Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010876

Physical Location & Seq

Genomic Coordinates Reverse (-)

5365512 .. 5366497

Gene Structure 986 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G15580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCGAATGAGAGTAATAATCTTGGACTCGAAATCACCGAACTACGGCTAGGTCTTCCCGGAGATATCGTCGTCTCCGGTGAGTCCATCTCCGGGAAGAAGAGGGCTTCTCCGGAAGTAGAGATTGATTTGAAATGTGAACCGGCGAAAAAGAGTCAAGTTGTGGGTTGGCCACCGGTTTGTTCGTACCGGAGAAAGAACAGTCTCGAACGGACCAAAAGTTCGTACGTGAAAGTGAGTGTAGATGGAGCTGCATTTTTAAGGAAGATTGATTTGGAAATGTACAAATGTTACCAAGATCTTGCTTCCGCTCTGCAAATTCTGTTCGGATGCTATATCAATTTTGATGATACGTTGAAGGAAAGTGAATGTGTACCAATATATGAAGACAAAGATGGAGATTGGATGCTTGCTGGAGATGTTCCTTGGGAAATGTTCCTTGGATCGTGCAAGAGGTTAAGGATTATGAAGAGATCATGTAACAGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009908 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080086 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

163

Amino Acids

18.35

Weight (kDa)

6.37

Isoelectric Point (pI)

54.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	39 - 159	1.6e-39	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15580 AT1G52830 AT3G15540
fragaria_vesca	FvH4_6g30860
malus_domestica	MD17G1198100.v1.1
prunus_persica	Prupe.3G074800_v2.0.a1
pyrus_communis	pycom09g13290 pycom17g20300
rosa_chinensis	RchiOBHm_Chr2g0137311 RchiOBHm_Chr2g0137321
rosa_laevigata	RLG00000019650
rosa_multiflora	Rmu_sc0010947.1_g000009
rosa_roxburghii	Rroxscaffold_2G00107210
rosa_rugosa	Rorug02G0341100 Rorug02G0341100 Rorug02G0341100
rosa_samantha	Rh2AG389300 Rh2BG397200 Rh2DG412100
rosa_wichuraiana	Rw2G031920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	311
AccIII	TCCGGA	1 cut(s)	112
AciI	CCGC	1 cut(s)	309
AclWI	GGATC	1 cut(s)	451
AcoI	YGGCCR	1 cut(s)	170
AcsI	RAATTY	1 cut(s)	318
AfaI	GTAC	4 cut(s)	188, 227, 284, 375
AfiI	CCNNNNNNNGG	2 cut(s)	45, 93
AgeI	ACCGGT	1 cut(s)	175
AgsI	TTSAA	2 cut(s)	133, 358
AjuI	GAANNNNNNNTTGG	4 cut(s)	257, 289, 423, 455
AloI	GAACNNNNNNTCC	2 cut(s)	205, 237
AluBI	AGCT	1 cut(s)	251
AluI	AGCT	1 cut(s)	251
Alw26I	GTCTC	2 cut(s)	79, 209
AlwI	GGATC	1 cut(s)	451
Aor13HI	TCCGGA	1 cut(s)	112
AoxI	GGCC	1 cut(s)	170
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	1 cut(s)	318
ArsI	GACNNNNNNTTYG	2 cut(s)	205, 237
AsiGI	ACCGGT	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	213
AsuC2I	CCSGG	2 cut(s)	60, 94
AsuHPI	GGTGA	2 cut(s)	28, 92
AvaII	GGWCC	1 cut(s)	213
BalI	TGGCCA	1 cut(s)	172
BbsI	GAAGAC	2 cut(s)	47, 393
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	3 cut(s)	95, 239, 389
BceAI	ACGGC	1 cut(s)	62
BcnI	CCSGG	2 cut(s)	60, 94
BcoDI	GTCTC	2 cut(s)	79, 209
BfaI	CTAG	1 cut(s)	50
BglII	AGATCT	1 cut(s)	298
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
Bme1390I	CCNGG	2 cut(s)	60, 94
Bme18I	GGWCC	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	213
BmrFI	CCNGG	2 cut(s)	60, 94
BmsI	GCATC	2 cut(s)	320, 396
BpiI	GAAGAC	2 cut(s)	47, 393
BplI	GAGNNNNNCTC	4 cut(s)	74, 106, 94, 126
BpmI	CTGGAG	1 cut(s)	435
BpuMI	CCSGG	2 cut(s)	60, 94
BsaAI	YACGTR	1 cut(s)	229
BsaJI	CCNNGG	2 cut(s)	425, 439
BsaWI	WCCGGW	4 cut(s)	77, 112, 175, 189
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 93
Bse118I	RCCGGY	2 cut(s)	142, 175
BseAI	TCCGGA	1 cut(s)	112
BseDI	CCNNGG	2 cut(s)	425, 439
BseGI	GGATG	2 cut(s)	335, 411
BseLI	CCNNNNNNNGG	2 cut(s)	45, 93
BseXI	GCAGC	1 cut(s)	238
BshFI	GGCC	1 cut(s)	172
BshTI	ACCGGT	1 cut(s)	175
BsiSI	CCGG	7 cut(s)	60, 78, 93, 113, 143, 176, 190
BsiWI	CGTACG	1 cut(s)	225
BslI	CCNNNNNNNGG	2 cut(s)	45, 93
BsmAI	GTCTC	2 cut(s)	79, 209
BsmBI	CGTCTC	1 cut(s)	79
BsnI	GGCC	1 cut(s)	172
Bsp13I	TCCGGA	1 cut(s)	112
Bsp1407I	TGTACA	1 cut(s)	282
Bsp143I	GATC	3 cut(s)	298, 443, 473
BspACI	CCGC	1 cut(s)	309
BspANI	GGCC	1 cut(s)	172
BspEI	TCCGGA	1 cut(s)	112
BspPI	GGATC	1 cut(s)	451
BsrBI	CCGCTC	1 cut(s)	311
BsrFI	RCCGGY	2 cut(s)	142, 175
BsrGI	TGTACA	1 cut(s)	282
BssAI	RCCGGY	2 cut(s)	142, 175
BssECI	CCNNGG	2 cut(s)	425, 439
BssMI	GATC	3 cut(s)	298, 443, 473
BssT1I	CCWWGG	2 cut(s)	425, 439
Bst4CI	ACNGT	1 cut(s)	203
Bst6I	CTCTTC	2 cut(s)	95, 464
BstAUI	TGTACA	1 cut(s)	282
BstBAI	YACGTR	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	411
BstF5I	GGATG	2 cut(s)	335, 411
BstKTI	GATC	3 cut(s)	301, 446, 476
BstMAI	GTCTC	2 cut(s)	79, 209
BstMBI	GATC	3 cut(s)	298, 443, 473
BstSCI	CCNGG	2 cut(s)	58, 92
BstV1I	GCAGC	1 cut(s)	238
BstV2I	GAAGAC	2 cut(s)	47, 393
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	335, 411
Cac8I	GCNNGC	1 cut(s)	411
Cfr10I	RCCGGY	2 cut(s)	142, 175
Cfr13I	GGNCC	1 cut(s)	213
Csp6I	GTAC	4 cut(s)	187, 226, 283, 374
CspAI	ACCGGT	1 cut(s)	175
CviAII	CATG	1 cut(s)	477
CviJI	RGCY	4 cut(s)	49, 107, 172, 251
CviKI_1	RGCY	4 cut(s)	49, 107, 172, 251
CviQI	GTAC	4 cut(s)	187, 226, 283, 374
DpnI	GATC	3 cut(s)	300, 445, 475
DpnII	GATC	3 cut(s)	298, 443, 473
EaeI	YGGCCR	1 cut(s)	170
Eam1104I	CTCTTC	2 cut(s)	95, 464
EarI	CTCTTC	2 cut(s)	95, 464
Eco130I	CCWWGG	2 cut(s)	425, 439
Eco32I	GATATC	1 cut(s)	67
Eco47I	GGWCC	1 cut(s)	213
EcoRV	GATATC	1 cut(s)	67
EcoT14I	CCWWGG	2 cut(s)	425, 439
ErhI	CCWWGG	2 cut(s)	425, 439
Esp3I	CGTCTC	1 cut(s)	79
FaeI	CATG	1 cut(s)	480
FaiI	YATR	5 cut(s)	336, 382, 384, 467, 478
FatI	CATG	1 cut(s)	476
Fnu4HI	GCNGC	1 cut(s)	252
FokI	GGATG	2 cut(s)	342, 418
Fsp4HI	GCNGC	1 cut(s)	252
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	1 cut(s)	252
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	1 cut(s)	172
HapII	CCGG	7 cut(s)	60, 78, 93, 113, 143, 176, 190
Hin1II	CATG	1 cut(s)	480
HinfI	GANTC	3 cut(s)	27, 83, 154
HpaII	CCGG	7 cut(s)	60, 78, 93, 113, 143, 176, 190
HphI	GGTGA	2 cut(s)	28, 92
Hpy166II	GTNNAC	2 cut(s)	140, 374
Hpy188I	TCNGA	1 cut(s)	329
Hpy188III	TCNNGA	2 cut(s)	113, 206
Hpy8I	GTNNAC	2 cut(s)	140, 374
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	352
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	2 cut(s)	228, 353
HpyCH4V	TGCA	3 cut(s)	254, 316, 450
HpySE526I	ACGT	2 cut(s)	228, 353
Hsp92II	CATG	1 cut(s)	480
Kpn2I	TCCGGA	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	298, 443, 473
LmnI	GCTCC	1 cut(s)	248
LpnPI	CCDG	8 cut(s)	73, 91, 106, 126, 156, 189, 203, 399
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	2 cut(s)	320, 396
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	2 cut(s)	228, 353
MaeIII	GTNAC	2 cut(s)	290, 479
MalI	GATC	3 cut(s)	300, 445, 475
MbiI	CCGCTC	1 cut(s)	311
MboI	GATC	3 cut(s)	298, 443, 473
MboII	GAAGA	6 cut(s)	47, 109, 112, 277, 398, 481
MflI	RGATCY	1 cut(s)	298
MlsI	TGGCCA	1 cut(s)	172
MluCI	AATT	2 cut(s)	318, 340
MluNI	TGGCCA	1 cut(s)	172
MlyI	GAGTC	3 cut(s)	21, 92, 163
MnlI	CCTC	3 cut(s)	96, 447, 479
Mox20I	TGGCCA	1 cut(s)	172
MroI	TCCGGA	1 cut(s)	112
MscI	TGGCCA	1 cut(s)	172
MseI	TTAA	2 cut(s)	260, 458
Msp20I	TGGCCA	1 cut(s)	172
MspI	CCGG	7 cut(s)	60, 78, 93, 113, 143, 176, 190
MspR9I	CCNGG	2 cut(s)	60, 94
NciI	CCSGG	2 cut(s)	60, 94
NdeII	GATC	3 cut(s)	298, 443, 473
NlaIII	CATG	1 cut(s)	480
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
Pfl23II	CGTACG	1 cut(s)	225
PfoI	TCCNGGA	2 cut(s)	58, 92
PinAI	ACCGGT	1 cut(s)	175
PkrI	GCNGC	1 cut(s)	253
PleI	GAGTC	3 cut(s)	21, 91, 162
PpsI	GAGTC	3 cut(s)	21, 91, 162
Ppu21I	YACGTR	1 cut(s)	229
PspLI	CGTACG	1 cut(s)	225
PspPI	GGNCC	1 cut(s)	213
PsuI	RGATCY	1 cut(s)	298
RsaI	GTAC	4 cut(s)	188, 227, 284, 375
RsaNI	GTAC	4 cut(s)	187, 226, 283, 374
SaqAI	TTAA	2 cut(s)	260, 458
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	3 cut(s)	298, 443, 473
Sau96I	GGNCC	1 cut(s)	213
SchI	GAGTC	3 cut(s)	21, 92, 163
ScrFI	CCNGG	2 cut(s)	60, 94
SetI	ASST	5 cut(s)	55, 231, 253, 356, 458
SfaNI	GCATC	2 cut(s)	320, 396
SinI	GGWCC	1 cut(s)	213
Sse9I	AATT	2 cut(s)	318, 340
SsiI	CCGC	1 cut(s)	309
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	2 cut(s)	58, 92
StyI	CCWWGG	2 cut(s)	425, 439
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	2 cut(s)	231, 356
TaqI	TCGA	2 cut(s)	30, 207
TasI	AATT	2 cut(s)	318, 340
TatI	WGTACW	1 cut(s)	282
Tru1I	TTAA	2 cut(s)	260, 458
Tru9I	TTAA	2 cut(s)	260, 458
TseI	GCWGC	1 cut(s)	251
TspDTI	ATGAA	2 cut(s)	399, 482
TspGWI	ACGGA	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	213
XapI	RAATTY	1 cut(s)	318
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.