Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0010304

Physical Location & Seq

Genomic Coordinates Forward (+)

48661379 .. 48663989

Gene Structure 2611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG360000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGCAGCAAATGATGGAGCAAAGCAATACTCAGTTCTCTGAGACTACTCAGAGGCTGAGAGACAAGAAGGTTGTGGACATGATGGCAAACAAGAGGAGGCTGGTGGAGGTTCCGTACACGGCGACTCTGGCTCACACCATGAACGCATTGGTGGCCAACCAGGTGCTGGCGGTGCCCGTGGCGGCCCCTCCGGGTCATTGGATCGGAGCAGGCGGCTCGATGATTGTGGAAGCTGACAGGCAAACCGGGGCTGTGCGGAAGCACTATATAGGGATGGCAACCATGCTTGATATCCTGGCTCATATTGCAGGAAATGATGGAGATCAATTGATGGTTGATGAGGGAGGCGTTCATGATGGGGGGTTTGATCTAGAGCATAAGATGTCTGTCCCCGTTTCTTCGATTATTGGGCATTGCCTCGAGGGTTTAAGCTTGTGGACTCTAAACCCCAACACAAGCATCATAGACTGTATGGAAGTGTTTAGCAAAGGAATACACCGTGCTTTGGTACCACTAGACAGCCACATGGACAACGTCTCTGGAGTTGAACTTGTGGAGTCTGCTTCCAGCTATCAAATGCTAACACAAATGGATGTCCTAAGGTTCCTGAAGGAACATTCTGAAGCTAGCACTGAACTGAACGGCATTCTGTCACACACCGTTTCTGAATTGGGGGCTGTGACAGAGAGGGTTTATGCAATTACTGATCGCACCAAGGTTATAGATGCCATCAAGTGCATGCGAATTGCTTTGCTAAACGCTGTTCCGATAGTTAGGTCCTCCCCTGCCAACGAAGATGACCACAAGCAGCTTGTAAATGTATGTATCTCGGTCTTTGAGCTCATTTCCTGTTGTACTTTTATGAGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006935 GO:0007275 GO:0008150 GO:0009553 GO:0009555 GO:0009605 GO:0009791 GO:0009856 GO:0009908 GO:0010183 GO:0022414 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0044706 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048868 GO:0050896 GO:0050918 GO:0051704 GO:0061458 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04068 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 map04068 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410

Pfam Domains

Protein Families

CBS

Protein Analysis

290

Amino Acids

31.83

Weight (kDa)

5.5

Isoelectric Point (pI)

42.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15330
fragaria_vesca	FvH4_6g29660 FvH4_6g29660 FvH4_6g29660 FvH4_6g29660
malus_domestica	MD17G1212300.v1.1
prunus_persica	Prupe.3G087600_v2.0.a1 Prupe.3G087600_v2.0.a1
pyrus_communis	pycom17g21720
rosa_chinensis	RchiOBHm_Chr2g0135251
rosa_laevigata	RLG00000019457
rosa_multiflora	Rmu_sc0002732.1_g000009 Rmu_sc0004443.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109350
rosa_rugosa	Rorug02G0324200 Rorug02G0324300
rosa_samantha	Rh2AG370800 Rh2BG380800 Rh2CG360000 Rh2DG397300
rosa_wichuraiana	Rw2G030620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	419
Acc65I	GGTACC	1 cut(s)	508
AccB1I	GGYRCC	2 cut(s)	172, 508
AccB7I	CCANNNNNTGG	1 cut(s)	166
AciI	CCGC	4 cut(s)	170, 182, 213, 256
AclWI	GGATC	1 cut(s)	209
AcoI	YGGCCR	1 cut(s)	153
AcuI	CTGAAG	2 cut(s)	629, 642
AfaI	GTAC	3 cut(s)	116, 510, 856
AfiI	CCNNNNNNNGG	2 cut(s)	166, 505
AgsI	TTSAA	1 cut(s)	548
AjnI	CCWGG	2 cut(s)	159, 294
AluBI	AGCT	6 cut(s)	233, 432, 570, 626, 811, 841
AluI	AGCT	6 cut(s)	233, 432, 570, 626, 811, 841
Alw21I	GWGCWC	1 cut(s)	843
Alw26I	GTCTC	3 cut(s)	35, 54, 541
AlwI	GGATC	1 cut(s)	209
AlwNI	CAGNNNCTG	2 cut(s)	55, 166
Ama87I	CYCGRG	1 cut(s)	419
AoxI	GGCC	2 cut(s)	153, 183
ApeKI	GCWGC	2 cut(s)	4, 808
Asp718I	GGTACC	1 cut(s)	508
AspS9I	GGNCC	2 cut(s)	184, 777
AsuC2I	CCSGG	2 cut(s)	192, 247
AsuNHI	GCTAGC	1 cut(s)	626
AvaI	CYCGRG	1 cut(s)	419
AvaII	GGWCC	1 cut(s)	777
AxyI	CCTNAGG	1 cut(s)	599
BaeGI	GKGCMC	1 cut(s)	177
BalI	TGGCCA	1 cut(s)	155
BanI	GGYRCC	2 cut(s)	172, 508
BanII	GRGCYC	1 cut(s)	843
Bbv12I	GWGCWC	1 cut(s)	843
BbvI	GCAGC	2 cut(s)	16, 820
BccI	CCATC	7 cut(s)	7, 76, 268, 311, 325, 350, 737
BceAI	ACGGC	2 cut(s)	135, 658
BcgI	CGANNNNNNTGC	2 cut(s)	198, 232
BciT130I	CCWGG	2 cut(s)	161, 296
BcnI	CCSGG	2 cut(s)	192, 247
BcoDI	GTCTC	3 cut(s)	35, 54, 541
BfaI	CTAG	3 cut(s)	371, 515, 627
BisI	GCNGC	4 cut(s)	5, 183, 214, 809
BlsI	GCNGC	4 cut(s)	6, 184, 215, 810
Bme1390I	CCNGG	4 cut(s)	161, 192, 247, 296
Bme18I	GGWCC	1 cut(s)	777
BmeT110I	CYCGRG	1 cut(s)	419
BmgT120I	GGNCC	2 cut(s)	184, 777
BmiI	GGNNCC	5 cut(s)	111, 174, 186, 510, 605
BmrFI	CCNGG	4 cut(s)	161, 192, 247, 296
BmsI	GCATC	2 cut(s)	468, 715
BmtI	GCTAGC	1 cut(s)	630
BpmI	CTGGAG	1 cut(s)	561
BpuMI	CCSGG	2 cut(s)	192, 247
BsaBI	GATNNNNATC	1 cut(s)	321
BsaJI	CCNNGG	3 cut(s)	177, 246, 714
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 505
Bse21I	CCTNAGG	1 cut(s)	599
Bse3DI	GCAATG	1 cut(s)	412
Bse8I	GATNNNNATC	1 cut(s)	321
BseBI	CCWGG	2 cut(s)	161, 296
BseDI	CCNNGG	3 cut(s)	177, 246, 714
BseGI	GGATG	2 cut(s)	279, 598
BseJI	GATNNNNATC	1 cut(s)	321
BseLI	CCNNNNNNNGG	2 cut(s)	166, 505
BseMI	GCAATG	1 cut(s)	412
BseMII	CTCAG	4 cut(s)	30, 44, 47, 62
BseRI	GAGGAG	1 cut(s)	109
BseSI	GKGCMC	1 cut(s)	177
BseXI	GCAGC	2 cut(s)	16, 820
BshFI	GGCC	2 cut(s)	155, 185
BshNI	GGYRCC	2 cut(s)	172, 508
BsiHKAI	GWGCWC	1 cut(s)	843
BsiHKCI	CYCGRG	1 cut(s)	419
BsiSI	CCGG	2 cut(s)	191, 246
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	2 cut(s)	166, 505
BsmAI	GTCTC	3 cut(s)	35, 54, 541
BsmBI	CGTCTC	1 cut(s)	541
BsmFI	GGGAC	1 cut(s)	374
BsmI	GAATGC	1 cut(s)	645
BsnI	GGCC	2 cut(s)	155, 185
BsoBI	CYCGRG	1 cut(s)	419
Bsp1286I	GDGCHC	2 cut(s)	177, 843
Bsp143I	GATC	4 cut(s)	201, 322, 367, 706
BspACI	CCGC	4 cut(s)	170, 182, 213, 256
BspANI	GGCC	2 cut(s)	155, 185
BspCNI	CTCAG	4 cut(s)	31, 43, 48, 61
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	5 cut(s)	111, 174, 186, 510, 605
BspOI	GCTAGC	1 cut(s)	630
BspPI	GGATC	1 cut(s)	209
BspT107I	GGYRCC	2 cut(s)	172, 508
BsrDI	GCAATG	1 cut(s)	412
BssECI	CCNNGG	3 cut(s)	177, 246, 714
BssMI	GATC	4 cut(s)	201, 322, 367, 706
BssT1I	CCWWGG	1 cut(s)	714
Bst2UI	CCWGG	2 cut(s)	161, 296
Bst4CI	ACNGT	3 cut(s)	470, 500, 661
BstC8I	GCNNGC	4 cut(s)	168, 211, 628, 740
BstDEI	CTNAG	5 cut(s)	30, 39, 48, 56, 599
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	2 cut(s)	279, 598
BstKTI	GATC	4 cut(s)	204, 325, 370, 709
BstMAI	GTCTC	3 cut(s)	35, 54, 541
BstMBI	GATC	4 cut(s)	201, 322, 367, 706
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 152, 172, 305
BstNI	CCWGG	2 cut(s)	161, 296
BstNSI	RCATGY	1 cut(s)	742
BstSCI	CCNGG	4 cut(s)	159, 190, 245, 294
BstSLI	GKGCMC	1 cut(s)	177
BstV1I	GCAGC	2 cut(s)	16, 820
Bsu36I	CCTNAGG	1 cut(s)	599
BsuRI	GGCC	2 cut(s)	155, 185
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	279, 598
BtsIMutI	CAGTG	1 cut(s)	630
Cac8I	GCNNGC	4 cut(s)	168, 211, 628, 740
CaiI	CAGNNNCTG	2 cut(s)	55, 166
CciI	TCATGA	1 cut(s)	352
Cfr13I	GGNCC	2 cut(s)	184, 777
CsiI	ACCWGGT	1 cut(s)	159
Csp6I	GTAC	3 cut(s)	115, 509, 855
CviAII	CATG	6 cut(s)	79, 139, 283, 353, 526, 739
CviQI	GTAC	3 cut(s)	115, 509, 855
DdeI	CTNAG	5 cut(s)	30, 39, 48, 56, 599
DpnI	GATC	4 cut(s)	203, 324, 369, 708
DpnII	GATC	4 cut(s)	201, 322, 367, 706
EaeI	YGGCCR	1 cut(s)	153
Ecl136II	GAGCTC	1 cut(s)	841
Eco130I	CCWWGG	1 cut(s)	714
Eco24I	GRGCYC	1 cut(s)	843
Eco32I	GATATC	1 cut(s)	292
Eco47I	GGWCC	1 cut(s)	777
Eco53kI	GAGCTC	1 cut(s)	841
Eco57I	CTGAAG	2 cut(s)	629, 642
Eco81I	CCTNAGG	1 cut(s)	599
Eco88I	CYCGRG	1 cut(s)	419
EcoICRI	GAGCTC	1 cut(s)	841
EcoO109I	RGGNCCY	1 cut(s)	777
EcoRII	CCWGG	2 cut(s)	159, 294
EcoRV	GATATC	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	714
EcoT38I	GRGCYC	1 cut(s)	843
ErhI	CCWWGG	1 cut(s)	714
Esp3I	CGTCTC	1 cut(s)	541
FaeI	CATG	6 cut(s)	82, 142, 286, 356, 529, 742
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	6 cut(s)	78, 138, 282, 352, 525, 738
Fnu4HI	GCNGC	4 cut(s)	5, 183, 214, 809
FokI	GGATG	2 cut(s)	286, 605
FriOI	GRGCYC	1 cut(s)	843
Fsp4HI	GCNGC	4 cut(s)	5, 183, 214, 809
FspBI	CTAG	3 cut(s)	371, 515, 627
GluI	GCNGC	4 cut(s)	5, 183, 214, 809
GsuI	CTGGAG	1 cut(s)	561
HaeIII	GGCC	2 cut(s)	155, 185
HapII	CCGG	2 cut(s)	191, 246
Hin1II	CATG	6 cut(s)	82, 142, 286, 356, 529, 742
HindIII	AAGCTT	1 cut(s)	430
HinfI	GANTC	3 cut(s)	124, 439, 557
HpaII	CCGG	2 cut(s)	191, 246
Hpy166II	GTNNAC	3 cut(s)	76, 117, 438
Hpy188I	TCNGA	6 cut(s)	40, 51, 206, 622, 667, 768
Hpy188III	TCNNGA	4 cut(s)	353, 371, 540, 607
Hpy8I	GTNNAC	3 cut(s)	76, 117, 438
HpyAV	CCTTC	2 cut(s)	61, 604
HpyCH4III	ACNGT	3 cut(s)	470, 500, 661
HpyCH4IV	ACGT	1 cut(s)	534
HpyCH4V	TGCA	4 cut(s)	4, 308, 698, 738
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 152, 172, 305
HpyF3I	CTNAG	5 cut(s)	30, 39, 48, 56, 599
HpySE526I	ACGT	1 cut(s)	534
Hsp92II	CATG	6 cut(s)	82, 142, 286, 356, 529, 742
KpnI	GGTACC	1 cut(s)	512
Kzo9I	GATC	4 cut(s)	201, 322, 367, 706
LmnI	GCTCC	2 cut(s)	16, 206
Lsp1109I	GCAGC	2 cut(s)	16, 820
LweI	GCATC	2 cut(s)	468, 715
MabI	ACCWGGT	1 cut(s)	159
MaeI	CTAG	3 cut(s)	371, 515, 627
MaeII	ACGT	1 cut(s)	534
MaeIII	GTNAC	2 cut(s)	651, 679
MalI	GATC	4 cut(s)	203, 324, 369, 708
MboI	GATC	4 cut(s)	201, 322, 367, 706
MboII	GAAGA	2 cut(s)	390, 806
MfeI	CAATTG	1 cut(s)	326
MhlI	GDGCHC	2 cut(s)	177, 843
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	4 cut(s)	326, 668, 699, 744
MluNI	TGGCCA	1 cut(s)	155
MlyI	GAGTC	3 cut(s)	118, 433, 566
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
MseI	TTAA	1 cut(s)	428
Msp20I	TGGCCA	1 cut(s)	155
MspI	CCGG	2 cut(s)	191, 246
MspR9I	CCNGG	4 cut(s)	161, 192, 247, 296
MunI	CAATTG	1 cut(s)	326
Mva1269I	GAATGC	1 cut(s)	645
MvaI	CCWGG	2 cut(s)	161, 296
MwoI	GCNNNNNNNGC	4 cut(s)	128, 152, 172, 305
NciI	CCSGG	2 cut(s)	192, 247
NdeII	GATC	4 cut(s)	201, 322, 367, 706
NheI	GCTAGC	1 cut(s)	626
NlaIII	CATG	6 cut(s)	82, 142, 286, 356, 529, 742
NlaIV	GGNNCC	5 cut(s)	111, 174, 186, 510, 605
NmuCI	GTSAC	2 cut(s)	651, 679
NspI	RCATGY	1 cut(s)	742
PaeI	GCATGC	1 cut(s)	742
PaeR7I	CTCGAG	1 cut(s)	419
PagI	TCATGA	1 cut(s)	352
PctI	GAATGC	1 cut(s)	645
PflFI	GACNNNGTC	1 cut(s)	533
PflMI	CCANNNNNTGG	1 cut(s)	166
PkrI	GCNGC	4 cut(s)	6, 184, 215, 810
PleI	GAGTC	3 cut(s)	118, 433, 565
PpsI	GAGTC	3 cut(s)	118, 433, 565
PpuMI	RGGWCCY	1 cut(s)	777
Psp124BI	GAGCTC	1 cut(s)	843
Psp5II	RGGWCCY	1 cut(s)	777
Psp6I	CCWGG	2 cut(s)	159, 294
PspGI	CCWGG	2 cut(s)	159, 294
PspN4I	GGNNCC	5 cut(s)	111, 174, 186, 510, 605
PspPI	GGNCC	2 cut(s)	184, 777
PspPPI	RGGWCCY	1 cut(s)	777
PspXI	VCTCGAGB	1 cut(s)	419
PstNI	CAGNNNCTG	2 cut(s)	55, 166
PsyI	GACNNNGTC	1 cut(s)	533
RsaI	GTAC	3 cut(s)	116, 510, 856
RsaNI	GTAC	3 cut(s)	115, 509, 855
SacI	GAGCTC	1 cut(s)	843
SaqAI	TTAA	1 cut(s)	428
SatI	GCNGC	4 cut(s)	5, 183, 214, 809
Sau3AI	GATC	4 cut(s)	201, 322, 367, 706
Sau96I	GGNCC	2 cut(s)	184, 777
SchI	GAGTC	3 cut(s)	118, 433, 566
ScrFI	CCNGG	4 cut(s)	161, 192, 247, 296
SduI	GDGCHC	2 cut(s)	177, 843
SexAI	ACCWGGT	1 cut(s)	159
SfaNI	GCATC	2 cut(s)	468, 715
Sfr274I	CTCGAG	1 cut(s)	419
SinI	GGWCC	1 cut(s)	777
SlaI	CTCGAG	1 cut(s)	419
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
SphI	GCATGC	1 cut(s)	742
Sse9I	AATT	4 cut(s)	326, 668, 699, 744
SsiI	CCGC	4 cut(s)	170, 182, 213, 256
SspMI	CTAG	3 cut(s)	371, 515, 627
SstI	GAGCTC	1 cut(s)	843
StyD4I	CCNGG	4 cut(s)	159, 190, 245, 294
StyI	CCWWGG	1 cut(s)	714
TaaI	ACNGT	3 cut(s)	470, 500, 661
TaiI	ACGT	1 cut(s)	537
TaqI	TCGA	3 cut(s)	218, 401, 420
TaqII	GACCGA	1 cut(s)	820
TasI	AATT	4 cut(s)	326, 668, 699, 744
TatI	WGTACW	1 cut(s)	854
TauI	GCSGC	2 cut(s)	185, 216
Tru1I	TTAA	1 cut(s)	428
Tru9I	TTAA	1 cut(s)	428
TscAI	CASTG	1 cut(s)	637
TseFI	GTSAC	2 cut(s)	651, 679
TseI	GCWGC	2 cut(s)	4, 808
Tsp45I	GTSAC	2 cut(s)	651, 679
TspDTI	ATGAA	2 cut(s)	155, 341
TspGWI	ACGGA	1 cut(s)	102
TspRI	CASTG	1 cut(s)	637
Tth111I	GACNNNGTC	1 cut(s)	533
Van91I	CCANNNNNTGG	1 cut(s)	166
VpaK11BI	GGWCC	1 cut(s)	777
XbaI	TCTAGA	1 cut(s)	370
XceI	RCATGY	1 cut(s)	742
XcmI	CCANNNNNNNNNTGG	2 cut(s)	145, 163
XhoI	CTCGAG	1 cut(s)	419
XspI	CTAG	3 cut(s)	371, 515, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.