cut(s) 177, 203, 637, 918, 1020, 1114
TseFI GTSAC 2 cut(s) 679, 1039
TseI GCWGC 4 cut(s) 4, 251, 808, 935
Tsp45I GTSAC 2 cut(s) 679, 1039
TspDTI ATGAA 4 cut(s) 155, 341, 369, 807
TspRI CASTG 6 cut(s) 177, 203, 637, 918, 1020, 1114
Tth111I GACNNNGTC 2 cut(s) 533, 1034
Van91I CCANNNNNTGG 1 cut(s) 166
VneI GTGCAC 1 cut(s) 1052
XbaI TCTAGA 1 cut(s) 370
XceI RCATGY 2 cut(s) 620, 742
XcmI CCANNNNNNNNNTGG 2 cut(s) 145, 163
XhoI CTCGAG 1 cut(s) 419
XspI CTAG 2 cut(s) 371, 627
ZrmI AGTACT 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.