Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004443.1

Orthogroup ID

OG0010304

Physical Location & Seq

Genomic Coordinates Reverse (-)

4482 .. 5689

Gene Structure 1208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004443.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atggaagtgtttagcaaaggaatacaccgtgctttggtaccactagacagccacatggacaacgtctgtggagttgaacttgtggagtctgcttccagctatcgaatgctaacacaaatggatgtcctaagtttcctgagggaacatgctgaagctagcactgaactgaacggcattctgtcacacaccgtttctgaattgggggctgtgacagagagggtttatgcaattactgatcgcaccaaggttatagatgccatcaagtgcatgcgaattgctttgctaaacgctgttccgatagttaggtcctcccctgccaacgaagatgaccacaagcagcttgtaaatggaaggggtaggcaggtattgggcacattttctgcaacagatataaggggatgccacctgtcaacactgaaaacatggttaccaataagcgcactggagtacacagagacgatttcagccagccctttattatcaaccaatcctaatgcgggcgagagtgcaagagaacttgtggcgtgtcgagttgactcgacagtggctgaagtaatcgacaaggtcgtcactaaacacgtgcacagaatttgggtggtggatcaacaaggtttgctcatggggcttatttcactcactgatataatccgagtgttgaggcacgccttgatgtctgaaacctcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006935 GO:0007275 GO:0008150 GO:0009553 GO:0009555 GO:0009605 GO:0009791 GO:0009856 GO:0009908 GO:0010183 GO:0022414 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0044706 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048868 GO:0050896 GO:0050918 GO:0051704 GO:0061458 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04068 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 map04068 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410

Pfam Domains

Protein Families

CBS

Protein Analysis

228

Amino Acids

25.03

Weight (kDa)

5.98

Isoelectric Point (pI)

31.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15330
fragaria_vesca	FvH4_6g29660 FvH4_6g29660 FvH4_6g29660 FvH4_6g29660
malus_domestica	MD17G1212300.v1.1
prunus_persica	Prupe.3G087600_v2.0.a1 Prupe.3G087600_v2.0.a1
pyrus_communis	pycom17g21720
rosa_chinensis	RchiOBHm_Chr2g0135251
rosa_laevigata	RLG00000019457
rosa_multiflora	Rmu_sc0002732.1_g000009 Rmu_sc0004443.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109350
rosa_rugosa	Rorug02G0324200 Rorug02G0324300
rosa_samantha	Rh2AG370800 Rh2BG380800 Rh2CG360000 Rh2DG397300
rosa_wichuraiana	Rw2G030620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	566
Acc36I	ACCTGC	1 cut(s)	352
Acc65I	GGTACC	1 cut(s)	37
AccB1I	GGYRCC	1 cut(s)	37
AciI	CCGC	1 cut(s)	497
AclWI	GGATC	1 cut(s)	609
AcsI	RAATTY	1 cut(s)	588
AcuI	CTGAAG	2 cut(s)	171, 570
AcvI	CACGTG	1 cut(s)	580
AfaI	GTAC	2 cut(s)	39, 449
AfiI	CCNNNNNNNGG	2 cut(s)	34, 497
AflIII	ACRYGT	1 cut(s)	577
AgsI	TTSAA	1 cut(s)	77
AluBI	AGCT	3 cut(s)	99, 155, 340
AluI	AGCT	3 cut(s)	99, 155, 340
Alw21I	GWGCWC	1 cut(s)	585
Alw26I	GTCTC	1 cut(s)	449
Alw44I	GTGCAC	1 cut(s)	581
AlwI	GGATC	1 cut(s)	609
AlwNI	CAGNNNCTG	1 cut(s)	548
ApaLI	GTGCAC	1 cut(s)	581
ApeKI	GCWGC	1 cut(s)	337
ApoI	RAATTY	1 cut(s)	588
Asp718I	GGTACC	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	440
AspS9I	GGNCC	1 cut(s)	306
AsuNHI	GCTAGC	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	306
AxyI	CCTNAGG	1 cut(s)	137
BaeGI	GKGCMC	2 cut(s)	374, 585
BanI	GGYRCC	1 cut(s)	37
BbrPI	CACGTG	1 cut(s)	580
Bbv12I	GWGCWC	1 cut(s)	585
BbvI	GCAGC	1 cut(s)	349
BccI	CCATC	1 cut(s)	266
BceAI	ACGGC	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	449
BfaI	CTAG	2 cut(s)	44, 156
BfuAI	ACCTGC	1 cut(s)	352
BisI	GCNGC	1 cut(s)	338
BlsI	GCNGC	1 cut(s)	339
Bme18I	GGWCC	1 cut(s)	306
BmgT120I	GGNCC	1 cut(s)	306
BmiI	GGNNCC	1 cut(s)	39
BmsI	GCATC	2 cut(s)	244, 389
BmtI	GCTAGC	1 cut(s)	159
BpmI	CTGGAG	1 cut(s)	464
BsaAI	YACGTR	1 cut(s)	580
BsaJI	CCNNGG	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 497
Bse1I	ACTGG	1 cut(s)	447
Bse21I	CCTNAGG	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	2 cut(s)	127, 404
BseLI	CCNNNNNNNGG	2 cut(s)	34, 497
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	447
BseSI	GKGCMC	2 cut(s)	374, 585
BseXI	GCAGC	1 cut(s)	349
BshNI	GGYRCC	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	585
BslI	CCNNNNNNNGG	2 cut(s)	34, 497
BsmAI	GTCTC	1 cut(s)	449
BsmBI	CGTCTC	1 cut(s)	449
BsmI	GAATGC	2 cut(s)	111, 174
Bsp1286I	GDGCHC	2 cut(s)	374, 585
Bsp143I	GATC	2 cut(s)	235, 601
BspACI	CCGC	1 cut(s)	497
BspCNI	CTCAG	1 cut(s)	129
BspLI	GGNNCC	1 cut(s)	39
BspMI	ACCTGC	1 cut(s)	352
BspOI	GCTAGC	1 cut(s)	159
BspPI	GGATC	1 cut(s)	609
BspT107I	GGYRCC	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	447
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	2 cut(s)	235, 601
BssT1I	CCWWGG	1 cut(s)	243
Bst4CI	ACNGT	3 cut(s)	29, 190, 544
BstBAI	YACGTR	1 cut(s)	580
BstC8I	GCNNGC	5 cut(s)	157, 269, 469, 499, 663
BstDEI	CTNAG	2 cut(s)	128, 137
BstEII	GGTNACC	1 cut(s)	426
BstF5I	GGATG	2 cut(s)	127, 404
BstHHI	GCGC	1 cut(s)	440
BstKTI	GATC	2 cut(s)	238, 604
BstMAI	GTCTC	1 cut(s)	449
BstMBI	GATC	2 cut(s)	235, 601
BstMWI	GCNNNNNNNGC	1 cut(s)	622
BstNSI	RCATGY	2 cut(s)	149, 271
BstPI	GGTNACC	1 cut(s)	426
BstSLI	GKGCMC	2 cut(s)	374, 585
BstV1I	GCAGC	1 cut(s)	349
Bsu36I	CCTNAGG	1 cut(s)	137
BtsCI	GGATG	2 cut(s)	127, 404
BtsIMutI	CAGTG	5 cut(s)	159, 413, 440, 549, 636
BveI	ACCTGC	1 cut(s)	352
Cac8I	GCNNGC	5 cut(s)	157, 269, 469, 499, 663
CaiI	CAGNNNCTG	1 cut(s)	548
CfoI	GCGC	1 cut(s)	440
Cfr13I	GGNCC	1 cut(s)	306
Csp6I	GTAC	2 cut(s)	38, 448
CspCI	CAANNNNNGTGG	2 cut(s)	49, 84
CviAII	CATG	5 cut(s)	55, 146, 268, 423, 619
CviJI	RGCY	9 cut(s)	51, 99, 155, 206, 340, 467, 471, 548, 625
CviKI_1	RGCY	9 cut(s)	51, 99, 155, 206, 340, 467, 471, 548, 625
CviQI	GTAC	2 cut(s)	38, 448
DdeI	CTNAG	2 cut(s)	128, 137
DpnI	GATC	2 cut(s)	237, 603
DpnII	GATC	2 cut(s)	235, 601
DrdI	GACNNNNNNGTC	1 cut(s)	566
DseDI	GACNNNNNNGTC	1 cut(s)	566
Eco130I	CCWWGG	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	306
Eco57I	CTGAAG	2 cut(s)	171, 570
Eco72I	CACGTG	1 cut(s)	580
Eco81I	CCTNAGG	1 cut(s)	137
Eco91I	GGTNACC	1 cut(s)	426
EcoO109I	RGGNCCY	1 cut(s)	306
EcoO65I	GGTNACC	1 cut(s)	426
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
Esp3I	CGTCTC	1 cut(s)	449
FaeI	CATG	5 cut(s)	58, 149, 271, 426, 622
FaiI	YATR	9 cut(s)	56, 147, 225, 251, 269, 392, 424, 620, 644
FatI	CATG	5 cut(s)	54, 145, 267, 422, 618
FauI	CCCGC	1 cut(s)	490
Fnu4HI	GCNGC	1 cut(s)	338
FokI	GGATG	2 cut(s)	134, 411
Fsp4HI	GCNGC	1 cut(s)	338
FspBI	CTAG	2 cut(s)	44, 156
GlaI	GCGC	1 cut(s)	439
GluI	GCNGC	1 cut(s)	338
GsuI	CTGGAG	1 cut(s)	464
HhaI	GCGC	1 cut(s)	440
Hin1II	CATG	5 cut(s)	58, 149, 271, 426, 622
Hin6I	GCGC	1 cut(s)	438
HinP1I	GCGC	1 cut(s)	438
HincII	GTYRAC	2 cut(s)	411, 535
HindII	GTYRAC	2 cut(s)	411, 535
HinfI	GANTC	2 cut(s)	86, 536
Hpy166II	GTNNAC	4 cut(s)	411, 450, 535, 583
Hpy188I	TCNGA	4 cut(s)	196, 297, 650, 676
Hpy188III	TCNNGA	2 cut(s)	136, 684
Hpy8I	GTNNAC	4 cut(s)	411, 450, 535, 583
HpyAV	CCTTC	1 cut(s)	345
HpyCH4III	ACNGT	3 cut(s)	29, 190, 544
HpyCH4IV	ACGT	2 cut(s)	63, 579
HpyCH4V	TGCA	5 cut(s)	227, 267, 383, 509, 583
HpyF10VI	GCNNNNNNNGC	1 cut(s)	622
HpyF3I	CTNAG	2 cut(s)	128, 137
HpySE526I	ACGT	2 cut(s)	63, 579
Hsp92II	CATG	5 cut(s)	58, 149, 271, 426, 622
HspAI	GCGC	1 cut(s)	438
KpnI	GGTACC	1 cut(s)	41
Kzo9I	GATC	2 cut(s)	235, 601
LpnPI	CCDG	7 cut(s)	109, 149, 327, 347, 419, 428, 481
Lsp1109I	GCAGC	1 cut(s)	349
LweI	GCATC	2 cut(s)	244, 389
MaeI	CTAG	2 cut(s)	44, 156
MaeII	ACGT	2 cut(s)	63, 579
MaeIII	GTNAC	4 cut(s)	180, 208, 426, 568
MalI	GATC	2 cut(s)	237, 603
MboI	GATC	2 cut(s)	235, 601
MboII	GAAGA	1 cut(s)	335
MhlI	GDGCHC	2 cut(s)	374, 585
MluCI	AATT	4 cut(s)	197, 228, 273, 588
MlyI	GAGTC	2 cut(s)	95, 530
MnlI	CCTC	4 cut(s)	132, 210, 319, 651
Mva1269I	GAATGC	2 cut(s)	111, 174
MwoI	GCNNNNNNNGC	1 cut(s)	622
NdeII	GATC	2 cut(s)	235, 601
NheI	GCTAGC	1 cut(s)	155
NlaIII	CATG	5 cut(s)	58, 149, 271, 426, 622
NlaIV	GGNNCC	1 cut(s)	39
NmuCI	GTSAC	3 cut(s)	180, 208, 568
NspI	RCATGY	2 cut(s)	149, 271
PaeI	GCATGC	1 cut(s)	271
PcsI	WCGNNNNNNNCGW	1 cut(s)	564
PctI	GAATGC	2 cut(s)	111, 174
PflFI	GACNNNGTC	2 cut(s)	62, 563
PkrI	GCNGC	1 cut(s)	339
PleI	GAGTC	2 cut(s)	94, 530
PmaCI	CACGTG	1 cut(s)	580
PmlI	CACGTG	1 cut(s)	580
PpsI	GAGTC	2 cut(s)	94, 530
Ppu21I	YACGTR	1 cut(s)	580
PpuMI	RGGWCCY	1 cut(s)	306
Psp5II	RGGWCCY	1 cut(s)	306
PspCI	CACGTG	1 cut(s)	580
PspEI	GGTNACC	1 cut(s)	426
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	306
PspPPI	RGGWCCY	1 cut(s)	306
PstNI	CAGNNNCTG	1 cut(s)	548
PsyI	GACNNNGTC	2 cut(s)	62, 563
RsaI	GTAC	2 cut(s)	39, 449
RsaNI	GTAC	2 cut(s)	38, 448
SatI	GCNGC	1 cut(s)	338
Sau3AI	GATC	2 cut(s)	235, 601
Sau96I	GGNCC	1 cut(s)	306
SchI	GAGTC	2 cut(s)	95, 530
SduI	GDGCHC	2 cut(s)	374, 585
SfaNI	GCATC	2 cut(s)	244, 389
SinI	GGWCC	1 cut(s)	306
SphI	GCATGC	1 cut(s)	271
Sse9I	AATT	4 cut(s)	197, 228, 273, 588
SsiI	CCGC	1 cut(s)	497
SspMI	CTAG	2 cut(s)	44, 156
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	3 cut(s)	29, 190, 544
TaiI	ACGT	2 cut(s)	66, 582
TaqI	TCGA	4 cut(s)	103, 529, 539, 558
TasI	AATT	4 cut(s)	197, 228, 273, 588
TatI	WGTACW	1 cut(s)	447
TscAI	CASTG	5 cut(s)	166, 420, 447, 549, 643
TseFI	GTSAC	3 cut(s)	180, 208, 568
TseI	GCWGC	1 cut(s)	337
Tsp45I	GTSAC	3 cut(s)	180, 208, 568
TspRI	CASTG	5 cut(s)	166, 420, 447, 549, 643
Tth111I	GACNNNGTC	2 cut(s)	62, 563
VneI	GTGCAC	1 cut(s)	581
VpaK11BI	GGWCC	1 cut(s)	306
XapI	RAATTY	1 cut(s)	588
XceI	RCATGY	2 cut(s)	149, 271
XspI	CTAG	2 cut(s)	44, 156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.