Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0010304

Physical Location & Seq

Genomic Coordinates Reverse (-)

25933032 .. 25934927

Gene Structure 1896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1212300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGCAGCAAACAAAGGAGCAGTACAACACCGGCACCGCCACCGCCAAGCAACCTTCTCATGAGGCTGATCAGAGTAAAACTCAGCGGCTAAGAGACAAGAAGGTCGGGGACCTGATGGTTAACAAGCGGAGGCTCGTGGAGGTGCCGTACACGGCGACTCTTGCCCATACCATGAACGCTTTGGTGGCGAACAAGGTGCTGGCCGTGCCTGTGGCGGCACCGCCGGGCCAGTGGATTGGAGCCGGTGGTTCTATGATCGTGGAAGCTGACAAGCAGACCGGGACTGTGCGGAAGCACTATATAGGATTGGCGACCATGCTTGATATCTTGGCTCATATTGCAGGGACTGAAGATCAGCTGATGGATGAAGGAGTTAATGATGGGTTTGATCTTGATCAGAAGATGTCAGTTCCGGTGTCTACGATCATAGGGCAATGCCTTGAGGGTTTAAGCTTGTGGACACTAAACCCCAACACAAGCATCGTAGACTGTATGGAAGTGTTTAGCAAGGGAATACACCGTGCTTTGGTACCCGTAGACAGCCACATGGACAACGTCGCTGGAGTTGAACTTGTGGAATCCGCTTCCAGCTACCGGATGCTCACCCAAATGGATGTGTTGAAGTTCCTCAAGGAACATGCCAGCTCCGGATCCGAACTCGATGGCATTCTATCACGGACGGTGTCTGATTTGGGAGTGGTAACTGAACGAGTTTTCGCCATTACTGACCGCACAAAGGTTATAGATGCCATCAAGTGCATGCGGATAGCTTTGCTGAATGCTGTTCCGATTGTCAGATCCTCAGACGCCGACAATGAAGAAGATCACAAGCAGCTTGTAAATGGCTTTGGTAGGGAGGTTATAGGAACATTTTCGGCAACGGATTTGAGGGGTTGCCACTTTGCGACACTGAAAACATGGCTGCCGATGAGTGCCCTGGACTATACGGAGACTGTCTTTGCAAACCCTCTATTGGCATCAATAGCATCGAACACAGCGGGTCCAACGTCGAGGGAACTGGTGGTATGTCAATCCGATACGCCCTTAGGTCAAGTGATTGACAAGGTGGTCACCAAACAAGTGCACCGAGTTTGGGTTGTGGATCAACAAGGCTTGCTCAAGGGCCTCATTTCTCTTACGGACATAATCCGAGTGACGAGGTTTGCAATAGTAGCTGAACCAAACCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006935 GO:0007275 GO:0008150 GO:0009553 GO:0009555 GO:0009605 GO:0009791 GO:0009856 GO:0009908 GO:0010183 GO:0022414 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0044706 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048868 GO:0050896 GO:0050918 GO:0051704 GO:0061458 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04068 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 map04068 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410

Pfam Domains

Protein Families

CBS

Protein Analysis

397

Amino Acids

43.07

Weight (kDa)

5.71

Isoelectric Point (pI)

32.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	337 - 385	3.3e-08	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15330
fragaria_vesca	FvH4_6g29660 FvH4_6g29660 FvH4_6g29660 FvH4_6g29660
malus_domestica	MD17G1212300.v1.1
prunus_persica	Prupe.3G087600_v2.0.a1 Prupe.3G087600_v2.0.a1
pyrus_communis	pycom17g21720
rosa_chinensis	RchiOBHm_Chr2g0135251
rosa_laevigata	RLG00000019457
rosa_multiflora	Rmu_sc0002732.1_g000009 Rmu_sc0004443.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109350
rosa_rugosa	Rorug02G0324200 Rorug02G0324300
rosa_samantha	Rh2AG370800 Rh2BG380800 Rh2CG360000 Rh2DG397300
rosa_wichuraiana	Rw2G030620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	101, 1067
Acc65I	GGTACC	1 cut(s)	529
AccB1I	GGYRCC	4 cut(s)	32, 142, 217, 529
AccI	GTMKAC	3 cut(s)	419, 486, 537
AccIII	TCCGGA	1 cut(s)	647
AclWI	GGATC	4 cut(s)	645, 658, 792, 1110
AcoI	YGGCCR	1 cut(s)	201
AcuI	CTGAAG	1 cut(s)	369
AcyI	GRCGYC	1 cut(s)	807
AfaI	GTAC	3 cut(s)	23, 149, 531
AfiI	CCNNNNNNNGG	5 cut(s)	526, 594, 736, 973, 1093
AgsI	TTSAA	2 cut(s)	569, 622
AjnI	CCWGG	1 cut(s)	936
AluBI	AGCT	8 cut(s)	266, 358, 453, 591, 645, 770, 835, 1175
AluI	AGCT	8 cut(s)	266, 358, 453, 591, 645, 770, 835, 1175
Alw21I	GWGCWC	1 cut(s)	1086
Alw26I	GTCTC	2 cut(s)	87, 944
Alw44I	GTGCAC	1 cut(s)	1082
AlwI	GGATC	4 cut(s)	645, 658, 792, 1110
AlwNI	CAGNNNCTG	1 cut(s)	347
Aor13HI	TCCGGA	1 cut(s)	647
AoxI	GGCC	3 cut(s)	201, 226, 1123
ApaLI	GTGCAC	1 cut(s)	1082
ApeKI	GCWGC	3 cut(s)	4, 832, 922
Asp700I	GAANNNNTTC	1 cut(s)	871
Asp718I	GGTACC	1 cut(s)	529
AspS9I	GGNCC	4 cut(s)	109, 226, 1001, 1123
AsuC2I	CCSGG	2 cut(s)	225, 280
AsuHPI	GGTGA	2 cut(s)	595, 1063
AvaII	GGWCC	2 cut(s)	109, 1001
AxyI	CCTNAGG	1 cut(s)	1045
BaeGI	GKGCMC	2 cut(s)	937, 1086
BamHI	GGATCC	1 cut(s)	650
BanI	GGYRCC	4 cut(s)	32, 142, 217, 529
BauI	CACGAG	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	1086
BbvI	GCAGC	3 cut(s)	16, 844, 909
BccI	CCATC	5 cut(s)	109, 355, 374, 656, 758
BceAI	ACGGC	3 cut(s)	130, 168, 188
BcgI	CGANNNNNNTGC	2 cut(s)	178, 212
BciT130I	CCWGG	1 cut(s)	938
BclI	TGATCA	2 cut(s)	67, 394
BcnI	CCSGG	2 cut(s)	225, 280
BcoDI	GTCTC	2 cut(s)	87, 944
BisI	GCNGC	5 cut(s)	5, 86, 216, 833, 923
BlsI	GCNGC	5 cut(s)	6, 87, 217, 834, 924
Bme1390I	CCNGG	3 cut(s)	225, 280, 938
Bme18I	GGWCC	2 cut(s)	109, 1001
BmgT120I	GGNCC	4 cut(s)	109, 226, 1001, 1123
BmiI	GGNNCC	8 cut(s)	34, 110, 144, 219, 241, 531, 652, 1002
BmrFI	CCNGG	3 cut(s)	225, 280, 938
BmsI	GCATC	5 cut(s)	489, 588, 736, 986, 995
BplI	GAGNNNNNCTC	2 cut(s)	64, 96
BpmI	CTGGAG	1 cut(s)	582
BpuEI	CTTGAG	3 cut(s)	461, 614, 1103
BpuMI	CCSGG	2 cut(s)	225, 280
BsaBI	GATNNNNATC	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	807
BsaJI	CCNNGG	1 cut(s)	936
BsaWI	WCCGGW	3 cut(s)	412, 594, 647
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	5 cut(s)	526, 594, 736, 973, 1093
Bse118I	RCCGGY	2 cut(s)	29, 242
Bse1I	ACTGG	2 cut(s)	229, 1023
Bse21I	CCTNAGG	1 cut(s)	1045
Bse3DI	GCAATG	1 cut(s)	440
Bse8I	GATNNNNATC	1 cut(s)	393
BseAI	TCCGGA	1 cut(s)	647
BseBI	CCWGG	1 cut(s)	938
BseDI	CCNNGG	1 cut(s)	936
BseGI	GGATG	3 cut(s)	370, 603, 619
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	5 cut(s)	526, 594, 736, 973, 1093
BseMI	GCAATG	1 cut(s)	440
BseMII	CTCAG	2 cut(s)	95, 816
BseNI	ACTGG	2 cut(s)	229, 1023
BseSI	GKGCMC	2 cut(s)	937, 1086
BseXI	GCAGC	3 cut(s)	16, 844, 909
BshFI	GGCC	3 cut(s)	203, 228, 1125
BshNI	GGYRCC	4 cut(s)	32, 142, 217, 529
BsiHKAI	GWGCWC	1 cut(s)	1086
BsiSI	CCGG	7 cut(s)	30, 224, 243, 279, 413, 595, 648
BslFI	GGGAC	3 cut(s)	122, 295, 358
BslI	CCNNNNNNNGG	5 cut(s)	526, 594, 736, 973, 1093
BsmAI	GTCTC	2 cut(s)	87, 944
BsmFI	GGGAC	3 cut(s)	122, 295, 358
BsmI	GAATGC	2 cut(s)	666, 784
BsnI	GGCC	3 cut(s)	203, 228, 1125
Bsp1286I	GDGCHC	2 cut(s)	937, 1086
Bsp13I	TCCGGA	1 cut(s)	647
BspANI	GGCC	3 cut(s)	203, 228, 1125
BspCNI	CTCAG	2 cut(s)	94, 815
BspEI	TCCGGA	1 cut(s)	647
BspHI	TCATGA	1 cut(s)	58
BspLI	GGNNCC	8 cut(s)	34, 110, 144, 219, 241, 531, 652, 1002
BspPI	GGATC	4 cut(s)	645, 658, 792, 1110
BspT107I	GGYRCC	4 cut(s)	32, 142, 217, 529
BsrDI	GCAATG	1 cut(s)	440
BsrFI	RCCGGY	2 cut(s)	29, 242
BsrI	ACTGG	2 cut(s)	229, 1023
BssAI	RCCGGY	2 cut(s)	29, 242
BssECI	CCNNGG	1 cut(s)	936
BssNI	GRCGYC	1 cut(s)	807
BssSI	CACGAG	1 cut(s)	134
Bst2BI	CACGAG	1 cut(s)	134
Bst2UI	CCWGG	1 cut(s)	938
Bst4CI	ACNGT	5 cut(s)	286, 491, 521, 682, 955
BstACI	GRCGYC	1 cut(s)	807
BstC8I	GCNNGC	4 cut(s)	201, 643, 761, 1115
BstDEI	CTNAG	4 cut(s)	81, 89, 802, 1045
BstEII	GGTNACC	1 cut(s)	1069
BstF5I	GGATG	3 cut(s)	370, 603, 619
BstMAI	GTCTC	2 cut(s)	87, 944
BstMWI	GCNNNNNNNGC	6 cut(s)	161, 185, 205, 338, 983, 1172
BstNI	CCWGG	1 cut(s)	938
BstNSI	RCATGY	2 cut(s)	641, 763
BstPI	GGTNACC	1 cut(s)	1069
BstSCI	CCNGG	3 cut(s)	223, 278, 936
BstSLI	GKGCMC	2 cut(s)	937, 1086
BstV1I	GCAGC	3 cut(s)	16, 844, 909
BstX2I	RGATCY	2 cut(s)	650, 797
BstXI	CCANNNNNNTGG	1 cut(s)	236
BstYI	RGATCY	2 cut(s)	650, 797
Bsu36I	CCTNAGG	1 cut(s)	1045
BsuRI	GGCC	3 cut(s)	203, 228, 1125
BtsCI	GGATG	3 cut(s)	370, 603, 619
BtsIMutI	CAGTG	2 cut(s)	236, 908
Cac8I	GCNNGC	4 cut(s)	201, 643, 761, 1115
CaiI	CAGNNNCTG	1 cut(s)	347
CciI	TCATGA	1 cut(s)	58
Cfr10I	RCCGGY	2 cut(s)	29, 242
Cfr13I	GGNCC	4 cut(s)	109, 226, 1001, 1123
CseI	GACGC	1 cut(s)	815
Csp6I	GTAC	3 cut(s)	22, 148, 530
CviAII	CATG	7 cut(s)	59, 172, 316, 547, 638, 760, 918
CviQI	GTAC	3 cut(s)	22, 148, 530
DdeI	CTNAG	4 cut(s)	81, 89, 802, 1045
DrdI	GACNNNNNNGTC	2 cut(s)	101, 1067
DseDI	GACNNNNNNGTC	2 cut(s)	101, 1067
EaeI	YGGCCR	1 cut(s)	201
Eco32I	GATATC	1 cut(s)	325
Eco47I	GGWCC	2 cut(s)	109, 1001
Eco57I	CTGAAG	1 cut(s)	369
Eco81I	CCTNAGG	1 cut(s)	1045
Eco91I	GGTNACC	1 cut(s)	1069
EcoO109I	RGGNCCY	2 cut(s)	109, 1123
EcoO65I	GGTNACC	1 cut(s)	1069
EcoRII	CCWGG	1 cut(s)	936
EcoRV	GATATC	1 cut(s)	325
FaeI	CATG	7 cut(s)	62, 175, 319, 550, 641, 763, 921
FaqI	GGGAC	3 cut(s)	122, 295, 358
FatI	CATG	7 cut(s)	58, 171, 315, 546, 637, 759, 917
FauI	CCCGC	1 cut(s)	991
FbaI	TGATCA	2 cut(s)	67, 394
FblI	GTMKAC	3 cut(s)	419, 486, 537
Fnu4HI	GCNGC	5 cut(s)	5, 86, 216, 833, 923
FokI	GGATG	3 cut(s)	377, 610, 626
Fsp4HI	GCNGC	5 cut(s)	5, 86, 216, 833, 923
GluI	GCNGC	5 cut(s)	5, 86, 216, 833, 923
GsuI	CTGGAG	1 cut(s)	582
HaeIII	GGCC	3 cut(s)	203, 228, 1125
HapII	CCGG	7 cut(s)	30, 224, 243, 279, 413, 595, 648
HgaI	GACGC	1 cut(s)	815
Hin1I	GRCGYC	1 cut(s)	807
Hin1II	CATG	7 cut(s)	62, 175, 319, 550, 641, 763, 921
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	451
HinfI	GANTC	2 cut(s)	157, 578
HpaI	GTTAAC	1 cut(s)	121
HpaII	CCGG	7 cut(s)	30, 224, 243, 279, 413, 595, 648
HphI	GGTGA	2 cut(s)	595, 1063
Hpy166II	GTNNAC	7 cut(s)	121, 150, 420, 459, 487, 538, 1084
Hpy188I	TCNGA	9 cut(s)	72, 399, 655, 688, 789, 797, 805, 1036, 1151
Hpy188III	TCNNGA	3 cut(s)	59, 392, 648
Hpy8I	GTNNAC	7 cut(s)	121, 150, 420, 459, 487, 538, 1084
Hpy99I	CGWCG	2 cut(s)	560, 1012
HpyAV	CCTTC	3 cut(s)	63, 94, 362
HpyCH4III	ACNGT	5 cut(s)	286, 491, 521, 682, 955
HpyCH4IV	ACGT	2 cut(s)	555, 1007
HpyCH4V	TGCA	6 cut(s)	4, 341, 759, 962, 1084, 1166
HpyF10VI	GCNNNNNNNGC	6 cut(s)	161, 185, 205, 338, 983, 1172
HpyF3I	CTNAG	4 cut(s)	81, 89, 802, 1045
HpySE526I	ACGT	2 cut(s)	555, 1007
Hsp92I	GRCGYC	1 cut(s)	807
Hsp92II	CATG	7 cut(s)	62, 175, 319, 550, 641, 763, 921
Kpn2I	TCCGGA	1 cut(s)	647
KpnI	GGTACC	1 cut(s)	533
Ksp22I	TGATCA	2 cut(s)	67, 394
KspAI	GTTAAC	1 cut(s)	121
LmnI	GCTCC	3 cut(s)	16, 239, 650
Lsp1109I	GCAGC	3 cut(s)	16, 844, 909
LweI	GCATC	5 cut(s)	489, 588, 736, 986, 995
MaeII	ACGT	2 cut(s)	555, 1007
MaeIII	GTNAC	3 cut(s)	700, 1069, 1153
MboII	GAAGA	4 cut(s)	362, 412, 830, 833
MflI	RGATCY	2 cut(s)	650, 797
MhlI	GDGCHC	2 cut(s)	937, 1086
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	1 cut(s)	1028
MroI	TCCGGA	1 cut(s)	647
MroXI	GAANNNNTTC	1 cut(s)	871
MseI	TTAA	3 cut(s)	120, 375, 449
MslI	CAYNNNNRTG	1 cut(s)	608
MspA1I	CMGCKG	3 cut(s)	85, 358, 998
MspI	CCGG	7 cut(s)	30, 224, 243, 279, 413, 595, 648
MspR9I	CCNGG	3 cut(s)	225, 280, 938
Mva1269I	GAATGC	2 cut(s)	666, 784
MvaI	CCWGG	1 cut(s)	938
MwoI	GCNNNNNNNGC	6 cut(s)	161, 185, 205, 338, 983, 1172
NciI	CCSGG	2 cut(s)	225, 280
NlaIII	CATG	7 cut(s)	62, 175, 319, 550, 641, 763, 921
NlaIV	GGNNCC	8 cut(s)	34, 110, 144, 219, 241, 531, 652, 1002
NmuCI	GTSAC	2 cut(s)	1069, 1153
NspI	RCATGY	2 cut(s)	641, 763
PaeI	GCATGC	1 cut(s)	763
PagI	TCATGA	1 cut(s)	58
PctI	GAATGC	2 cut(s)	666, 784
PdmI	GAANNNNTTC	1 cut(s)	871
PfeI	GAWTC	1 cut(s)	578
PflFI	GACNNNGTC	2 cut(s)	554, 682
PkrI	GCNGC	5 cut(s)	6, 87, 217, 834, 924
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PpuMI	RGGWCCY	1 cut(s)	109
Psp5II	RGGWCCY	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	936
PspEI	GGTNACC	1 cut(s)	1069
PspGI	CCWGG	1 cut(s)	936
PspN4I	GGNNCC	8 cut(s)	34, 110, 144, 219, 241, 531, 652, 1002
PspPI	GGNCC	4 cut(s)	109, 226, 1001, 1123
PspPPI	RGGWCCY	1 cut(s)	109
PstNI	CAGNNNCTG	1 cut(s)	347
PsuI	RGATCY	2 cut(s)	650, 797
PsyI	GACNNNGTC	2 cut(s)	554, 682
PvuII	CAGCTG	1 cut(s)	358
RsaI	GTAC	3 cut(s)	23, 149, 531
RsaNI	GTAC	3 cut(s)	22, 148, 530
RseI	CAYNNNNRTG	1 cut(s)	608
SaqAI	TTAA	3 cut(s)	120, 375, 449
SatI	GCNGC	5 cut(s)	5, 86, 216, 833, 923
Sau96I	GGNCC	4 cut(s)	109, 226, 1001, 1123
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	3 cut(s)	225, 280, 938
SduI	GDGCHC	2 cut(s)	937, 1086
SfaNI	GCATC	5 cut(s)	489, 588, 736, 986, 995
SinI	GGWCC	2 cut(s)	109, 1001
SmiMI	CAYNNNNRTG	1 cut(s)	608
SmlI	CTYRAG	3 cut(s)	440, 629, 1118
SmoI	CTYRAG	3 cut(s)	440, 629, 1118
SphI	GCATGC	1 cut(s)	763
StyD4I	CCNGG	3 cut(s)	223, 278, 936
TaaI	ACNGT	5 cut(s)	286, 491, 521, 682, 955
TaiI	ACGT	2 cut(s)	558, 1010
TaqI	TCGA	3 cut(s)	660, 989, 1010
TatI	WGTACW	1 cut(s)	21
TauI	GCSGC	2 cut(s)	88, 218
TfiI	GAWTC	1 cut(s)	578
Tru1I	TTAA	3 cut(s)	120, 375, 449
Tru9I	TTAA	3 cut(s)	120, 375, 449
TscAI	CASTG	2 cut(s)	236, 915
TseFI	GTSAC	2 cut(s)	1069, 1153
TseI	GCWGC	3 cut(s)	4, 832, 922
Tsp45I	GTSAC	2 cut(s)	1069, 1153
TspDTI	ATGAA	3 cut(s)	188, 381, 831
TspGWI	ACGGA	4 cut(s)	691, 896, 962, 1154
TspRI	CASTG	2 cut(s)	236, 915
Tth111I	GACNNNGTC	2 cut(s)	554, 682
VneI	GTGCAC	1 cut(s)	1082
VpaK11BI	GGWCC	2 cut(s)	109, 1001
XceI	RCATGY	2 cut(s)	641, 763
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178
XmiI	GTMKAC	3 cut(s)	419, 486, 537
XmnI	GAANNNNTTC	1 cut(s)	871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.