Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010304

Physical Location & Seq

Genomic Coordinates Forward (+)

39691328 .. 39692554

Gene Structure 1227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0324200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGCTTTGTTTTCATTCACTTCCATTGCTAAATGTGCCAATGCCATCTCATTTATTCTCTTTGTTGTGTATGTCTCCAGTTTGTTCAACCATCTCAATCTGGCTTCTGTTGCTGCAAAACACAGCAGCCGCAATGGTGTATATGCTTCTCATCATCATCATGGCCATCACCGTGGCCGCCACCATAGTAACCATTCTGATTCTGCTGCAGCATCAGATGATCATTCCAATGCAAGATTGGACCGAGCTTTTCTTGCCCTCCAAGCATGGAAACGAGTGATTTACTCCGACCCATACAACTTTACCACCAATTGGAAAGGTCCTTCAGTTTGCACTTACAAGGGTGTGTACTGTGCACCTGCTCCTGATGAGCCCAAAACCCAAGTTGTTGCTGGCATTGACCTTAATAAAGCTGACATAGCCGGATTCCTCCCAGACGAATTAGGCCTCTTGTCGGACCTTGCACTTATCCATCTGAACAGCAACCGCTTTTGCGGCATCCTCCCTCAGAGTTTGGCCAACCTCACACTCCTTAATGAGCTTGATCTCAGTAACAACAGATTTGTGGGTCCTTTTCCTACTGTAGTCCTCTCTCTTCCTAGTCTAAAATATCTTGATATTCGCTACAATGAGTTTGAAGGGCCAATACCTCCACAACTCTTCAGCAACATAGTACAACTAGATGCAATATTTGTAAATAACAACCGCTTTACCAGTATAAATATTCCAGCTTCTAATTTATTATCATCAGCCAGTGTGGTGGTGTTTGCTAACAATAAATTGGGCGGATGCCTTTCTCCGAGCATAGCTAACTTTGCAGACACATTGGAGGAGCTTTTGCTAATCAACACAAGCTTGTCGGGGTGTCTTCCACAACAAGTTGGGTTTCTGTACAAATTGAGGGTGTTGGATGTGAGCAATAACAACCTGGTTGGTCCTATACCTTACAGCCTTTCAGGGCTAGCTCATTTGGAGCAACTAAATTTGGCCCACAATATGATGACTGGGATTGTGCCAGCTGGAGTTTGTAGTTTGCCAAATTTGGCAAATTTTACAATCTCTTATAATTATTTCTGCGAGGAAGACGGGATTTGTCAGAATTTGACAACATCCAAAGGAGGCAAGACTGCATTTGATGATCGCCGTAACTGCATGCCTGAGAGGCCATACCAGAGGACCCAGAAGGAATGTACTGCTGCTCTTGAGCACCCTGTTTACTGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006935 GO:0007275 GO:0008150 GO:0009553 GO:0009555 GO:0009605 GO:0009791 GO:0009856 GO:0009908 GO:0010183 GO:0022414 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0044706 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048868 GO:0050896 GO:0050918 GO:0051704 GO:0061458 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04068 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 map04068 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410

Pfam Domains

Protein Families

CBS

Protein Analysis

408

Amino Acids

44.78

Weight (kDa)

6.58

Isoelectric Point (pI)

34.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	181 - 237	8.4e-07	Leucine rich repeat
LRR_8	PF13855	275 - 333	4.5e-07	Leucine rich repeat
LRR_8	PF13855	299 - 357	9.2e-09	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15330
fragaria_vesca	FvH4_6g29660 FvH4_6g29660 FvH4_6g29660 FvH4_6g29660
malus_domestica	MD17G1212300.v1.1
prunus_persica	Prupe.3G087600_v2.0.a1 Prupe.3G087600_v2.0.a1
pyrus_communis	pycom17g21720
rosa_chinensis	RchiOBHm_Chr2g0135251
rosa_laevigata	RLG00000019457
rosa_multiflora	Rmu_sc0002732.1_g000009 Rmu_sc0004443.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109350
rosa_rugosa	Rorug02G0324200 Rorug02G0324300
rosa_samantha	Rh2AG370800 Rh2BG380800 Rh2CG360000 Rh2DG397300
rosa_wichuraiana	Rw2G030620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1065
AarI	CACCTGC	1 cut(s)	367
Acc36I	ACCTGC	1 cut(s)	367
AccB7I	CCANNNNNTGG	1 cut(s)	312
AciI	CCGC	6 cut(s)	130, 178, 487, 495, 706, 786
AcoI	YGGCCR	3 cut(s)	163, 175, 516
AcsI	RAATTY	4 cut(s)	982, 1039, 1048, 1099
AcuI	CTGAAG	2 cut(s)	309, 646
AfaI	GTAC	4 cut(s)	350, 675, 893, 1192
AfiI	CCNNNNNNNGG	2 cut(s)	312, 454
AgsI	TTSAA	2 cut(s)	88, 638
AjnI	CCWGG	1 cut(s)	927
AluBI	AGCT	9 cut(s)	248, 413, 541, 731, 809, 835, 855, 965, 1019
AluI	AGCT	9 cut(s)	248, 413, 541, 731, 809, 835, 855, 965, 1019
Alw21I	GWGCWC	2 cut(s)	358, 1209
Alw26I	GTCTC	1 cut(s)	79
Alw44I	GTGCAC	1 cut(s)	354
AoxI	GGCC	7 cut(s)	163, 175, 445, 516, 641, 987, 1163
ApaLI	GTGCAC	1 cut(s)	354
ApeKI	GCWGC	5 cut(s)	113, 126, 206, 209, 1196
ApoI	RAATTY	4 cut(s)	982, 1039, 1048, 1099
AspS9I	GGNCC	8 cut(s)	241, 320, 457, 569, 641, 935, 988, 1176
AsuHPI	GGTGA	1 cut(s)	161
AsuNHI	GCTAGC	1 cut(s)	961
AvaII	GGWCC	6 cut(s)	241, 320, 457, 569, 935, 1176
BaeGI	GKGCMC	1 cut(s)	358
BalI	TGGCCA	2 cut(s)	165, 518
BanII	GRGCYC	1 cut(s)	375
BarI	GAAGNNNNNNTAC	2 cut(s)	630, 662
BbsI	GAAGAC	2 cut(s)	860, 1089
Bbv12I	GWGCWC	2 cut(s)	358, 1209
BbvI	GCAGC	5 cut(s)	100, 138, 193, 221, 1183
BccI	CCATC	4 cut(s)	53, 99, 174, 480
BceAI	ACGGC	1 cut(s)	1128
BciT130I	CCWGG	1 cut(s)	929
BclI	TGATCA	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	3 cut(s)	600, 680, 962
BfmI	CTRYAG	2 cut(s)	207, 582
BfuAI	ACCTGC	1 cut(s)	367
BglI	GCCNNNNNGGC	1 cut(s)	1162
BisI	GCNGC	8 cut(s)	114, 127, 130, 178, 207, 210, 496, 1197
BlsI	GCNGC	8 cut(s)	115, 128, 131, 179, 208, 211, 497, 1198
Bme1390I	CCNGG	1 cut(s)	929
Bme18I	GGWCC	6 cut(s)	241, 320, 457, 569, 935, 1176
BmgT120I	GGNCC	8 cut(s)	241, 320, 457, 569, 641, 935, 988, 1176
BmiI	GGNNCC	2 cut(s)	570, 1178
BmrFI	CCNGG	1 cut(s)	929
BmrI	ACTGGG	1 cut(s)	1014
BmsI	GCATC	4 cut(s)	221, 507, 673, 779
BmtI	GCTAGC	1 cut(s)	965
BmuI	ACTGGG	1 cut(s)	1014
BpiI	GAAGAC	2 cut(s)	860, 1089
BpmI	CTGGAG	2 cut(s)	61, 1041
BpuEI	CTTGAG	1 cut(s)	1223
BsaJI	CCNNGG	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	2 cut(s)	312, 454
Bse1I	ACTGG	4 cut(s)	78, 714, 753, 1009
Bse3DI	GCAATG	2 cut(s)	24, 139
BseBI	CCWGG	1 cut(s)	929
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	4 cut(s)	498, 794, 916, 1109
BseLI	CCNNNNNNNGG	2 cut(s)	312, 454
BseMI	GCAATG	2 cut(s)	24, 139
BseMII	CTCAG	3 cut(s)	521, 562, 1149
BseNI	ACTGG	4 cut(s)	78, 714, 753, 1009
BseRI	GAGGAG	1 cut(s)	845
BseSI	GKGCMC	1 cut(s)	358
BseXI	GCAGC	5 cut(s)	100, 138, 193, 221, 1183
BshFI	GGCC	7 cut(s)	165, 177, 447, 518, 643, 989, 1165
BsiHKAI	GWGCWC	2 cut(s)	358, 1209
BsiSI	CCGG	1 cut(s)	423
BslI	CCNNNNNNNGG	2 cut(s)	312, 454
BsmAI	GTCTC	1 cut(s)	79
BsnI	GGCC	7 cut(s)	165, 177, 447, 518, 643, 989, 1165
Bsp1286I	GDGCHC	3 cut(s)	358, 375, 1209
Bsp1407I	TGTACA	1 cut(s)	891
Bsp143I	GATC	3 cut(s)	220, 544, 1138
BspACI	CCGC	6 cut(s)	130, 178, 487, 495, 706, 786
BspANI	GGCC	7 cut(s)	165, 177, 447, 518, 643, 989, 1165
BspCNI	CTCAG	3 cut(s)	520, 561, 1150
BspLI	GGNNCC	2 cut(s)	570, 1178
BspMAI	CTGCAG	1 cut(s)	211
BspMI	ACCTGC	1 cut(s)	367
BspOI	GCTAGC	1 cut(s)	965
BsrDI	GCAATG	2 cut(s)	24, 139
BsrGI	TGTACA	1 cut(s)	891
BsrI	ACTGG	4 cut(s)	78, 714, 753, 1009
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	3 cut(s)	220, 544, 1138
Bst2UI	CCWGG	1 cut(s)	929
Bst4CI	ACNGT	3 cut(s)	173, 353, 583
Bst6I	CTCTTC	2 cut(s)	600, 665
BstAUI	TGTACA	1 cut(s)	891
BstC8I	GCNNGC	4 cut(s)	394, 963, 1017, 1154
BstDEI	CTNAG	3 cut(s)	507, 548, 1158
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	4 cut(s)	498, 794, 916, 1109
BstKTI	GATC	3 cut(s)	223, 547, 1141
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	3 cut(s)	220, 544, 1138
BstMWI	GCNNNNNNNGC	9 cut(s)	35, 110, 254, 263, 419, 495, 815, 1149, 1162
BstNI	CCWGG	1 cut(s)	929
BstNSI	RCATGY	1 cut(s)	1156
BstSCI	CCNGG	1 cut(s)	927
BstSFI	CTRYAG	2 cut(s)	207, 582
BstSLI	GKGCMC	1 cut(s)	358
BstV1I	GCAGC	5 cut(s)	100, 138, 193, 221, 1183
BstV2I	GAAGAC	2 cut(s)	860, 1089
BstXI	CCANNNNNNTGG	2 cut(s)	173, 760
BsuRI	GGCC	7 cut(s)	165, 177, 447, 518, 643, 989, 1165
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	4 cut(s)	498, 794, 916, 1109
BtsIMutI	CAGTG	1 cut(s)	760
BveI	ACCTGC	1 cut(s)	367
Cac8I	GCNNGC	4 cut(s)	394, 963, 1017, 1154
Cfr13I	GGNCC	8 cut(s)	241, 320, 457, 569, 641, 935, 988, 1176
CsiI	ACCWGGT	1 cut(s)	927
Csp6I	GTAC	4 cut(s)	349, 674, 892, 1191
CviAII	CATG	3 cut(s)	161, 267, 1153
CviQI	GTAC	4 cut(s)	349, 674, 892, 1191
DdeI	CTNAG	3 cut(s)	507, 548, 1158
DpnI	GATC	3 cut(s)	222, 546, 1140
DpnII	GATC	3 cut(s)	220, 544, 1138
EaeI	YGGCCR	3 cut(s)	163, 175, 516
Eam1104I	CTCTTC	2 cut(s)	600, 665
EarI	CTCTTC	2 cut(s)	600, 665
EciI	GGCGGA	1 cut(s)	801
Eco147I	AGGCCT	1 cut(s)	447
Eco24I	GRGCYC	1 cut(s)	375
Eco47I	GGWCC	6 cut(s)	241, 320, 457, 569, 935, 1176
Eco57I	CTGAAG	2 cut(s)	309, 646
EcoO109I	RGGNCCY	3 cut(s)	320, 569, 1176
EcoRII	CCWGG	1 cut(s)	927
EcoT38I	GRGCYC	1 cut(s)	375
FaeI	CATG	3 cut(s)	164, 270, 1156
FatI	CATG	3 cut(s)	160, 266, 1152
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	8 cut(s)	114, 127, 130, 178, 207, 210, 496, 1197
FokI	GGATG	4 cut(s)	485, 801, 923, 1096
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	8 cut(s)	114, 127, 130, 178, 207, 210, 496, 1197
FspBI	CTAG	3 cut(s)	600, 680, 962
GluI	GCNGC	8 cut(s)	114, 127, 130, 178, 207, 210, 496, 1197
GsuI	CTGGAG	2 cut(s)	61, 1041
HaeIII	GGCC	7 cut(s)	165, 177, 447, 518, 643, 989, 1165
HapII	CCGG	1 cut(s)	423
Hin1II	CATG	3 cut(s)	164, 270, 1156
HindIII	AAGCTT	1 cut(s)	853
HinfI	GANTC	2 cut(s)	200, 426
HpaII	CCGG	1 cut(s)	423
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	3 cut(s)	349, 356, 1216
Hpy188I	TCNGA	8 cut(s)	199, 217, 289, 457, 477, 510, 801, 1098
Hpy188III	TCNNGA	3 cut(s)	365, 614, 1202
Hpy8I	GTNNAC	3 cut(s)	349, 356, 1216
HpyAV	CCTTC	3 cut(s)	333, 632, 1177
HpyCH4III	ACNGT	3 cut(s)	173, 353, 583
HpyF10VI	GCNNNNNNNGC	9 cut(s)	35, 110, 254, 263, 419, 495, 815, 1149, 1162
HpyF3I	CTNAG	3 cut(s)	507, 548, 1158
Hsp92II	CATG	3 cut(s)	164, 270, 1156
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	220, 544, 1138
LmnI	GCTCC	3 cut(s)	367, 832, 973
Lsp1109I	GCAGC	5 cut(s)	100, 138, 193, 221, 1183
LweI	GCATC	4 cut(s)	221, 507, 673, 779
MabI	ACCWGGT	1 cut(s)	927
MaeI	CTAG	3 cut(s)	600, 680, 962
MaeIII	GTNAC	3 cut(s)	188, 551, 1145
MalI	GATC	3 cut(s)	222, 546, 1140
MboI	GATC	3 cut(s)	220, 544, 1138
MboII	GAAGA	4 cut(s)	587, 652, 860, 1094
MfeI	CAATTG	1 cut(s)	310
MhlI	GDGCHC	3 cut(s)	358, 375, 1209
MlsI	TGGCCA	2 cut(s)	165, 518
MluNI	TGGCCA	2 cut(s)	165, 518
MmeI	TCCRAC	3 cut(s)	312, 435, 888
Mox20I	TGGCCA	2 cut(s)	165, 518
MscI	TGGCCA	2 cut(s)	165, 518
MseI	TTAA	3 cut(s)	405, 534, 1225
MslI	CAYNNNNRTG	3 cut(s)	159, 171, 228
Msp20I	TGGCCA	2 cut(s)	165, 518
MspA1I	CMGCKG	1 cut(s)	1019
MspI	CCGG	1 cut(s)	423
MspR9I	CCNGG	1 cut(s)	929
MunI	CAATTG	1 cut(s)	310
MvaI	CCWGG	1 cut(s)	929
MwoI	GCNNNNNNNGC	9 cut(s)	35, 110, 254, 263, 419, 495, 815, 1149, 1162
NdeII	GATC	3 cut(s)	220, 544, 1138
NheI	GCTAGC	1 cut(s)	961
NlaIII	CATG	3 cut(s)	164, 270, 1156
NlaIV	GGNNCC	2 cut(s)	570, 1178
NspI	RCATGY	1 cut(s)	1156
PaeI	GCATGC	1 cut(s)	1156
PaqCI	CACCTGC	1 cut(s)	367
PceI	AGGCCT	1 cut(s)	447
PfeI	GAWTC	2 cut(s)	200, 426
PflMI	CCANNNNNTGG	1 cut(s)	312
PkrI	GCNGC	8 cut(s)	115, 128, 131, 179, 208, 211, 497, 1198
PpuMI	RGGWCCY	3 cut(s)	320, 569, 1176
PsiI	TTATAA	1 cut(s)	1065
Psp5II	RGGWCCY	3 cut(s)	320, 569, 1176
Psp6I	CCWGG	1 cut(s)	927
PspGI	CCWGG	1 cut(s)	927
PspN4I	GGNNCC	2 cut(s)	570, 1178
PspPI	GGNCC	8 cut(s)	241, 320, 457, 569, 641, 935, 988, 1176
PspPPI	RGGWCCY	3 cut(s)	320, 569, 1176
PstI	CTGCAG	1 cut(s)	211
PvuII	CAGCTG	1 cut(s)	1019
RsaI	GTAC	4 cut(s)	350, 675, 893, 1192
RsaNI	GTAC	4 cut(s)	349, 674, 892, 1191
RseI	CAYNNNNRTG	3 cut(s)	159, 171, 228
SaqAI	TTAA	3 cut(s)	405, 534, 1225
SatI	GCNGC	8 cut(s)	114, 127, 130, 178, 207, 210, 496, 1197
Sau3AI	GATC	3 cut(s)	220, 544, 1138
Sau96I	GGNCC	8 cut(s)	241, 320, 457, 569, 641, 935, 988, 1176
ScrFI	CCNGG	1 cut(s)	929
SduI	GDGCHC	3 cut(s)	358, 375, 1209
SexAI	ACCWGGT	1 cut(s)	927
SfaNI	GCATC	4 cut(s)	221, 507, 673, 779
SfcI	CTRYAG	2 cut(s)	207, 582
SinI	GGWCC	6 cut(s)	241, 320, 457, 569, 935, 1176
SmiMI	CAYNNNNRTG	3 cut(s)	159, 171, 228
SmlI	CTYRAG	1 cut(s)	1202
SmoI	CTYRAG	1 cut(s)	1202
SphI	GCATGC	1 cut(s)	1156
SseBI	AGGCCT	1 cut(s)	447
SsiI	CCGC	6 cut(s)	130, 178, 487, 495, 706, 786
SspI	AATATT	2 cut(s)	690, 724
SspMI	CTAG	3 cut(s)	600, 680, 962
StuI	AGGCCT	1 cut(s)	447
StyD4I	CCNGG	1 cut(s)	927
TaaI	ACNGT	3 cut(s)	173, 353, 583
TaqII	GACCGA	1 cut(s)	258
TatI	WGTACW	4 cut(s)	348, 673, 891, 1190
TauI	GCSGC	3 cut(s)	132, 180, 498
TfiI	GAWTC	2 cut(s)	200, 426
Tru1I	TTAA	3 cut(s)	405, 534, 1225
Tru9I	TTAA	3 cut(s)	405, 534, 1225
TscAI	CASTG	1 cut(s)	760
TseI	GCWGC	5 cut(s)	113, 126, 206, 209, 1196
TspRI	CASTG	1 cut(s)	760
Van91I	CCANNNNNTGG	1 cut(s)	312
VneI	GTGCAC	1 cut(s)	354
VpaK11BI	GGWCC	6 cut(s)	241, 320, 457, 569, 935, 1176
XapI	RAATTY	4 cut(s)	982, 1039, 1048, 1099
XceI	RCATGY	1 cut(s)	1156
XcmI	CCANNNNNNNNNTGG	2 cut(s)	235, 389
XspI	CTAG	3 cut(s)	600, 680, 962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.